Wall clock time and date at job start Tue Mar 31 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30835 * 125.90089 * 2 1 4 4 N 1.40079 * 108.20792 * 180.26157 * 3 2 1 5 5 C 1.46498 * 126.04110 * 179.74150 * 4 3 2 6 6 C 1.53005 * 109.46898 * 269.97583 * 5 4 3 7 7 O 1.42907 * 109.46947 * 179.97438 * 6 5 4 8 8 C 1.34947 * 107.92440 * 359.71701 * 4 3 2 9 9 C 1.50699 * 126.12896 * 179.97438 * 8 4 3 10 10 C 1.35321 * 107.74574 * 0.02562 * 8 4 3 11 11 C 1.50704 * 126.03943 * 180.02562 * 10 8 4 12 12 N 1.46895 * 109.47030 * 89.99503 * 11 10 8 13 13 C 1.46906 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47053 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.46891 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46946 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99908 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99697 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47158 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47233 * 119.99727 * 20 18 16 23 23 H 1.48498 * 109.47163 * 239.99655 * 20 18 16 24 24 H 1.09002 * 109.46942 * 270.20760 * 1 2 3 25 25 H 1.09001 * 109.47386 * 30.20897 * 1 2 3 26 26 H 1.08999 * 109.47417 * 150.21157 * 1 2 3 27 27 H 1.09001 * 109.47172 * 29.97063 * 5 4 3 28 28 H 1.09000 * 109.47511 * 149.97612 * 5 4 3 29 29 H 1.08994 * 109.47081 * 299.99508 * 6 5 4 30 30 H 1.09002 * 109.47138 * 60.00256 * 6 5 4 31 31 H 0.96698 * 114.00009 * 179.97438 * 7 6 5 32 32 H 1.09003 * 109.47487 * 270.02680 * 9 8 4 33 33 H 1.09001 * 109.46746 * 30.03068 * 9 8 4 34 34 H 1.08997 * 109.47501 * 150.02612 * 9 8 4 35 35 H 1.08996 * 109.46908 * 329.99321 * 11 10 8 36 36 H 1.09002 * 109.46622 * 209.99495 * 11 10 8 37 37 H 1.00899 * 111.00672 * 56.04735 * 12 11 10 38 38 H 1.08992 * 109.47459 * 299.99826 * 13 12 11 39 39 H 1.09004 * 109.47040 * 59.99976 * 13 12 11 40 40 H 1.09001 * 109.47142 * 300.00160 * 14 13 12 41 41 H 1.09004 * 109.47006 * 60.00213 * 14 13 12 42 42 H 1.09001 * 109.47372 * 300.00036 * 15 14 13 43 43 H 1.08996 * 109.47261 * 60.00575 * 15 14 13 44 44 H 0.97007 * 119.99539 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0061 5 6 4.7899 1.5007 -0.0135 6 6 5.1941 1.7995 -1.4586 7 8 6.3460 2.6453 -1.4658 8 6 3.6142 -0.7154 -0.0034 9 6 4.8350 -1.5990 -0.0085 10 6 2.3271 -1.1330 0.0036 11 6 1.8599 -2.5658 0.0093 12 7 1.7146 -3.0279 1.3960 13 6 1.2589 -4.4238 1.4407 14 6 1.1202 -4.8686 2.8981 15 6 0.6450 -6.3222 2.9446 16 6 0.5078 -6.7601 4.3800 17 1 0.7363 -6.0705 5.1792 18 6 0.0906 -8.0412 4.6731 19 7 -0.1880 -8.8807 3.6999 20 14 -0.0801 -8.5838 6.4524 21 1 0.2905 -7.4605 7.3502 22 1 -1.4856 -8.9849 6.7149 23 1 0.8196 -9.7376 6.7065 24 1 -0.3633 0.0037 1.0277 25 1 -0.3634 0.8881 -0.5171 26 1 -0.3634 -0.8919 -0.5105 27 1 4.5588 2.4342 0.4996 28 1 5.6118 0.9991 0.4974 29 1 5.4252 0.8661 -1.9716 30 1 4.3722 2.3012 -1.9694 31 1 6.6590 2.8760 -2.3512 32 1 5.1238 -1.8137 -1.0373 33 1 5.6538 -1.0902 0.5002 34 1 4.6103 -2.5321 0.5081 35 1 2.5909 -3.1883 -0.5065 36 1 0.8987 -2.6364 -0.4999 37 1 1.0906 -2.4275 1.9139 38 1 0.2935 -4.5070 0.9417 39 1 1.9855 -5.0596 0.9347 40 1 2.0859 -4.7855 3.3968 41 1 0.3938 -4.2329 3.4044 42 1 -0.3207 -6.4049 2.4460 43 1 1.3710 -6.9582 2.4382 44 1 -0.4819 -9.7819 3.9061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318339939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:06 Heat of formation + Delta-G solvation = -22.538367 kcal Electronic energy + Delta-G solvation = -21441.907462 eV Core-core repulsion = 18200.981577 eV Total energy + Delta-G solvation = -3240.925884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.41203 -38.21082 -37.68744 -35.68508 -35.07418 -33.74560 -32.48845 -31.13303 -29.30686 -27.74345 -27.60813 -25.47884 -23.87823 -23.36078 -21.91930 -20.56134 -20.37734 -18.67743 -18.46098 -16.94792 -16.84489 -16.69701 -16.50458 -16.35008 -15.45834 -15.41000 -14.90664 -14.76122 -14.41583 -14.25694 -14.17137 -14.04765 -13.53785 -13.38721 -13.30106 -13.20138 -12.95483 -12.82568 -12.73087 -12.55406 -12.42584 -12.37406 -12.16300 -11.50838 -11.43986 -11.32094 -11.10121 -11.06135 -10.53506 -10.05218 -9.43597 -9.14690 -8.18317 -6.28694 0.83042 1.39026 1.41053 1.41244 1.54862 1.68752 2.42594 3.14723 3.28076 3.45718 3.54064 3.74055 3.89214 4.00495 4.11708 4.20106 4.26197 4.28878 4.46660 4.47397 4.55065 4.60042 4.63898 4.71965 4.72733 4.79114 4.85024 5.00446 5.05966 5.11083 5.14322 5.17560 5.28729 5.33150 5.55603 5.72460 5.80014 5.89544 6.09047 6.16799 6.31835 6.53639 6.71239 6.74975 6.88604 7.40235 8.93670 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030357 B = 0.002529 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.131077 B =11068.919797 C =11433.601456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.075 3.925 3 N -0.331 5.331 4 N -0.374 5.374 5 C 0.130 3.870 6 C 0.074 3.926 7 O -0.582 6.582 8 C 0.107 3.893 9 C -0.092 4.092 10 C -0.250 4.250 11 C 0.144 3.856 12 N -0.686 5.686 13 C 0.073 3.927 14 C -0.091 4.091 15 C 0.025 3.975 16 C -0.541 4.541 17 H 0.057 0.943 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.277 1.277 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.407 0.593 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.339 0.661 38 H 0.024 0.976 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.046 0.954 42 H -0.008 1.008 43 H -0.007 1.007 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.433 21.486 -13.292 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.091 4.091 3 N -0.153 5.153 4 N -0.158 5.158 5 C 0.008 3.992 6 C -0.005 4.005 7 O -0.390 6.390 8 C -0.021 4.021 9 C -0.151 4.151 10 C -0.261 4.261 11 C 0.014 3.986 12 N -0.317 5.317 13 C -0.056 4.056 14 C -0.130 4.130 15 C -0.013 4.013 16 C -0.579 4.579 17 H 0.076 0.924 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.789 3.211 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.133 0.867 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.258 0.742 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.156 0.844 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.010 0.990 43 H 0.011 0.989 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.162 22.495 -12.641 28.115 hybrid contribution -1.187 -1.211 -0.067 1.697 sum 9.975 21.284 -12.708 26.721 Atomic orbital electron populations 1.20271 0.85423 1.03912 1.03639 1.22641 0.97872 0.90318 0.98271 1.77251 0.87078 1.23285 1.27685 1.48340 1.05027 1.04288 1.58102 1.21483 0.84061 0.95405 0.98207 1.22244 0.88257 0.94495 0.95551 1.86332 1.46164 1.70093 1.36443 1.21311 0.97815 0.84347 0.98617 1.20590 0.91895 0.98218 1.04350 1.19719 0.91798 0.95744 1.18859 1.20056 0.99528 0.89829 0.89155 1.60565 1.54993 1.02532 1.13584 1.21829 0.97786 0.89319 0.96648 1.21361 1.00011 0.96178 0.95400 1.18977 0.94527 0.92369 0.95389 1.21736 1.44578 0.97771 0.93818 0.92443 1.25983 0.95064 0.96929 1.01996 1.70102 1.47008 1.06529 1.33714 0.85408 0.77860 0.78337 0.79493 1.18755 1.20322 1.20304 0.89964 0.90300 0.89634 0.88655 0.86700 0.92038 0.93586 0.74214 0.88556 0.89754 0.89439 0.90323 0.94257 0.84361 0.95761 0.91645 0.93100 0.93483 0.98996 0.98857 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.26 71.24 0.73 -0.68 16 2 C 0.08 1.86 7.22 43.10 0.31 2.17 16 3 N -0.33 -8.76 12.57 -47.38 -0.60 -9.36 16 4 N -0.37 -8.28 3.61 -334.69 -1.21 -9.49 16 5 C 0.13 2.09 6.61 86.38 0.57 2.66 16 6 C 0.07 0.95 7.37 71.98 0.53 1.48 16 7 O -0.58 -6.76 13.66 -148.98 -2.04 -8.80 16 8 C 0.11 2.34 6.93 41.41 0.29 2.63 16 9 C -0.09 -1.45 9.72 71.24 0.69 -0.76 16 10 C -0.25 -6.07 5.61 -20.14 -0.11 -6.18 16 11 C 0.14 3.47 5.59 85.56 0.48 3.95 16 12 N -0.69 -19.61 6.49 -517.93 -3.36 -22.97 16 13 C 0.07 2.48 5.68 86.30 0.49 2.97 16 14 C -0.09 -3.82 5.41 30.59 0.17 -3.66 16 15 C 0.03 1.33 4.97 29.85 0.15 1.48 16 16 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 18 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 19 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 20 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.46 7.25 -2.39 -0.02 1.45 16 27 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.11 1.48 7.05 -2.39 -0.02 1.46 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 31 H 0.41 1.04 9.12 -74.06 -0.68 0.36 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.05 7.08 -2.39 -0.02 1.04 16 34 H 0.09 1.60 7.77 -2.39 -0.02 1.58 16 35 H 0.08 1.81 7.77 -2.39 -0.02 1.79 16 36 H 0.04 0.91 7.25 -2.39 -0.02 0.89 16 37 H 0.34 9.59 8.72 -89.69 -0.78 8.80 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 41 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 Total: -1.00 -71.84 366.21 -0.37 -72.21 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -0.47 Total: 13.22 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 4.99 Total: -24.72 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -4.88 Total: -98.77 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -2.04 Total: -8.80 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -71.84 -0.37 -72.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318339939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.672 kcal (2) G-P(sol) polarization free energy of solvation -71.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds