Wall clock time and date at job start Tue Mar 31 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30835 * 125.90089 * 2 1 4 4 N 1.40079 * 108.20792 * 180.26157 * 3 2 1 5 5 C 1.46498 * 126.04110 * 179.74150 * 4 3 2 6 6 C 1.53005 * 109.46898 * 269.97583 * 5 4 3 7 7 O 1.42907 * 109.46947 * 179.97438 * 6 5 4 8 8 C 1.34947 * 107.92440 * 359.71701 * 4 3 2 9 9 C 1.50699 * 126.12896 * 179.97438 * 8 4 3 10 10 C 1.35321 * 107.74574 * 0.02562 * 8 4 3 11 11 C 1.50704 * 126.03943 * 180.02562 * 10 8 4 12 12 N 1.46895 * 109.47030 * 89.99503 * 11 10 8 13 13 C 1.46906 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47053 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.46891 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46946 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99908 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99697 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47158 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47233 * 119.99727 * 20 18 16 23 23 H 1.48498 * 109.47163 * 239.99655 * 20 18 16 24 24 H 1.09002 * 109.46942 * 270.20760 * 1 2 3 25 25 H 1.09001 * 109.47386 * 30.20897 * 1 2 3 26 26 H 1.08999 * 109.47417 * 150.21157 * 1 2 3 27 27 H 1.09001 * 109.47172 * 29.97063 * 5 4 3 28 28 H 1.09000 * 109.47511 * 149.97612 * 5 4 3 29 29 H 1.08994 * 109.47081 * 299.99508 * 6 5 4 30 30 H 1.09002 * 109.47138 * 60.00256 * 6 5 4 31 31 H 0.96698 * 114.00009 * 179.97438 * 7 6 5 32 32 H 1.09003 * 109.47487 * 270.02680 * 9 8 4 33 33 H 1.09001 * 109.46746 * 30.03068 * 9 8 4 34 34 H 1.08997 * 109.47501 * 150.02612 * 9 8 4 35 35 H 1.08996 * 109.46908 * 329.99321 * 11 10 8 36 36 H 1.09002 * 109.46622 * 209.99495 * 11 10 8 37 37 H 1.00899 * 111.00672 * 56.04735 * 12 11 10 38 38 H 1.08992 * 109.47459 * 299.99826 * 13 12 11 39 39 H 1.09004 * 109.47040 * 59.99976 * 13 12 11 40 40 H 1.09001 * 109.47142 * 300.00160 * 14 13 12 41 41 H 1.09004 * 109.47006 * 60.00213 * 14 13 12 42 42 H 1.09001 * 109.47372 * 300.00036 * 15 14 13 43 43 H 1.08996 * 109.47261 * 60.00575 * 15 14 13 44 44 H 0.97007 * 119.99539 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0061 5 6 4.7899 1.5007 -0.0135 6 6 5.1941 1.7995 -1.4586 7 8 6.3460 2.6453 -1.4658 8 6 3.6142 -0.7154 -0.0034 9 6 4.8350 -1.5990 -0.0085 10 6 2.3271 -1.1330 0.0036 11 6 1.8599 -2.5658 0.0093 12 7 1.7146 -3.0279 1.3960 13 6 1.2589 -4.4238 1.4407 14 6 1.1202 -4.8686 2.8981 15 6 0.6450 -6.3222 2.9446 16 6 0.5078 -6.7601 4.3800 17 1 0.7363 -6.0705 5.1792 18 6 0.0906 -8.0412 4.6731 19 7 -0.1880 -8.8807 3.6999 20 14 -0.0801 -8.5838 6.4524 21 1 0.2905 -7.4605 7.3502 22 1 -1.4856 -8.9849 6.7149 23 1 0.8196 -9.7376 6.7065 24 1 -0.3633 0.0037 1.0277 25 1 -0.3634 0.8881 -0.5171 26 1 -0.3634 -0.8919 -0.5105 27 1 4.5588 2.4342 0.4996 28 1 5.6118 0.9991 0.4974 29 1 5.4252 0.8661 -1.9716 30 1 4.3722 2.3012 -1.9694 31 1 6.6590 2.8760 -2.3512 32 1 5.1238 -1.8137 -1.0373 33 1 5.6538 -1.0902 0.5002 34 1 4.6103 -2.5321 0.5081 35 1 2.5909 -3.1883 -0.5065 36 1 0.8987 -2.6364 -0.4999 37 1 1.0906 -2.4275 1.9139 38 1 0.2935 -4.5070 0.9417 39 1 1.9855 -5.0596 0.9347 40 1 2.0859 -4.7855 3.3968 41 1 0.3938 -4.2329 3.4044 42 1 -0.3207 -6.4049 2.4460 43 1 1.3710 -6.9582 2.4382 44 1 -0.4819 -9.7819 3.9061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318339939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:07 Heat of formation + Delta-G solvation = 2.231355 kcal Electronic energy + Delta-G solvation = -21440.833366 eV Core-core repulsion = 18200.981577 eV Total energy + Delta-G solvation = -3239.851789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53649 -37.62288 -36.41748 -34.49033 -33.59708 -32.41490 -31.13176 -30.21413 -28.13078 -26.96542 -26.08721 -24.21203 -22.81377 -22.05380 -20.24155 -19.65075 -19.46276 -18.09333 -16.31470 -16.15682 -15.88254 -15.78397 -15.47440 -14.60579 -14.36104 -14.04438 -14.02476 -13.75329 -13.46810 -13.33709 -13.07635 -12.68061 -12.57645 -12.40354 -12.22595 -11.97713 -11.87317 -11.68700 -11.49340 -11.29511 -10.82044 -10.61036 -10.53833 -10.48752 -10.40870 -9.64357 -9.32825 -9.18303 -9.01550 -8.43563 -8.31197 -8.01009 -5.96385 -3.97955 1.69990 2.15773 2.62170 3.33589 3.40912 3.45749 3.81407 4.18355 4.48595 4.50312 4.57121 4.62845 4.74212 4.77603 4.91331 5.11721 5.21555 5.22359 5.33248 5.36527 5.38902 5.39586 5.50747 5.75428 5.77080 5.82349 5.86808 5.93881 6.05241 6.21099 6.38982 6.60403 6.78409 6.83797 6.89801 6.99892 7.19500 7.44909 7.63693 7.72546 7.74761 7.88951 8.04807 8.48481 9.09662 9.65847 11.15101 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.002529 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.131077 B =11068.919797 C =11433.601456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.085 3.915 3 N -0.301 5.301 4 N -0.374 5.374 5 C 0.137 3.863 6 C 0.063 3.937 7 O -0.570 6.570 8 C 0.106 3.894 9 C -0.095 4.095 10 C -0.228 4.228 11 C 0.137 3.863 12 N -0.687 5.687 13 C 0.059 3.941 14 C -0.106 4.106 15 C 0.021 3.979 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.388 0.612 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.337 0.663 38 H 0.024 0.976 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.044 0.956 42 H 0.014 0.986 43 H 0.016 0.984 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.555 20.840 -13.539 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 N -0.122 5.122 4 N -0.158 5.158 5 C 0.015 3.985 6 C -0.016 4.016 7 O -0.375 6.375 8 C -0.021 4.021 9 C -0.153 4.153 10 C -0.239 4.239 11 C 0.007 3.993 12 N -0.318 5.318 13 C -0.070 4.070 14 C -0.144 4.144 15 C -0.016 4.016 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.155 0.845 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.270 21.815 -12.866 27.329 hybrid contribution -0.973 -1.062 0.057 1.442 sum 9.297 20.752 -12.809 26.099 Atomic orbital electron populations 1.20204 0.86769 1.03159 1.03231 1.22245 0.96780 0.90422 0.98763 1.77304 0.86020 1.22463 1.26436 1.48143 1.04969 1.03935 1.58754 1.21263 0.84595 0.95777 0.96897 1.22444 0.88300 0.94094 0.96786 1.86376 1.46535 1.70179 1.34454 1.20876 0.97134 0.84016 1.00038 1.20522 0.92600 0.99212 1.03005 1.19658 0.91149 0.95974 1.17143 1.20104 0.99037 0.89552 0.90611 1.60624 1.55308 1.03913 1.11913 1.22130 0.97612 0.87773 0.99469 1.21611 1.00634 0.99481 0.92692 1.19073 0.96211 0.89415 0.96916 1.21310 1.44379 0.97226 0.92584 0.92646 1.25037 0.95615 0.96845 0.97121 1.69980 1.46376 1.06034 1.31258 0.86549 0.77617 0.78601 0.85317 1.19739 1.21074 1.21049 0.90284 0.91027 0.90419 0.88093 0.88203 0.92989 0.92669 0.76449 0.90544 0.91305 0.88378 0.90861 0.94843 0.84539 0.95822 0.91572 0.92660 0.93732 0.96811 0.96601 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.26 36.01 0.37 -0.38 16 2 C 0.08 1.08 7.22 -82.41 -0.59 0.48 16 3 N -0.30 -4.06 12.57 33.67 0.42 -3.64 16 4 N -0.37 -4.35 3.61 -57.14 -0.21 -4.55 16 5 C 0.14 1.20 6.61 -4.04 -0.03 1.17 16 6 C 0.06 0.45 7.37 37.16 0.27 0.73 16 7 O -0.57 -3.84 13.66 -35.23 -0.48 -4.32 16 8 C 0.11 1.24 6.93 -82.26 -0.57 0.67 16 9 C -0.10 -0.85 9.72 36.00 0.35 -0.50 16 10 C -0.23 -2.89 5.61 -105.05 -0.59 -3.48 16 11 C 0.14 1.74 5.59 -4.98 -0.03 1.71 16 12 N -0.69 -10.19 6.49 -115.06 -0.75 -10.93 16 13 C 0.06 1.01 5.68 -3.82 -0.02 0.99 16 14 C -0.11 -2.22 5.41 -26.73 -0.14 -2.37 16 15 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 16 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 20 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.70 7.25 -51.93 -0.38 0.33 16 27 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.10 0.74 7.05 -51.93 -0.37 0.38 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.39 0.87 9.12 45.56 0.42 1.29 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.52 7.08 -51.93 -0.37 0.15 16 34 H 0.10 0.98 7.77 -51.93 -0.40 0.58 16 35 H 0.07 0.90 7.77 -51.93 -0.40 0.49 16 36 H 0.03 0.41 7.25 -51.93 -0.38 0.03 16 37 H 0.34 4.95 8.72 -39.29 -0.34 4.61 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -33.76 366.21 -8.14 -41.90 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.84 Total: -0.15 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.53 Total: -14.25 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.21 Total: -45.62 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.48 Total: -4.32 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.76 -8.14 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318339939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.133 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds