Wall clock time and date at job start Tue Mar 31 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46924 * 2 1 4 4 N 1.46505 * 109.46978 * 120.00339 * 2 1 3 5 5 C 1.34780 * 119.99664 * 155.00510 * 4 2 1 6 6 O 1.21583 * 120.00141 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99208 * 179.97438 * 5 4 2 8 8 C 1.46585 * 125.31215 * 0.02562 * 7 5 4 9 9 C 1.53277 * 108.15350 * 177.89078 * 8 7 5 10 10 H 1.09002 * 112.56911 * 222.74858 * 9 8 7 11 11 C 1.54790 * 109.73642 * 96.46604 * 9 8 7 12 12 C 1.56771 * 100.74735 * 211.84326 * 11 9 8 13 13 N 1.47771 * 104.99693 * 37.23964 * 12 11 9 14 14 C 1.46901 * 111.00481 * 214.07827 * 13 12 11 15 15 C 1.50692 * 109.46925 * 311.13964 * 14 13 12 16 16 H 1.08005 * 120.00518 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99894 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99876 * 179.97438 * 17 15 14 19 19 Si 1.86790 * 119.99844 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47482 * 89.99962 * 19 17 15 21 21 H 1.48500 * 109.47208 * 210.00244 * 19 17 15 22 22 H 1.48505 * 109.47293 * 329.99568 * 19 17 15 23 23 C 1.47629 * 108.79699 * 336.50561 * 13 12 11 24 24 H 1.09002 * 112.72931 * 235.95250 * 23 13 12 25 25 C 1.46614 * 125.30177 * 179.97438 * 7 5 4 26 26 H 1.08996 * 109.47047 * 299.99149 * 1 2 3 27 27 H 1.08991 * 109.47032 * 60.00009 * 1 2 3 28 28 H 1.09006 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47183 * 239.99988 * 2 1 3 30 30 H 1.09000 * 109.47108 * 300.00145 * 3 2 1 31 31 H 1.09003 * 109.47200 * 59.99999 * 3 2 1 32 32 H 1.08999 * 109.47234 * 179.97438 * 3 2 1 33 33 H 0.96996 * 120.00128 * 334.99286 * 4 2 1 34 34 H 1.08995 * 109.73374 * 58.20694 * 8 7 5 35 35 H 1.08994 * 109.71450 * 297.56309 * 8 7 5 36 36 H 1.08996 * 111.01023 * 329.55953 * 11 9 8 37 37 H 1.09005 * 111.00304 * 93.41667 * 11 9 8 38 38 H 1.09003 * 110.32773 * 278.33666 * 12 11 9 39 39 H 1.09003 * 110.35625 * 156.16175 * 12 11 9 40 40 H 1.09002 * 109.46938 * 71.13862 * 14 13 12 41 41 H 1.08996 * 109.46964 * 191.13928 * 14 13 12 42 42 H 0.97000 * 119.99433 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.91300 * 317.20022 * 25 7 5 44 44 H 1.08997 * 109.91582 * 78.29244 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 3.2404 -1.2592 1.1943 6 8 3.9373 -1.1992 0.1999 7 7 3.6898 -1.8941 2.2950 8 6 2.9500 -2.0365 3.5524 9 6 3.8026 -2.8689 4.5165 10 1 3.2169 -3.6113 5.0586 11 6 4.5930 -1.9297 5.4594 12 6 5.8909 -2.7767 5.6951 13 7 6.1651 -3.4258 4.3962 14 6 6.7495 -4.7599 4.5871 15 6 7.8868 -4.6738 5.5720 16 1 8.1490 -3.7231 6.0124 17 6 8.5921 -5.8089 5.9116 18 7 9.5850 -5.7336 6.7708 19 14 8.1382 -7.4531 5.1505 20 1 8.9108 -7.6488 3.8974 21 1 8.4576 -8.5453 6.1046 22 1 6.6852 -7.4727 4.8443 23 6 4.9064 -3.5044 3.6287 24 1 4.6613 -4.5221 3.3249 25 6 4.9944 -2.5511 2.4208 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.4623 -0.7387 1.9895 34 1 2.0031 -2.5434 3.3669 35 1 2.7628 -1.0525 3.9823 36 1 4.8250 -0.9858 4.9663 37 1 4.0483 -1.7599 6.3883 38 1 5.7180 -3.5282 6.4655 39 1 6.7205 -2.1287 5.9779 40 1 5.9877 -5.4388 4.9703 41 1 7.1223 -5.1331 3.6333 42 1 10.0809 -6.5322 7.0100 43 1 5.2137 -3.1175 1.5158 44 1 5.7711 -1.8051 2.5890 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277942061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:31 Heat of formation + Delta-G solvation = -19.541717 kcal Electronic energy + Delta-G solvation = -22777.554776 eV Core-core repulsion = 19536.758836 eV Total energy + Delta-G solvation = -3240.795940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58196 -39.03387 -36.23776 -35.37735 -32.91832 -31.67976 -31.38879 -29.07952 -28.27778 -27.48148 -26.00126 -23.71083 -22.14169 -21.38369 -20.37360 -20.03326 -19.53161 -18.08835 -16.68011 -16.29592 -16.08281 -15.35567 -14.85098 -14.56736 -14.32533 -14.03882 -13.78800 -13.66226 -13.10891 -13.06858 -12.67578 -12.60075 -12.50625 -12.39975 -12.33338 -12.03372 -11.77073 -11.62282 -11.19654 -11.17154 -10.77817 -10.60944 -10.49795 -10.41174 -10.33531 -10.03829 -9.83634 -9.24332 -9.22813 -8.62931 -8.41919 -7.50784 -6.09744 -4.08252 2.60688 3.23615 3.26877 3.34162 3.35483 3.92107 4.36606 4.40078 4.57955 4.67651 4.74467 4.80956 4.99113 5.05305 5.21762 5.29218 5.33361 5.37515 5.43047 5.45213 5.51114 5.54553 5.64763 5.72948 5.80168 5.85286 6.01379 6.04810 6.16026 6.21571 6.31979 6.34295 6.46267 6.58363 6.65743 6.77964 6.98566 7.07578 7.45645 7.85055 7.93722 7.98524 8.57106 8.62402 8.96459 9.51482 11.02971 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034960 B = 0.003533 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.724793 B = 7923.261255 C = 8167.930282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.154 3.846 3 C -0.164 4.164 4 N -0.744 5.744 5 C 0.721 3.279 6 O -0.590 6.590 7 N -0.630 5.630 8 C 0.112 3.888 9 C -0.120 4.120 10 H 0.096 0.904 11 C -0.127 4.127 12 C 0.065 3.935 13 N -0.512 5.512 14 C 0.157 3.843 15 C -0.518 4.518 16 H 0.082 0.918 17 C 0.070 3.930 18 N -0.898 5.898 19 Si 0.876 3.124 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.268 1.268 23 C 0.064 3.936 24 H 0.080 0.920 25 C 0.138 3.862 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.393 0.607 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.077 0.923 40 H -0.009 1.009 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.069 0.931 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.419 10.397 -7.741 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 C -0.223 4.223 4 N -0.400 5.400 5 C 0.423 3.577 6 O -0.468 6.468 7 N -0.368 5.368 8 C -0.012 4.012 9 C -0.140 4.140 10 H 0.114 0.886 11 C -0.165 4.165 12 C -0.062 4.062 13 N -0.236 5.236 14 C 0.030 3.970 15 C -0.556 4.556 16 H 0.100 0.900 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.703 3.297 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.193 1.193 23 C -0.046 4.046 24 H 0.098 0.902 25 C 0.015 3.985 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.227 0.773 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.008 0.992 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.388 10.650 -8.739 23.785 hybrid contribution -0.955 -1.522 0.578 1.887 sum -20.344 9.128 -8.161 23.744 Atomic orbital electron populations 1.22078 0.94322 1.02550 1.02785 1.20770 0.93385 0.92697 0.88249 1.22212 1.02458 0.95899 1.01710 1.45258 1.17226 1.60286 1.17229 1.15421 0.81658 0.78297 0.82344 1.90919 1.57389 1.65719 1.32739 1.47333 1.19442 1.58071 1.11955 1.21671 0.95082 0.99712 0.84686 1.23056 0.96725 0.97800 0.96381 0.88614 1.23158 0.96741 0.98148 0.98485 1.23152 0.95081 0.96534 0.91458 1.63384 1.20798 1.23045 1.16385 1.20361 0.94730 0.84782 0.97102 1.21087 1.13902 0.96724 1.23901 0.90002 1.24905 0.94660 0.98834 0.94776 1.69894 1.20893 1.29377 1.33545 0.86852 0.79350 0.84032 0.79482 1.20026 1.21239 1.19270 1.23187 0.89787 0.97753 0.93901 0.90217 1.21830 0.83143 0.95445 0.98101 0.92178 0.90908 0.92034 0.89468 0.91808 0.92697 0.91877 0.77277 0.92296 0.91748 0.91029 0.91033 0.92655 0.90480 0.99176 0.95473 0.92596 0.91220 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.38 37.16 0.35 -0.61 16 2 C 0.15 1.42 3.18 -67.93 -0.22 1.20 16 3 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 4 N -0.74 -7.82 5.03 -58.67 -0.30 -8.12 16 5 C 0.72 10.65 8.44 -86.92 -0.73 9.92 16 6 O -0.59 -11.10 16.29 5.29 0.09 -11.01 16 7 N -0.63 -8.82 3.31 -178.40 -0.59 -9.41 16 8 C 0.11 1.22 5.56 -3.85 -0.02 1.20 16 9 C -0.12 -1.54 3.84 -88.34 -0.34 -1.88 16 10 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 11 C -0.13 -1.71 6.37 -23.75 -0.15 -1.86 16 12 C 0.07 1.19 5.43 -1.31 -0.01 1.18 16 13 N -0.51 -10.27 4.79 -222.14 -1.06 -11.33 16 14 C 0.16 3.70 3.70 -4.98 -0.02 3.68 16 15 C -0.52 -14.33 8.88 -34.44 -0.31 -14.63 16 16 H 0.08 2.44 6.90 -52.48 -0.36 2.08 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 19 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 23 C 0.06 1.05 3.63 -65.53 -0.24 0.81 16 24 H 0.08 1.32 7.72 -51.93 -0.40 0.92 16 25 C 0.14 2.25 6.44 -3.39 -0.02 2.23 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.39 3.17 7.54 -40.82 -0.31 2.86 16 34 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 35 H 0.06 0.61 7.73 -51.93 -0.40 0.21 16 36 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.09 7.52 -51.93 -0.39 0.70 16 39 H 0.08 1.49 7.70 -51.93 -0.40 1.09 16 40 H -0.01 -0.22 7.11 -51.93 -0.37 -0.59 16 41 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 44 H 0.08 1.38 7.97 -51.93 -0.41 0.97 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -32.47 344.31 -9.65 -42.12 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.63 Total: 0.31 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -1.45 Total: 2.04 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -1.18 Total: -55.23 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.47 -9.65 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277942061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.581 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds