Wall clock time and date at job start Tue Mar 31 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47358 * 2 1 4 4 N 1.46498 * 109.47367 * 120.00138 * 2 1 3 5 5 C 1.34769 * 120.00233 * 154.99395 * 4 2 1 6 6 O 1.21591 * 120.00268 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00316 * 180.02562 * 5 4 2 8 8 C 1.47689 * 121.54732 * 0.02616 * 7 5 4 9 9 C 1.54196 * 106.98150 * 219.32796 * 8 7 5 10 10 H 1.09003 * 114.66562 * 159.55749 * 9 8 7 11 11 C 1.54231 * 110.87881 * 293.23185 * 9 8 7 12 12 C 1.54227 * 85.37381 * 81.32747 * 11 9 8 13 13 H 1.09001 * 115.95535 * 145.63906 * 12 11 9 14 14 C 1.47684 * 121.55504 * 180.02562 * 7 5 4 15 15 N 1.48494 * 84.84799 * 28.51781 * 12 11 9 16 16 C 1.46905 * 111.00515 * 218.00016 * 15 12 11 17 17 C 1.52994 * 109.46852 * 309.88737 * 16 15 12 18 18 C 1.50697 * 109.47013 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00398 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00038 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99854 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99999 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47399 * 89.99936 * 22 20 18 24 24 H 1.48504 * 109.47359 * 209.99984 * 22 20 18 25 25 H 1.48503 * 109.46934 * 329.99937 * 22 20 18 26 26 H 1.09007 * 109.47280 * 299.99757 * 1 2 3 27 27 H 1.09001 * 109.47739 * 59.99653 * 1 2 3 28 28 H 1.08999 * 109.47488 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46664 * 239.99823 * 2 1 3 30 30 H 1.09000 * 109.47113 * 59.99841 * 3 2 1 31 31 H 1.08996 * 109.47365 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46865 * 300.00036 * 3 2 1 33 33 H 0.97001 * 119.99826 * 335.00169 * 4 2 1 34 34 H 1.08993 * 109.95018 * 338.69720 * 8 7 5 35 35 H 1.08998 * 109.94824 * 99.87451 * 8 7 5 36 36 H 1.08994 * 113.88721 * 327.21563 * 11 9 8 37 37 H 1.08996 * 113.88480 * 195.43598 * 11 9 8 38 38 H 1.09000 * 109.95064 * 21.29690 * 14 7 5 39 39 H 1.09000 * 110.01685 * 260.07857 * 14 7 5 40 40 H 1.09002 * 109.46786 * 69.88419 * 16 15 12 41 41 H 1.08994 * 109.47238 * 189.88692 * 16 15 12 42 42 H 1.09003 * 109.47331 * 299.99977 * 17 16 15 43 43 H 1.09003 * 109.47251 * 59.99702 * 17 16 15 44 44 H 0.97008 * 119.99791 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2402 -1.2592 1.1943 6 8 3.9375 -1.1987 0.2000 7 7 3.6893 -1.8951 2.2946 8 6 2.8711 -1.9897 3.5204 9 6 3.8277 -1.8058 4.7157 10 1 3.3426 -1.5060 5.6446 11 6 4.8115 -2.9891 4.8195 12 6 5.6150 -2.2547 3.7269 13 1 6.6992 -2.3489 3.7875 14 6 5.0225 -2.5295 2.3305 15 7 5.0214 -1.0231 4.3064 16 6 4.6816 -0.0566 3.2536 17 6 5.8867 0.1375 2.3313 18 6 5.5380 1.1285 1.2509 19 1 4.5549 1.5750 1.2244 20 6 6.4739 1.4652 0.2960 21 7 6.1693 2.3297 -0.6471 22 14 8.1744 0.6936 0.3420 23 1 8.1724 -0.5571 -0.4585 24 1 9.1646 1.6434 -0.2262 25 1 8.5383 0.3812 1.7475 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.4622 -0.7387 1.9894 34 1 2.1153 -1.2044 3.5247 35 1 2.3917 -2.9672 3.5730 36 1 4.3925 -3.9413 4.4944 37 1 5.3261 -3.0524 5.7782 38 1 5.6622 -2.0944 1.5627 39 1 4.9288 -3.6038 2.1713 40 1 3.8376 -0.4317 2.6747 41 1 4.4149 0.8973 3.7085 42 1 6.7307 0.5125 2.9102 43 1 6.1535 -0.8165 1.8764 44 1 6.8279 2.5669 -1.3187 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277945065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:26 Heat of formation + Delta-G solvation = 99.914047 kcal Electronic energy + Delta-G solvation = -24970.772684 eV Core-core repulsion = 21735.156734 eV Total energy + Delta-G solvation = -3235.615949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.24573 -38.91279 -35.55994 -33.98144 -33.35053 -31.26004 -31.04752 -29.77053 -27.61043 -26.75781 -25.36492 -23.31528 -22.63585 -21.20426 -20.36696 -19.82287 -18.35739 -17.92621 -16.56643 -16.09467 -15.91731 -15.16109 -14.86171 -14.39599 -14.05899 -13.96904 -13.73921 -13.22714 -12.91773 -12.60778 -12.44099 -12.25821 -12.06744 -12.01660 -11.82637 -11.60002 -11.41303 -11.11174 -10.92515 -10.83785 -10.47373 -10.41156 -10.23921 -9.74623 -9.69046 -9.46335 -9.42791 -9.09663 -8.81081 -8.53714 -8.26057 -7.07859 -5.80693 -3.72328 2.88679 3.45633 3.51324 3.54887 3.79708 4.09340 4.32626 4.51908 4.66119 4.73027 5.02740 5.18366 5.28108 5.33968 5.35377 5.37243 5.51685 5.54916 5.67197 5.72725 5.85004 5.91484 5.96174 6.06151 6.09241 6.12465 6.16262 6.22769 6.32883 6.49683 6.55923 6.64740 6.97576 7.02220 7.13657 7.24705 7.27635 7.31416 7.58781 7.73735 8.06309 8.35060 8.77706 9.17788 9.23519 9.84564 11.33285 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.010729 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.764028 B = 2609.022758 C = 4314.328315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.160 3.840 3 C -0.172 4.172 4 N -0.745 5.745 5 C 0.715 3.285 6 O -0.537 6.537 7 N -0.630 5.630 8 C 0.099 3.901 9 C 0.005 3.995 10 H 0.110 0.890 11 C -0.133 4.133 12 C 0.016 3.984 13 H 0.110 0.890 14 C 0.114 3.886 15 N -0.460 5.460 16 C -0.038 4.038 17 C -0.015 4.015 18 C -0.487 4.487 19 H 0.071 0.929 20 C 0.071 3.929 21 N -0.906 5.906 22 Si 0.871 3.129 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.269 1.269 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.386 0.614 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.047 0.953 42 H 0.007 0.993 43 H 0.024 0.976 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.957 -10.952 8.384 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 C -0.231 4.231 4 N -0.403 5.403 5 C 0.418 3.582 6 O -0.409 6.409 7 N -0.372 5.372 8 C -0.025 4.025 9 C -0.106 4.106 10 H 0.128 0.872 11 C -0.170 4.170 12 C -0.094 4.094 13 H 0.128 0.872 14 C -0.010 4.010 15 N -0.182 5.182 16 C -0.166 4.166 17 C -0.052 4.052 18 C -0.525 4.525 19 H 0.089 0.911 20 C -0.128 4.128 21 N -0.547 5.547 22 Si 0.699 3.301 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.194 1.194 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.220 0.780 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.066 0.934 42 H 0.025 0.975 43 H 0.041 0.959 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.999 -10.369 7.867 16.413 hybrid contribution 0.267 -0.490 -0.156 0.579 sum -9.731 -10.859 7.710 16.494 Atomic orbital electron populations 1.22086 0.95204 1.01716 1.02527 1.20726 0.92318 0.93646 0.87762 1.22348 1.05960 0.94364 1.00391 1.45343 1.17242 1.60639 1.17078 1.15314 0.81772 0.78325 0.82811 1.91046 1.55379 1.62557 1.31889 1.47805 1.18322 1.58762 1.12279 1.22130 0.93901 1.01558 0.84921 1.24060 0.93111 0.95904 0.97497 0.87174 1.23617 0.97315 0.96334 0.99776 1.24012 1.00336 0.92613 0.92420 0.87187 1.22382 0.83348 0.96477 0.98758 1.69395 1.12580 1.05760 1.30502 1.24092 1.04414 0.94488 0.93592 1.19871 0.93346 0.97578 0.94420 1.20868 1.00274 1.22701 1.08698 0.91119 1.24843 0.97921 0.94811 0.95263 1.69888 1.34659 1.34395 1.15721 0.86924 0.85448 0.79385 0.78336 1.20517 1.21886 1.19389 0.92503 0.91153 0.92645 0.89777 0.93643 0.88267 0.92730 0.77999 0.90316 0.91125 0.91457 0.89136 0.86495 0.92160 0.86946 0.93425 0.97505 0.95879 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.38 37.16 0.35 -1.40 16 2 C 0.16 2.53 3.18 -67.93 -0.22 2.32 16 3 C -0.17 -3.20 9.48 37.16 0.35 -2.85 16 4 N -0.75 -11.79 4.91 -58.93 -0.29 -12.08 16 5 C 0.72 13.84 5.64 -86.92 -0.49 13.35 16 6 O -0.54 -13.17 14.53 5.29 0.08 -13.09 16 7 N -0.63 -10.42 1.67 -176.33 -0.29 -10.72 16 8 C 0.10 1.22 5.39 -2.77 -0.01 1.21 16 9 C 0.00 0.06 5.42 -65.78 -0.36 -0.30 16 10 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 11 C -0.13 -1.55 7.49 -25.66 -0.19 -1.74 16 12 C 0.02 0.26 4.48 -65.80 -0.29 -0.04 16 13 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 14 C 0.11 1.92 5.29 -2.79 -0.01 1.91 16 15 N -0.46 -8.07 6.44 -229.21 -1.48 -9.54 16 16 C -0.04 -0.80 4.65 -3.82 -0.02 -0.82 16 17 C -0.02 -0.38 3.03 -27.89 -0.08 -0.46 16 18 C -0.49 -14.18 8.35 -34.44 -0.29 -14.47 16 19 H 0.07 2.20 6.06 -52.49 -0.32 1.88 16 20 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 21 N -0.91 -28.81 13.96 55.43 0.77 -28.04 16 22 Si 0.87 23.29 27.47 -169.99 -4.67 18.62 16 23 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 25 H -0.27 -6.98 6.54 56.52 0.37 -6.61 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 2.46 6.17 -51.93 -0.32 2.14 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.39 4.88 6.33 -40.82 -0.26 4.62 16 34 H 0.08 0.88 6.09 -51.93 -0.32 0.56 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.12 2.46 4.78 -51.93 -0.25 2.21 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.11 2.23 1.57 -107.69 -0.17 2.06 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.01 0.18 7.20 -51.93 -0.37 -0.19 16 43 H 0.02 0.59 3.43 -51.93 -0.18 0.41 16 44 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 322.10 15.07 4.85 4.85 Total: -1.00 -35.06 322.10 -9.20 -44.26 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.81 Total: 6.97 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.37 Total: -1.23 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -1.28 Total: -60.38 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.67 Total: 18.62 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.06 -9.20 -44.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277945065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.177 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds