Wall clock time and date at job start Tue Mar 31 2020 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00358 * 2 1 4 4 H 1.48502 * 109.46936 * 239.99849 * 3 2 1 5 5 H 1.48502 * 109.46966 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47390 * 119.99453 * 3 2 1 7 7 C 1.37875 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00403 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00224 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47380 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.34787 * 119.99737 * 180.02562 * 11 10 9 13 13 O 1.21587 * 119.99896 * 4.98674 * 12 11 10 14 14 N 1.34769 * 119.99878 * 184.98902 * 12 11 10 15 15 C 1.46059 * 117.66783 * 174.75050 * 14 12 11 16 16 C 1.56931 * 102.47799 * 121.41615 * 15 14 12 17 17 C 1.54045 * 106.89292 * 324.40628 * 16 15 14 18 18 N 1.41918 * 110.89490 * 94.85138 * 17 16 15 19 19 C 1.45240 * 122.31180 * 131.26407 * 18 17 16 20 20 C 1.54941 * 105.69603 * 174.68377 * 19 18 17 21 21 C 1.55234 * 105.09843 * 359.05863 * 20 19 18 22 22 C 1.46590 * 121.47400 * 276.62115 * 18 17 16 23 23 H 1.08998 * 111.11971 * 289.62688 * 22 18 17 24 24 C 1.44969 * 117.60019 * 354.78868 * 14 12 11 25 25 H 0.96999 * 119.99892 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47226 * 59.99639 * 9 7 2 27 27 H 1.09004 * 109.47065 * 299.99483 * 9 7 2 28 28 H 1.09001 * 109.46764 * 60.00135 * 10 9 7 29 29 H 1.08994 * 109.46856 * 300.00078 * 10 9 7 30 30 H 0.96994 * 120.00690 * 0.02562 * 11 10 9 31 31 H 1.08996 * 110.78383 * 3.15742 * 15 14 12 32 32 H 1.08999 * 110.91778 * 239.73812 * 15 14 12 33 33 H 1.09000 * 109.98280 * 205.03371 * 16 15 14 34 34 H 1.09002 * 109.98123 * 83.77993 * 16 15 14 35 35 H 1.08999 * 109.19654 * 215.21780 * 17 16 15 36 36 H 1.09005 * 109.19472 * 334.53585 * 17 16 15 37 37 H 1.09001 * 110.20395 * 293.73508 * 19 18 17 38 38 H 1.08997 * 110.21174 * 55.62609 * 19 18 17 39 39 H 1.08998 * 110.31676 * 240.15506 * 20 19 18 40 40 H 1.08996 * 110.40104 * 118.00595 * 20 19 18 41 41 H 1.08999 * 110.76169 * 219.82575 * 21 20 19 42 42 H 1.08999 * 110.92250 * 96.51441 * 21 20 19 43 43 H 1.09001 * 110.03934 * 168.24975 * 24 14 12 44 44 H 1.09000 * 110.12941 * 46.79113 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6622 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 2.1865 -6.0981 0.0018 13 8 3.3989 -6.1001 0.0934 14 7 1.5164 -7.2630 -0.0991 15 6 2.3016 -8.4895 -0.2115 16 6 1.8156 -9.3180 1.0296 17 6 1.5542 -8.3109 2.1656 18 7 0.1864 -7.9342 2.2032 19 6 -0.5872 -7.9411 3.4324 20 6 -1.9670 -7.3411 3.0626 21 6 -1.8646 -6.9915 1.5536 22 6 -0.3408 -6.8785 1.3335 23 1 0.0269 -5.8987 1.6379 24 6 0.0678 -7.2077 -0.0892 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.8719 -3.6044 0.8906 29 1 2.8718 -3.6044 -0.8894 30 1 0.5427 -4.9308 0.0011 31 1 3.3677 -8.2742 -0.1403 32 1 2.0745 -9.0133 -1.1400 33 1 2.5877 -10.0263 1.3301 34 1 0.8966 -9.8507 0.7851 35 1 1.8268 -8.7660 3.1177 36 1 2.1655 -7.4228 2.0049 37 1 -0.7060 -8.9615 3.7967 38 1 -0.0993 -7.3254 4.1879 39 1 -2.1574 -6.4412 3.6474 40 1 -2.7568 -8.0737 3.2285 41 1 -2.3569 -6.0421 1.3426 42 1 -2.2857 -7.7880 0.9401 43 1 -0.3449 -8.1729 -0.3827 44 1 -0.2825 -6.4300 -0.7679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320073699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:16 Heat of formation + Delta-G solvation = -24.487411 kcal Electronic energy + Delta-G solvation = -23435.667109 eV Core-core repulsion = 20194.656708 eV Total energy + Delta-G solvation = -3241.010401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.13278 -39.80174 -37.20810 -36.45204 -35.13769 -34.24453 -31.83724 -31.24648 -30.20903 -27.08933 -26.23954 -25.96778 -23.34233 -22.47909 -21.87950 -21.29456 -20.70700 -18.89252 -18.54308 -17.74835 -17.08519 -16.81519 -16.52138 -16.44799 -15.81152 -15.51226 -15.21548 -15.00231 -14.49417 -14.30829 -14.07360 -13.97593 -13.43854 -13.27525 -13.17270 -12.92589 -12.87198 -12.55756 -12.54830 -12.26088 -12.16939 -12.12998 -11.74640 -11.64040 -11.56545 -11.50549 -11.42215 -11.12802 -10.60981 -10.14215 -9.43390 -8.75139 -8.24807 -6.35508 1.40927 1.43489 1.51343 1.76165 2.11253 2.40087 2.79994 2.98921 3.09703 3.74845 3.81257 3.86459 4.00940 4.12058 4.26700 4.33772 4.40627 4.41344 4.47080 4.48191 4.63470 4.64601 4.67680 4.76517 4.81222 4.91214 4.93855 5.05905 5.09193 5.10624 5.24948 5.27292 5.38437 5.40786 5.48220 5.55254 5.69049 5.77712 5.92830 6.15297 6.33173 6.76352 6.80914 6.97262 7.33671 7.55295 8.86978 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.004351 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.132913 B = 6433.804336 C = 7289.203302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.028 3.972 10 C 0.160 3.840 11 N -0.736 5.736 12 C 0.688 3.312 13 O -0.640 6.640 14 N -0.619 5.619 15 C 0.122 3.878 16 C -0.125 4.125 17 C 0.129 3.871 18 N -0.639 5.639 19 C 0.098 3.902 20 C -0.123 4.123 21 C -0.109 4.109 22 C 0.090 3.910 23 H 0.021 0.979 24 C 0.122 3.878 25 H 0.266 0.734 26 H 0.010 0.990 27 H 0.004 0.996 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.403 0.597 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.003 0.997 37 H 0.080 0.920 38 H 0.010 0.990 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.122 0.878 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.921 -21.013 2.767 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.035 3.965 11 N -0.392 5.392 12 C 0.390 3.610 13 O -0.522 6.522 14 N -0.355 5.355 15 C 0.000 4.000 16 C -0.164 4.164 17 C 0.002 3.998 18 N -0.367 5.367 19 C -0.028 4.028 20 C -0.161 4.161 21 C -0.147 4.147 22 C -0.018 4.018 23 H 0.039 0.961 24 C -0.001 4.001 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.240 0.760 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.021 0.979 37 H 0.099 0.901 38 H 0.028 0.972 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.140 0.860 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.245 -21.187 2.700 21.993 hybrid contribution 0.437 1.788 0.468 1.899 sum -4.808 -19.399 3.167 20.235 Atomic orbital electron populations 1.70049 1.07489 1.28095 1.50758 1.25846 0.95804 1.02980 0.94260 0.85503 0.78341 0.78140 0.79095 1.19290 1.20353 1.19515 1.21404 0.93515 0.91884 1.51922 0.92466 1.19080 0.94080 0.91622 0.96131 1.21055 0.94698 0.81497 0.99221 1.45511 1.10236 1.04709 1.78767 1.16411 0.85151 0.81816 0.77654 1.90819 1.14139 1.87055 1.60204 1.47035 1.06806 1.05004 1.76609 1.22513 0.95878 0.82344 0.99278 1.23206 1.02356 0.96952 0.93911 1.20413 0.84464 0.96475 0.98456 1.52414 1.14962 1.50160 1.19190 1.21826 0.92519 1.00325 0.88104 1.22591 0.96491 1.01070 0.95937 1.22442 0.92439 1.02960 0.96878 1.22065 0.95934 0.90953 0.92803 0.96096 1.21320 0.78496 1.04891 0.95395 0.92472 0.97214 0.97751 0.94563 0.93812 0.75998 0.90491 0.88722 0.89633 0.89226 0.92109 0.97898 0.90142 0.97169 0.92043 0.88826 0.90523 0.88487 0.85991 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 13.29 21.45 0.28 -54.20 16 2 C 0.01 0.58 5.46 84.65 0.46 1.04 16 3 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -31.40 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.48 5.09 29.85 0.15 1.64 16 10 C 0.16 7.40 5.62 86.38 0.49 7.88 16 11 N -0.74 -28.44 4.79 -478.53 -2.29 -30.73 16 12 C 0.69 25.94 6.40 179.05 1.15 27.08 16 13 O -0.64 -29.26 15.48 -3.99 -0.06 -29.33 16 14 N -0.62 -16.87 1.63 -839.41 -1.37 -18.23 16 15 C 0.12 2.75 6.83 87.84 0.60 3.35 16 16 C -0.12 -2.27 6.13 32.33 0.20 -2.07 16 17 C 0.13 3.13 5.66 87.57 0.50 3.63 16 18 N -0.64 -14.16 3.23 -882.38 -2.85 -17.01 16 19 C 0.10 1.92 7.00 87.28 0.61 2.53 16 20 C -0.12 -2.01 6.99 32.02 0.22 -1.78 16 21 C -0.11 -1.84 6.60 31.83 0.21 -1.63 16 22 C 0.09 2.07 2.74 44.99 0.12 2.19 16 23 H 0.02 0.65 6.51 -2.39 -0.02 0.63 16 24 C 0.12 2.57 4.79 86.22 0.41 2.98 16 25 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.40 13.82 5.31 -92.71 -0.49 13.33 16 31 H 0.08 2.16 6.78 -2.39 -0.02 2.14 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.39 8.02 -2.39 -0.02 1.37 16 35 H 0.06 1.37 7.95 -2.39 -0.02 1.35 16 36 H 0.00 0.09 5.83 -2.38 -0.01 0.08 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.10 1.25 8.05 -2.39 -0.02 1.23 16 43 H 0.12 1.88 8.01 -2.39 -0.02 1.86 16 44 H 0.08 1.62 6.99 -2.39 -0.02 1.60 16 Total: -1.00 -70.18 336.74 1.58 -68.60 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.48 Total: 19.13 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 5.35 Total: 15.67 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -6.23 Total: -120.18 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.06 Total: -29.33 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -70.18 1.58 -68.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320073699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.114 kcal (2) G-P(sol) polarization free energy of solvation -70.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds