Wall clock time and date at job start Tue Mar 31 2020 05:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00463 * 2 1 4 4 H 1.48503 * 109.47564 * 240.00239 * 3 2 1 5 5 H 1.48505 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47441 * 119.99929 * 3 2 1 7 7 C 1.37879 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00157 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99780 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47209 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47244 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99970 * 179.97438 * 11 10 9 13 13 O 1.21586 * 119.99744 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99753 * 179.97438 * 12 11 10 15 15 C 1.43528 * 117.80414 * 0.02562 * 14 12 11 16 16 C 1.56125 * 110.72268 * 285.15550 * 15 14 12 17 17 C 1.57160 * 99.25563 * 309.01206 * 16 15 14 18 18 N 1.48757 * 108.23198 * 326.59719 * 17 16 15 19 19 C 1.47984 * 109.53993 * 225.58908 * 18 17 16 20 20 C 1.54188 * 105.22257 * 214.94851 * 19 18 17 21 21 C 1.54068 * 105.14468 * 24.37963 * 20 19 18 22 22 C 1.52330 * 99.86716 * 117.19944 * 18 17 16 23 23 H 1.09004 * 114.23467 * 27.84575 * 22 18 17 24 24 C 1.45119 * 117.79582 * 179.97438 * 14 12 11 25 25 H 0.96999 * 119.99671 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46799 * 60.00310 * 9 7 2 27 27 H 1.08998 * 109.47166 * 300.00379 * 9 7 2 28 28 H 1.08995 * 109.47242 * 59.99957 * 10 9 7 29 29 H 1.09005 * 109.46819 * 299.99879 * 10 9 7 30 30 H 0.96993 * 120.00379 * 0.02562 * 11 10 9 31 31 H 1.08992 * 109.22497 * 164.83154 * 15 14 12 32 32 H 1.09002 * 109.22443 * 45.46883 * 15 14 12 33 33 H 1.09002 * 111.45836 * 66.54472 * 16 15 14 34 34 H 1.09005 * 111.45495 * 191.48449 * 16 15 14 35 35 H 1.08996 * 109.70932 * 86.21277 * 17 16 15 36 36 H 1.09000 * 109.70698 * 206.83494 * 17 16 15 37 37 H 1.08999 * 110.29917 * 96.01288 * 19 18 17 38 38 H 1.09000 * 110.37396 * 333.92020 * 19 18 17 39 39 H 1.08998 * 110.30810 * 265.46485 * 20 19 18 40 40 H 1.09002 * 110.30810 * 143.29529 * 20 19 18 41 41 H 1.09000 * 110.19732 * 240.75856 * 21 20 19 42 42 H 1.08998 * 110.26483 * 118.93047 * 21 20 19 43 43 H 1.09000 * 110.32087 * 232.12472 * 24 14 12 44 44 H 1.09000 * 110.32261 * 354.36548 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5125 -4.9308 -0.0012 12 6 2.1863 -6.0981 -0.0018 13 8 3.4022 -6.0981 -0.0023 14 7 1.5124 -7.2652 -0.0018 15 6 0.0781 -7.2101 -0.0018 16 6 -0.4592 -6.8075 1.4077 17 6 0.3252 -7.8497 2.2844 18 7 0.4796 -9.1003 1.4939 19 6 0.1489 -10.2665 2.3429 20 6 1.1043 -11.3859 1.8831 21 6 2.3103 -10.6558 1.2616 22 6 1.9980 -9.1547 1.3851 23 1 2.5232 -8.6722 2.2095 24 6 2.2856 -8.4932 -0.0031 25 1 -0.4849 0.8401 -0.0004 26 1 0.6239 -2.5566 -0.8904 27 1 0.6245 -2.5570 0.8896 28 1 2.8717 -3.6045 0.8894 29 1 2.8717 -3.6044 -0.8906 30 1 0.5425 -4.9308 -0.0019 31 1 -0.3187 -8.1889 -0.2711 32 1 -0.2528 -6.4750 -0.7354 33 1 -0.1831 -5.7843 1.6624 34 1 -1.5366 -6.9557 1.4810 35 1 1.3081 -7.4519 2.5369 36 1 -0.2336 -8.0568 3.1971 37 1 -0.8874 -10.5661 2.1868 38 1 0.3198 -10.0316 3.3935 39 1 0.6183 -12.0156 1.1379 40 1 1.4233 -11.9851 2.7359 41 1 2.4182 -10.9327 0.2129 42 1 3.2210 -10.8971 1.8096 43 1 1.9556 -9.1475 -0.8100 44 1 3.3480 -8.2715 -0.1042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320073700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:19 Heat of formation + Delta-G solvation = 7.110899 kcal Electronic energy + Delta-G solvation = -23120.464696 eV Core-core repulsion = 19880.824501 eV Total energy + Delta-G solvation = -3239.640196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82197 -38.84681 -35.74088 -34.95130 -33.23172 -32.76853 -30.74562 -29.50694 -29.05086 -25.34546 -25.30475 -24.07326 -22.08045 -20.93429 -20.78641 -20.68053 -19.34587 -17.52748 -16.53465 -16.21085 -16.05322 -15.40768 -15.01036 -14.63446 -14.45015 -14.24976 -13.98593 -13.81009 -13.50205 -13.29394 -12.85728 -12.42457 -12.24744 -11.90678 -11.74429 -11.61457 -11.52873 -11.14512 -11.04842 -10.98534 -10.87355 -10.82192 -10.61572 -10.47499 -10.25965 -9.79062 -9.49424 -9.23422 -8.97551 -8.55696 -8.39706 -8.06159 -6.06035 -4.08475 3.14661 3.33449 3.37031 3.40918 3.61745 3.92346 4.29493 4.32813 4.44449 4.55718 4.65705 4.86896 4.95837 5.02582 5.07951 5.25889 5.28190 5.30924 5.37696 5.43115 5.54904 5.58956 5.65177 5.72112 5.77960 5.80792 5.83040 5.91220 5.94997 6.20653 6.36142 6.45419 6.47995 6.64857 6.82326 6.95949 7.09990 7.33678 7.60986 7.67743 7.93399 8.30088 8.48429 8.96489 9.08466 9.55967 11.05630 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038150 B = 0.003429 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.760275 B = 8164.794620 C = 8568.284769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.138 3.862 11 N -0.737 5.737 12 C 0.689 3.311 13 O -0.603 6.603 14 N -0.618 5.618 15 C 0.123 3.877 16 C -0.142 4.142 17 C 0.011 3.989 18 N -0.453 5.453 19 C 0.012 3.988 20 C -0.123 4.123 21 C -0.125 4.125 22 C 0.010 3.990 23 H 0.086 0.914 24 C 0.148 3.852 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.394 0.606 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.081 -22.650 3.702 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.015 3.985 11 N -0.392 5.392 12 C 0.390 3.610 13 O -0.482 6.482 14 N -0.353 5.353 15 C -0.002 4.002 16 C -0.181 4.181 17 C -0.117 4.117 18 N -0.177 5.177 19 C -0.117 4.117 20 C -0.161 4.161 21 C -0.164 4.164 22 C -0.100 4.100 23 H 0.104 0.896 24 C 0.024 3.976 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.230 0.770 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.750 -22.535 3.087 22.813 hybrid contribution 0.242 0.931 0.961 1.359 sum -1.508 -21.605 4.047 22.032 Atomic orbital electron populations 1.69946 1.06070 1.26910 1.50434 1.24988 0.94887 0.99349 0.95047 0.86579 0.79514 0.82696 0.78769 1.20118 1.21280 1.20141 1.21023 0.93221 0.90407 1.51271 0.92309 1.19305 0.94235 0.91089 0.97711 1.21567 0.95659 0.80739 1.00500 1.45748 1.10040 1.05338 1.78102 1.16326 0.85588 0.81138 0.77954 1.90845 1.11910 1.86520 1.58944 1.46043 1.06067 1.04806 1.78371 1.21298 0.80084 1.03119 0.95675 1.23522 0.99595 0.98342 0.96689 1.23968 1.00652 0.91845 0.95278 1.70256 1.10921 1.01236 1.35245 1.23278 1.00274 0.92197 0.95903 1.22286 0.95747 0.97604 1.00487 1.22302 0.98092 0.94137 1.01866 1.25247 0.89573 0.95691 0.99441 0.89613 1.21974 0.97331 0.83938 0.94407 0.92838 0.96036 0.96069 0.92939 0.92923 0.77014 0.88064 0.92891 0.90406 0.90061 0.91614 0.92759 0.90079 0.93536 0.91132 0.91551 0.90721 0.91465 0.90918 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.36 5.09 -27.88 -0.14 0.21 16 10 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 11 N -0.74 -13.73 4.98 -65.22 -0.32 -14.05 16 12 C 0.69 12.61 7.99 -86.91 -0.69 11.92 16 13 O -0.60 -13.19 15.47 5.29 0.08 -13.10 16 14 N -0.62 -8.66 1.95 -178.58 -0.35 -9.00 16 15 C 0.12 1.46 4.83 -3.94 -0.02 1.44 16 16 C -0.14 -1.59 6.91 -22.80 -0.16 -1.75 16 17 C 0.01 0.12 5.21 -0.54 0.00 0.12 16 18 N -0.45 -4.47 3.69 -213.45 -0.79 -5.26 16 19 C 0.01 0.10 6.37 -2.61 -0.02 0.08 16 20 C -0.12 -0.88 6.98 -25.55 -0.18 -1.05 16 21 C -0.13 -1.00 6.48 -25.75 -0.17 -1.17 16 22 C 0.01 0.10 3.00 -62.33 -0.19 -0.09 16 23 H 0.09 0.99 6.89 -51.93 -0.36 0.64 16 24 C 0.15 1.79 5.89 -2.93 -0.02 1.77 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.39 6.59 5.27 -40.82 -0.22 6.38 16 31 H 0.10 1.11 6.86 -51.93 -0.36 0.75 16 32 H 0.05 0.64 7.01 -51.93 -0.36 0.28 16 33 H 0.08 1.01 6.87 -51.93 -0.36 0.65 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.85 6.20 -51.93 -0.32 0.53 16 36 H 0.05 0.54 7.29 -51.93 -0.38 0.16 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.38 7.43 -51.93 -0.39 0.00 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.57 7.31 -51.93 -0.38 0.19 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.78 7.61 -51.93 -0.40 0.38 16 44 H 0.10 1.36 6.74 -51.93 -0.35 1.01 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -31.40 333.98 -9.85 -41.26 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.21 Total: 2.97 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.02 Total: 1.17 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.72 Total: -53.88 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.40 -9.85 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320073700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.369 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds