Wall clock time and date at job start Tue Mar 31 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 N 1.46499 * 109.47341 * 120.00113 * 2 1 3 5 5 C 1.34777 * 119.99665 * 85.27876 * 4 2 1 6 6 O 1.21583 * 120.00270 * 359.72083 * 5 4 2 7 7 N 1.34775 * 119.99585 * 179.72218 * 5 4 2 8 8 C 1.47140 * 125.59000 * 0.02763 * 7 5 4 9 9 C 1.54605 * 107.36202 * 180.92559 * 8 7 5 10 10 C 1.53651 * 102.73390 * 20.75808 * 9 8 7 11 11 C 1.52373 * 116.39159 * 197.09215 * 10 9 8 12 12 N 1.48268 * 85.66145 * 218.52283 * 11 10 9 13 13 C 1.46897 * 111.00130 * 136.55504 * 12 11 10 14 14 C 1.50703 * 109.46890 * 70.28872 * 13 12 11 15 15 H 1.07992 * 120.00137 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99838 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00135 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99793 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47089 * 90.00404 * 18 16 14 20 20 H 1.48505 * 109.47130 * 210.00644 * 18 16 14 21 21 H 1.48496 * 109.47262 * 330.00296 * 18 16 14 22 22 C 1.48274 * 91.06274 * 23.53954 * 12 11 10 23 23 C 1.47728 * 125.58455 * 179.71269 * 7 5 4 24 24 H 1.08999 * 109.47091 * 299.99643 * 1 2 3 25 25 H 1.08996 * 109.47098 * 60.00014 * 1 2 3 26 26 H 1.09001 * 109.46823 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47091 * 240.00357 * 2 1 3 28 28 H 1.09004 * 109.47138 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47453 * 300.00041 * 3 2 1 30 30 H 1.08999 * 109.46935 * 60.00262 * 3 2 1 31 31 H 0.97001 * 119.99790 * 264.99588 * 4 2 1 32 32 H 1.09004 * 109.86412 * 300.37137 * 8 7 5 33 33 H 1.08995 * 109.86576 * 61.34315 * 8 7 5 34 34 H 1.09010 * 110.75340 * 139.06805 * 9 8 7 35 35 H 1.08993 * 110.75974 * 262.44073 * 9 8 7 36 36 H 1.09001 * 113.83862 * 332.70893 * 11 10 9 37 37 H 1.08998 * 113.84169 * 104.33702 * 11 10 9 38 38 H 1.09001 * 109.47059 * 190.29158 * 13 12 11 39 39 H 1.09004 * 109.47204 * 310.29308 * 13 12 11 40 40 H 0.97006 * 120.00175 * 179.97438 * 17 16 14 41 41 H 1.09003 * 113.84131 * 222.28371 * 22 12 11 42 42 H 1.08999 * 113.96055 * 90.65761 * 22 12 11 43 43 H 1.08997 * 110.39949 * 276.32989 * 23 7 5 44 44 H 1.08996 * 110.39769 * 38.74929 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1524 -2.0317 1.1924 6 8 1.8632 -2.6688 0.1980 7 7 2.6070 -2.6665 2.2909 8 6 2.9909 -2.0205 3.5559 9 6 3.4702 -3.1338 4.5157 10 6 3.8241 -4.2797 3.5552 11 6 3.9513 -5.6666 4.1733 12 7 5.0873 -5.8554 3.2394 13 6 6.2230 -6.4973 3.9148 14 6 5.8820 -7.9342 4.2149 15 1 4.9183 -8.3310 3.9319 16 6 6.8009 -8.7426 4.8500 17 7 7.9746 -8.2596 5.1942 18 14 6.3785 -10.5239 5.2214 19 1 6.7882 -11.3785 4.0782 20 1 7.0970 -10.9579 6.4465 21 1 4.9145 -10.6513 5.4350 22 6 5.2867 -4.3894 3.1419 23 6 2.7954 -4.1256 2.4244 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.2491 -0.1823 1.9894 32 1 3.7990 -1.3106 3.3790 33 1 2.1316 -1.5042 3.9838 34 1 4.3497 -2.8111 5.0730 35 1 2.6697 -3.4308 5.1932 36 1 4.2417 -5.6558 5.2239 37 1 3.1016 -6.3187 3.9710 38 1 7.0993 -6.4593 3.2676 39 1 6.4359 -5.9723 4.8460 40 1 8.6210 -8.8282 5.6413 41 1 5.4859 -4.0382 2.1294 42 1 5.9837 -3.9876 3.8774 43 1 1.8554 -4.6069 2.6942 44 1 3.1856 -4.5447 1.4970 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277941819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:42 Heat of formation + Delta-G solvation = 3.862199 kcal Electronic energy + Delta-G solvation = -22450.465215 eV Core-core repulsion = 19210.684145 eV Total energy + Delta-G solvation = -3239.781070 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71907 -39.43393 -36.62532 -35.73355 -32.98447 -31.90146 -30.43131 -29.25622 -27.49058 -26.94536 -25.61452 -24.27036 -23.07287 -21.49691 -20.52250 -20.07892 -18.59814 -17.69485 -16.51897 -16.30407 -16.07592 -15.02994 -14.94348 -14.72469 -14.65244 -14.17469 -13.96258 -13.42890 -13.28046 -12.92590 -12.74394 -12.60110 -12.55189 -12.35938 -12.07764 -11.86975 -11.69163 -11.58457 -11.22619 -11.19214 -10.92303 -10.83394 -10.48068 -10.30808 -10.14072 -10.08348 -9.54162 -9.25139 -9.15735 -8.49618 -8.47934 -7.71800 -6.05139 -4.06785 2.56585 3.22372 3.31601 3.37485 3.41194 3.88209 4.38705 4.49388 4.53671 4.61281 4.75579 4.80489 4.98802 5.01886 5.13728 5.28128 5.29550 5.32392 5.41562 5.49639 5.50767 5.64615 5.72822 5.84236 5.85834 5.91291 6.02152 6.02887 6.05520 6.20435 6.23669 6.33646 6.41511 6.45211 6.60226 6.72208 7.02703 7.21686 7.64989 7.89443 7.95386 8.12962 8.43190 8.60366 9.01027 9.57900 11.06113 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042493 B = 0.003057 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.772676 B = 9155.728707 C = 9298.771270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.154 3.846 3 C -0.160 4.160 4 N -0.743 5.743 5 C 0.721 3.279 6 O -0.589 6.589 7 N -0.635 5.635 8 C 0.104 3.896 9 C -0.119 4.119 10 C -0.107 4.107 11 C 0.040 3.960 12 N -0.476 5.476 13 C 0.161 3.839 14 C -0.509 4.509 15 H 0.062 0.938 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.016 3.984 23 C 0.157 3.843 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.393 0.607 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.031 0.969 39 H -0.002 1.002 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.324 20.117 -3.381 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.049 3.951 3 C -0.218 4.218 4 N -0.400 5.400 5 C 0.423 3.577 6 O -0.467 6.467 7 N -0.373 5.373 8 C -0.020 4.020 9 C -0.158 4.158 10 C -0.108 4.108 11 C -0.089 4.089 12 N -0.199 5.199 13 C 0.035 3.965 14 C -0.548 4.548 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.113 4.113 23 C 0.035 3.965 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.227 0.773 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.016 0.984 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.463 19.225 -4.716 23.391 hybrid contribution 0.333 -0.275 1.551 1.610 sum -12.130 18.950 -3.164 22.721 Atomic orbital electron populations 1.22206 0.95592 1.02715 1.01695 1.20774 0.93845 0.92236 0.88289 1.22080 1.01794 0.95128 1.02754 1.45254 1.72108 1.05370 1.17225 1.15435 0.78231 0.81653 0.82348 1.90925 1.57508 1.65672 1.32638 1.47751 1.68797 1.08560 1.12222 1.22010 0.99003 0.96312 0.84656 1.22474 1.01885 0.94473 0.96937 1.22595 0.96230 0.96171 0.95800 1.23397 0.96928 0.92036 0.96585 1.68647 1.07274 1.06676 1.37302 1.20197 0.89234 0.94729 0.92369 1.21104 1.01300 0.95138 1.37209 0.91961 1.24992 0.94959 0.98829 0.95787 1.69957 1.06337 1.36308 1.41220 0.86495 0.78461 0.84748 0.77707 1.20583 1.21312 1.19822 1.23623 0.93389 0.93277 1.01027 1.21640 0.97352 0.78440 0.99068 0.92740 0.91797 0.91952 0.89414 0.91956 0.90907 0.92207 0.77285 0.91913 0.92071 0.89876 0.90198 0.90959 0.90215 0.95078 0.98436 0.92910 0.90547 0.91780 0.91441 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.49 37.16 0.35 -1.03 16 2 C 0.15 1.39 3.19 -67.93 -0.22 1.18 16 3 C -0.16 -0.96 9.38 37.16 0.35 -0.61 16 4 N -0.74 -7.64 5.04 -58.68 -0.30 -7.93 16 5 C 0.72 10.38 8.46 -86.92 -0.74 9.65 16 6 O -0.59 -10.94 16.28 5.29 0.09 -10.85 16 7 N -0.64 -8.41 3.34 -176.51 -0.59 -9.00 16 8 C 0.10 1.02 6.16 -2.85 -0.02 1.01 16 9 C -0.12 -1.32 6.35 -25.55 -0.16 -1.49 16 10 C -0.11 -1.57 0.99 -154.66 -0.15 -1.72 16 11 C 0.04 0.72 6.83 -3.39 -0.02 0.70 16 12 N -0.48 -10.23 6.25 -248.20 -1.55 -11.78 16 13 C 0.16 4.18 4.58 -4.98 -0.02 4.16 16 14 C -0.51 -14.35 8.83 -34.44 -0.30 -14.65 16 15 H 0.06 1.75 7.79 -52.49 -0.41 1.34 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 18 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.02 0.28 7.30 -3.38 -0.02 0.25 16 23 C 0.16 2.35 6.31 -3.03 -0.02 2.34 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.09 0.98 7.57 -51.93 -0.39 0.59 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.39 3.06 7.58 -40.82 -0.31 2.75 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.87 7.99 -51.92 -0.41 0.46 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.35 7.79 -51.93 -0.40 0.94 16 37 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 38 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.00 -0.06 7.72 -51.93 -0.40 -0.46 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 42 H 0.06 1.10 7.71 -51.93 -0.40 0.70 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.09 1.51 8.00 -51.93 -0.42 1.09 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -33.00 354.65 -10.14 -43.14 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.78 Total: -0.91 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.07 Total: 1.26 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: -1.70 Total: -54.68 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.00 -10.14 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.003 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds