Wall clock time and date at job start Tue Mar 31 2020 05:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00358 * 2 1 4 4 H 1.48502 * 109.46936 * 239.99849 * 3 2 1 5 5 H 1.48502 * 109.46966 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47390 * 119.99453 * 3 2 1 7 7 C 1.37875 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00403 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00224 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47380 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.34787 * 119.99737 * 180.02562 * 11 10 9 13 13 O 1.21587 * 119.99896 * 4.98674 * 12 11 10 14 14 N 1.34769 * 119.99878 * 184.98902 * 12 11 10 15 15 C 1.46059 * 117.66783 * 174.75050 * 14 12 11 16 16 C 1.56931 * 102.47799 * 121.41615 * 15 14 12 17 17 C 1.54045 * 106.89292 * 324.40628 * 16 15 14 18 18 N 1.41918 * 110.89490 * 94.85138 * 17 16 15 19 19 C 1.45240 * 122.31180 * 131.26407 * 18 17 16 20 20 C 1.54941 * 105.69603 * 174.68377 * 19 18 17 21 21 C 1.55234 * 105.09843 * 359.05863 * 20 19 18 22 22 C 1.46590 * 121.47400 * 276.62115 * 18 17 16 23 23 H 1.08998 * 111.11971 * 289.62688 * 22 18 17 24 24 C 1.44969 * 117.60019 * 354.78868 * 14 12 11 25 25 H 0.96999 * 119.99892 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47226 * 59.99639 * 9 7 2 27 27 H 1.09004 * 109.47065 * 299.99483 * 9 7 2 28 28 H 1.09001 * 109.46764 * 60.00135 * 10 9 7 29 29 H 1.08994 * 109.46856 * 300.00078 * 10 9 7 30 30 H 0.96994 * 120.00690 * 0.02562 * 11 10 9 31 31 H 1.08996 * 110.78383 * 3.15742 * 15 14 12 32 32 H 1.08999 * 110.91778 * 239.73812 * 15 14 12 33 33 H 1.09000 * 109.98280 * 205.03371 * 16 15 14 34 34 H 1.09002 * 109.98123 * 83.77993 * 16 15 14 35 35 H 1.08999 * 109.19654 * 215.21780 * 17 16 15 36 36 H 1.09005 * 109.19472 * 334.53585 * 17 16 15 37 37 H 1.09001 * 110.20395 * 293.73508 * 19 18 17 38 38 H 1.08997 * 110.21174 * 55.62609 * 19 18 17 39 39 H 1.08998 * 110.31676 * 240.15506 * 20 19 18 40 40 H 1.08996 * 110.40104 * 118.00595 * 20 19 18 41 41 H 1.08999 * 110.76169 * 219.82575 * 21 20 19 42 42 H 1.08999 * 110.92250 * 96.51441 * 21 20 19 43 43 H 1.09001 * 110.03934 * 168.24975 * 24 14 12 44 44 H 1.09000 * 110.12941 * 46.79113 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6622 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 2.1865 -6.0981 0.0018 13 8 3.3989 -6.1001 0.0934 14 7 1.5164 -7.2630 -0.0991 15 6 2.3016 -8.4895 -0.2115 16 6 1.8156 -9.3180 1.0296 17 6 1.5542 -8.3109 2.1656 18 7 0.1864 -7.9342 2.2032 19 6 -0.5872 -7.9411 3.4324 20 6 -1.9670 -7.3411 3.0626 21 6 -1.8646 -6.9915 1.5536 22 6 -0.3408 -6.8785 1.3335 23 1 0.0269 -5.8987 1.6379 24 6 0.0678 -7.2077 -0.0892 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8719 -3.6044 0.8906 29 1 2.8718 -3.6044 -0.8894 30 1 0.5427 -4.9308 0.0011 31 1 3.3677 -8.2742 -0.1403 32 1 2.0745 -9.0133 -1.1400 33 1 2.5877 -10.0263 1.3301 34 1 0.8966 -9.8507 0.7851 35 1 1.8268 -8.7660 3.1177 36 1 2.1655 -7.4228 2.0049 37 1 -0.7060 -8.9615 3.7967 38 1 -0.0993 -7.3254 4.1879 39 1 -2.1574 -6.4412 3.6474 40 1 -2.7568 -8.0737 3.2285 41 1 -2.3569 -6.0421 1.3426 42 1 -2.2857 -7.7880 0.9401 43 1 -0.3449 -8.1729 -0.3827 44 1 -0.2825 -6.4300 -0.7679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320073699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:17 Heat of formation + Delta-G solvation = -4.796303 kcal Electronic energy + Delta-G solvation = -23434.813239 eV Core-core repulsion = 20194.656708 eV Total energy + Delta-G solvation = -3240.156531 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94007 -38.62681 -35.93537 -34.84585 -33.66065 -32.63144 -30.72653 -29.79733 -28.96127 -25.64080 -25.28771 -24.39780 -21.89799 -21.07504 -20.86270 -20.27268 -19.36511 -17.59855 -16.83151 -16.23403 -16.04483 -15.66359 -15.22600 -14.60863 -14.52434 -14.11733 -13.85074 -13.78162 -13.14026 -13.12792 -12.92227 -12.39286 -12.29750 -12.22308 -11.95752 -11.67113 -11.32541 -11.29576 -11.15667 -11.00286 -10.82518 -10.67727 -10.63044 -10.58635 -10.29066 -9.82761 -9.51789 -9.25197 -8.62371 -8.42774 -8.13961 -7.76780 -6.07905 -4.10402 3.02965 3.32269 3.35848 3.39658 3.57726 3.72277 4.26831 4.45900 4.61756 4.67382 4.78579 4.86002 5.04004 5.14875 5.24610 5.29141 5.32699 5.37514 5.46297 5.53857 5.60711 5.70108 5.74125 5.79671 5.87285 5.89187 5.95303 6.07759 6.15859 6.27262 6.34757 6.42019 6.77845 6.81893 7.04608 7.19437 7.27365 7.57213 7.64612 7.76804 7.91150 8.26847 8.41188 8.94015 9.02388 9.54182 11.03744 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.004351 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.132913 B = 6433.804336 C = 7289.203302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.015 3.985 10 C 0.138 3.862 11 N -0.740 5.740 12 C 0.691 3.309 13 O -0.598 6.598 14 N -0.632 5.632 15 C 0.128 3.872 16 C -0.142 4.142 17 C 0.131 3.869 18 N -0.643 5.643 19 C 0.103 3.897 20 C -0.127 4.127 21 C -0.116 4.116 22 C 0.094 3.906 23 H 0.059 0.941 24 C 0.124 3.876 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.393 0.607 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -19.519 3.120 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.015 3.985 11 N -0.395 5.395 12 C 0.393 3.607 13 O -0.478 6.478 14 N -0.369 5.369 15 C 0.005 3.995 16 C -0.182 4.182 17 C 0.004 3.996 18 N -0.372 5.372 19 C -0.023 4.023 20 C -0.165 4.165 21 C -0.154 4.154 22 C -0.013 4.013 23 H 0.077 0.923 24 C -0.001 4.001 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.228 0.772 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.105 -19.643 3.052 20.298 hybrid contribution 0.109 1.374 0.309 1.413 sum -3.995 -18.269 3.361 19.001 Atomic orbital electron populations 1.69946 1.06071 1.26926 1.50413 1.24982 0.94883 0.99341 0.94997 0.86577 0.79525 0.82679 0.78783 1.20110 1.21249 1.20135 1.21012 0.93216 0.90379 1.51328 0.92318 1.19301 0.94212 0.91098 0.97669 1.21577 0.95681 0.80693 1.00517 1.45794 1.09912 1.05462 1.78322 1.16247 0.85594 0.80971 0.77934 1.90855 1.12199 1.86351 1.58352 1.46920 1.05662 1.06044 1.78265 1.22308 0.97273 0.82991 0.96946 1.23330 1.01109 0.97751 0.95981 1.20393 0.84586 0.97573 0.97058 1.52164 1.15505 1.50789 1.18752 1.21700 0.92111 0.99553 0.88944 1.22588 0.96730 1.00797 0.96371 1.22442 0.94603 1.02105 0.96282 1.22080 0.94092 0.92615 0.92538 0.92286 1.21091 0.80337 1.03068 0.95560 0.92832 0.96043 0.96119 0.92909 0.92915 0.77196 0.88058 0.91681 0.91423 0.90990 0.92746 0.93525 0.91935 0.95252 0.91311 0.91137 0.90467 0.90715 0.89112 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.37 5.09 -27.88 -0.14 0.23 16 10 C 0.14 3.07 5.62 -4.04 -0.02 3.04 16 11 N -0.74 -13.78 4.79 -65.22 -0.31 -14.09 16 12 C 0.69 12.68 6.40 -86.92 -0.56 12.12 16 13 O -0.60 -13.15 15.48 5.29 0.08 -13.07 16 14 N -0.63 -8.82 1.63 -179.29 -0.29 -9.11 16 15 C 0.13 1.54 6.83 -2.15 -0.01 1.52 16 16 C -0.14 -1.47 6.13 -24.06 -0.15 -1.62 16 17 C 0.13 1.63 5.66 -5.89 -0.03 1.60 16 18 N -0.64 -7.55 3.23 -230.25 -0.74 -8.30 16 19 C 0.10 1.08 7.00 -3.69 -0.03 1.05 16 20 C -0.13 -1.16 6.99 -24.52 -0.17 -1.33 16 21 C -0.12 -1.10 6.60 -24.83 -0.16 -1.26 16 22 C 0.09 1.12 2.74 -67.85 -0.19 0.94 16 23 H 0.06 0.87 6.51 -51.93 -0.34 0.54 16 24 C 0.12 1.41 4.79 -5.55 -0.03 1.39 16 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.39 6.53 5.31 -40.82 -0.22 6.32 16 31 H 0.10 1.41 6.78 -51.93 -0.35 1.06 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.71 8.02 -51.93 -0.42 0.30 16 35 H 0.05 0.63 7.95 -51.93 -0.41 0.22 16 36 H 0.05 0.75 5.83 -51.93 -0.30 0.45 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 43 H 0.09 0.88 8.01 -51.93 -0.42 0.47 16 44 H 0.07 0.83 6.99 -51.93 -0.36 0.47 16 LS Contribution 336.74 15.07 5.07 5.07 Total: -1.00 -31.75 336.74 -9.80 -41.56 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.43 Total: 2.51 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -1.90 Total: 4.36 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.61 Total: -56.92 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.75 -9.80 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320073699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.759 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds