Wall clock time and date at job start Tue Mar 31 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46811 * 2 1 4 4 N 1.46497 * 109.47064 * 119.99666 * 2 1 3 5 5 C 1.34784 * 119.99784 * 154.99787 * 4 2 1 6 6 O 1.21586 * 119.99955 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99647 * 179.97438 * 5 4 2 8 8 C 1.48080 * 134.66434 * 359.91083 * 7 5 4 9 9 C 1.54157 * 86.29400 * 203.70924 * 8 7 5 10 10 C 1.46419 * 134.69631 * 179.97438 * 7 5 4 11 11 C 1.52838 * 121.53775 * 281.86596 * 10 7 5 12 12 N 1.48184 * 85.79174 * 102.89570 * 11 10 7 13 13 C 1.46904 * 111.00149 * 136.84203 * 12 11 10 14 14 C 1.53003 * 109.46798 * 90.34331 * 13 12 11 15 15 C 1.50703 * 109.46913 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99829 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00265 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99573 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00418 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47155 * 59.99933 * 19 17 15 21 21 H 1.48498 * 109.47182 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47116 * 300.00179 * 19 17 15 23 23 C 1.48180 * 91.02056 * 23.84220 * 12 11 10 24 24 H 1.09002 * 109.46996 * 299.99958 * 1 2 3 25 25 H 1.08994 * 109.47436 * 59.99892 * 1 2 3 26 26 H 1.09000 * 109.47279 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47390 * 240.00151 * 2 1 3 28 28 H 1.08994 * 109.47256 * 299.99692 * 3 2 1 29 29 H 1.09002 * 109.47306 * 60.00232 * 3 2 1 30 30 H 1.09003 * 109.46872 * 179.97438 * 3 2 1 31 31 H 0.96996 * 120.00491 * 335.00029 * 4 2 1 32 32 H 1.09003 * 113.72571 * 89.38515 * 8 7 5 33 33 H 1.08996 * 113.79825 * 318.05173 * 8 7 5 34 34 H 1.09002 * 113.80962 * 223.05121 * 9 8 7 35 35 H 1.09001 * 113.80792 * 91.64867 * 9 8 7 36 36 H 1.09003 * 113.82268 * 217.10872 * 11 10 7 37 37 H 1.08998 * 113.82612 * 348.68067 * 11 10 7 38 38 H 1.09000 * 109.47217 * 210.34009 * 13 12 11 39 39 H 1.08998 * 109.47079 * 330.34472 * 13 12 11 40 40 H 1.09000 * 109.46973 * 299.99827 * 14 13 12 41 41 H 1.08998 * 109.47190 * 60.00209 * 14 13 12 42 42 H 0.97001 * 119.99552 * 179.97438 * 18 17 15 43 43 H 1.08999 * 113.82645 * 221.94155 * 23 12 11 44 44 H 1.09005 * 113.82345 * 90.37052 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 3.2404 -1.2591 1.1944 6 8 3.9376 -1.1986 0.2001 7 7 3.6898 -1.8940 2.2951 8 6 3.1377 -2.1562 3.6438 9 6 4.6016 -2.2959 4.1065 10 6 4.9223 -2.6034 2.6436 11 6 5.1841 -4.0322 2.1681 12 7 6.0875 -3.4172 1.1674 13 6 7.3405 -4.1755 1.0529 14 6 7.1896 -5.2498 -0.0260 15 6 8.4752 -6.0273 -0.1439 16 1 9.3156 -5.7802 0.4879 17 6 8.5782 -7.0548 -1.0575 18 7 7.5546 -7.3560 -1.8265 19 14 10.1714 -8.0190 -1.2031 20 1 10.4804 -8.6639 0.0983 21 1 10.0250 -9.0616 -2.2504 22 1 11.2755 -7.0976 -1.5735 23 6 6.2667 -2.2219 2.0246 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.4623 -0.7386 1.9895 32 1 2.5662 -3.0819 3.7114 33 1 2.6192 -1.3026 4.0804 34 1 4.7720 -3.1357 4.7801 35 1 5.0398 -1.3652 4.4670 36 1 5.6977 -4.6533 2.9019 37 1 4.3109 -4.5183 1.7329 38 1 8.1510 -3.4992 0.7814 39 1 7.5670 -4.6492 2.0081 40 1 6.3791 -5.9261 0.2455 41 1 6.9631 -4.7761 -0.9812 42 1 7.6272 -8.0786 -2.4695 43 1 6.2474 -1.2800 1.4764 44 1 7.1066 -2.2973 2.7153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277945073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:40 Heat of formation + Delta-G solvation = 38.172811 kcal Electronic energy + Delta-G solvation = -22522.541699 eV Core-core repulsion = 19284.248449 eV Total energy + Delta-G solvation = -3238.293250 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.08453 -39.04286 -36.79506 -35.69436 -33.20840 -31.74696 -30.44020 -28.98080 -27.39685 -26.56373 -25.93606 -23.90609 -22.62472 -21.75861 -20.67860 -19.98123 -19.02788 -17.07619 -16.39812 -16.17160 -15.99999 -15.29350 -14.87161 -14.70375 -14.40603 -14.15976 -13.91226 -13.65419 -13.08943 -12.91617 -12.54387 -12.38211 -12.34667 -12.27242 -12.09664 -11.88732 -11.71806 -11.53435 -11.13218 -11.08466 -10.90845 -10.84836 -10.53657 -10.31276 -9.76451 -9.68956 -9.28773 -9.08032 -9.00949 -8.49705 -8.26148 -8.01645 -5.90971 -3.93951 2.44602 3.37824 3.38107 3.42008 3.44353 3.77238 4.21340 4.44939 4.55411 4.61480 4.68699 4.83538 4.90758 5.05187 5.08581 5.17947 5.35286 5.37038 5.44071 5.52411 5.55843 5.58621 5.59638 5.69064 5.75338 5.85165 5.92514 5.97676 6.00097 6.12753 6.23855 6.29423 6.47589 6.58639 6.96586 7.18810 7.24862 7.58199 7.83718 8.00011 8.16128 8.19718 8.51592 8.80944 9.13811 9.69026 11.20324 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022725 B = 0.003526 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.822522 B = 7939.164705 C = 8653.707555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 C -0.163 4.163 4 N -0.745 5.745 5 C 0.722 3.278 6 O -0.560 6.560 7 N -0.638 5.638 8 C 0.102 3.898 9 C -0.141 4.141 10 C 0.157 3.843 11 C 0.011 3.989 12 N -0.460 5.460 13 C 0.029 3.971 14 C 0.034 3.966 15 C -0.522 4.522 16 H 0.053 0.947 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.005 3.995 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.390 0.610 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.029 0.971 40 H 0.013 0.987 41 H 0.024 0.976 42 H 0.260 0.740 43 H 0.091 0.909 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.931 15.360 13.764 25.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 C -0.221 4.221 4 N -0.401 5.401 5 C 0.425 3.575 6 O -0.435 6.435 7 N -0.377 5.377 8 C -0.021 4.021 9 C -0.179 4.179 10 C 0.070 3.930 11 C -0.120 4.120 12 N -0.182 5.182 13 C -0.099 4.099 14 C -0.003 4.003 15 C -0.561 4.561 16 H 0.071 0.929 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.125 4.125 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.223 0.777 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.032 0.968 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.741 15.475 11.934 24.478 hybrid contribution 0.864 -0.847 0.958 1.543 sum -13.878 14.628 12.892 23.933 Atomic orbital electron populations 1.22067 0.94401 1.02552 1.02611 1.20764 0.93306 0.92596 0.88403 1.22204 1.02423 0.95984 1.01530 1.45217 1.17101 1.60781 1.16994 1.15521 0.81593 0.78454 0.81885 1.91018 1.56631 1.64416 1.31399 1.48884 1.19564 1.57020 1.12222 1.23165 0.96855 1.00898 0.81177 1.23370 0.95546 1.03262 0.95759 1.22633 0.86210 0.93917 0.90228 1.24137 0.99111 0.94001 0.94727 1.68765 1.12380 1.03347 1.33687 1.22869 0.90139 0.96967 0.99890 1.18943 0.96447 0.91625 0.93327 1.21190 0.98895 1.16011 1.20046 0.92913 1.25009 0.96349 0.97295 0.95719 1.69987 1.30141 1.30156 1.22888 0.86662 0.84012 0.79687 0.77626 1.20334 1.21300 1.20260 1.23980 0.94465 0.98420 0.95652 0.92366 0.90932 0.92005 0.89297 0.91835 0.92916 0.91918 0.77745 0.89904 0.90502 0.89336 0.88717 0.90069 0.89554 0.92272 0.95272 0.96821 0.95803 0.93007 0.89040 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.38 37.16 0.35 -0.78 16 2 C 0.15 1.62 3.18 -67.93 -0.22 1.40 16 3 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 4 N -0.74 -8.42 5.08 -58.67 -0.30 -8.72 16 5 C 0.72 11.34 8.72 -86.91 -0.76 10.58 16 6 O -0.56 -11.67 16.11 5.29 0.09 -11.59 16 7 N -0.64 -8.53 3.62 -172.62 -0.62 -9.16 16 8 C 0.10 0.85 8.48 -2.72 -0.02 0.82 16 9 C -0.14 -1.24 8.06 -26.21 -0.21 -1.45 16 10 C 0.16 2.19 1.72 -137.09 -0.24 1.95 16 11 C 0.01 0.18 7.86 -3.20 -0.03 0.15 16 12 N -0.46 -9.46 6.15 -244.38 -1.50 -10.97 16 13 C 0.03 0.66 4.73 -3.82 -0.02 0.64 16 14 C 0.03 0.96 5.28 -27.88 -0.15 0.81 16 15 C -0.52 -15.52 9.11 -34.44 -0.31 -15.83 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -28.13 13.29 55.43 0.74 -27.40 16 19 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.00 0.08 7.50 -3.20 -0.02 0.05 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.39 3.25 8.23 -40.82 -0.34 2.91 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.24 7.48 -51.93 -0.39 0.85 16 37 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.06 1.34 8.08 -51.93 -0.42 0.92 16 39 H 0.03 0.62 7.39 -51.93 -0.38 0.23 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.09 1.66 7.84 -51.93 -0.41 1.25 16 44 H 0.07 1.07 7.92 -51.93 -0.41 0.65 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -36.76 360.50 -10.34 -47.10 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.78 Total: -0.79 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -1.37 Total: -1.26 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -1.69 Total: -56.24 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.76 -10.34 -47.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277945073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.273 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds