Wall clock time and date at job start Tue Mar 31 2020 05:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00463 * 2 1 4 4 H 1.48503 * 109.47564 * 240.00239 * 3 2 1 5 5 H 1.48505 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47441 * 119.99929 * 3 2 1 7 7 C 1.37879 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00157 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99780 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47209 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47244 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99970 * 179.97438 * 11 10 9 13 13 O 1.21586 * 119.99744 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99753 * 179.97438 * 12 11 10 15 15 C 1.43528 * 117.80414 * 0.02562 * 14 12 11 16 16 C 1.56125 * 110.72268 * 285.15550 * 15 14 12 17 17 C 1.57160 * 99.25563 * 309.01206 * 16 15 14 18 18 N 1.48757 * 108.23198 * 326.59719 * 17 16 15 19 19 C 1.47984 * 109.53993 * 225.58908 * 18 17 16 20 20 C 1.54188 * 105.22257 * 214.94851 * 19 18 17 21 21 C 1.54068 * 105.14468 * 24.37963 * 20 19 18 22 22 C 1.52330 * 99.86716 * 117.19944 * 18 17 16 23 23 H 1.09004 * 114.23467 * 27.84575 * 22 18 17 24 24 C 1.45119 * 117.79582 * 179.97438 * 14 12 11 25 25 H 0.96999 * 119.99671 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46799 * 60.00310 * 9 7 2 27 27 H 1.08998 * 109.47166 * 300.00379 * 9 7 2 28 28 H 1.08995 * 109.47242 * 59.99957 * 10 9 7 29 29 H 1.09005 * 109.46819 * 299.99879 * 10 9 7 30 30 H 0.96993 * 120.00379 * 0.02562 * 11 10 9 31 31 H 1.08992 * 109.22497 * 164.83154 * 15 14 12 32 32 H 1.09002 * 109.22443 * 45.46883 * 15 14 12 33 33 H 1.09002 * 111.45836 * 66.54472 * 16 15 14 34 34 H 1.09005 * 111.45495 * 191.48449 * 16 15 14 35 35 H 1.08996 * 109.70932 * 86.21277 * 17 16 15 36 36 H 1.09000 * 109.70698 * 206.83494 * 17 16 15 37 37 H 1.08999 * 110.29917 * 96.01288 * 19 18 17 38 38 H 1.09000 * 110.37396 * 333.92020 * 19 18 17 39 39 H 1.08998 * 110.30810 * 265.46485 * 20 19 18 40 40 H 1.09002 * 110.30810 * 143.29529 * 20 19 18 41 41 H 1.09000 * 110.19732 * 240.75856 * 21 20 19 42 42 H 1.08998 * 110.26483 * 118.93047 * 21 20 19 43 43 H 1.09000 * 110.32087 * 232.12472 * 24 14 12 44 44 H 1.09000 * 110.32261 * 354.36548 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5125 -4.9308 -0.0012 12 6 2.1863 -6.0981 -0.0018 13 8 3.4022 -6.0981 -0.0023 14 7 1.5124 -7.2652 -0.0018 15 6 0.0781 -7.2101 -0.0018 16 6 -0.4592 -6.8075 1.4077 17 6 0.3252 -7.8497 2.2844 18 7 0.4796 -9.1003 1.4939 19 6 0.1489 -10.2665 2.3429 20 6 1.1043 -11.3859 1.8831 21 6 2.3103 -10.6558 1.2616 22 6 1.9980 -9.1547 1.3851 23 1 2.5232 -8.6722 2.2095 24 6 2.2856 -8.4932 -0.0031 25 1 -0.4849 0.8401 -0.0004 26 1 0.6239 -2.5566 -0.8904 27 1 0.6245 -2.5570 0.8896 28 1 2.8717 -3.6045 0.8894 29 1 2.8717 -3.6044 -0.8906 30 1 0.5425 -4.9308 -0.0019 31 1 -0.3187 -8.1889 -0.2711 32 1 -0.2528 -6.4750 -0.7354 33 1 -0.1831 -5.7843 1.6624 34 1 -1.5366 -6.9557 1.4810 35 1 1.3081 -7.4519 2.5369 36 1 -0.2336 -8.0568 3.1971 37 1 -0.8874 -10.5661 2.1868 38 1 0.3198 -10.0316 3.3935 39 1 0.6183 -12.0156 1.1379 40 1 1.4233 -11.9851 2.7359 41 1 2.4182 -10.9327 0.2129 42 1 3.2210 -10.8971 1.8096 43 1 1.9556 -9.1475 -0.8100 44 1 3.3480 -8.2715 -0.1042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320073700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:19 Heat of formation + Delta-G solvation = -12.293177 kcal Electronic energy + Delta-G solvation = -23121.306120 eV Core-core repulsion = 19880.824501 eV Total energy + Delta-G solvation = -3240.481620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97752 -39.96113 -36.89433 -36.68333 -34.84079 -34.13246 -31.98939 -30.81174 -30.16299 -26.98665 -26.25431 -25.44740 -23.32499 -22.48851 -21.62955 -21.53592 -20.76528 -18.79295 -18.47324 -17.47104 -17.10726 -16.56383 -16.44773 -16.21895 -15.61165 -15.31927 -15.20097 -15.01885 -14.73761 -14.61152 -14.25989 -13.77217 -13.51917 -13.21991 -12.91755 -12.79406 -12.62873 -12.53292 -12.41719 -12.23269 -12.20508 -11.87321 -11.78764 -11.62520 -11.61969 -11.46655 -11.24048 -11.06546 -10.59229 -10.08426 -9.80266 -9.35749 -8.23105 -6.33600 1.42075 1.44697 1.52526 1.83911 2.14488 2.41780 3.09329 3.11412 3.13111 3.55369 3.71986 3.83656 4.06494 4.10123 4.16412 4.31379 4.32728 4.42611 4.51188 4.52846 4.63511 4.67757 4.71561 4.73455 4.83338 4.86024 4.91521 4.99102 5.01374 5.10490 5.15915 5.22085 5.31319 5.34186 5.52378 5.59140 5.63543 5.75652 5.82465 5.92496 6.06227 6.17885 6.78916 7.05105 7.35493 7.60607 8.88698 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038150 B = 0.003429 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.760275 B = 8164.794620 C = 8568.284769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.686 3.314 13 O -0.641 6.641 14 N -0.604 5.604 15 C 0.121 3.879 16 C -0.138 4.138 17 C 0.015 3.985 18 N -0.452 5.452 19 C 0.010 3.990 20 C -0.117 4.117 21 C -0.121 4.121 22 C 0.014 3.986 23 H 0.068 0.932 24 C 0.143 3.857 25 H 0.266 0.734 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.404 0.596 31 H 0.120 0.880 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 -23.978 3.827 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.011 4.011 10 C 0.035 3.965 11 N -0.389 5.389 12 C 0.387 3.613 13 O -0.524 6.524 14 N -0.338 5.338 15 C -0.003 4.003 16 C -0.178 4.178 17 C -0.114 4.114 18 N -0.175 5.175 19 C -0.118 4.118 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.096 4.096 23 H 0.086 0.914 24 C 0.020 3.980 25 H 0.075 0.925 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.242 0.758 31 H 0.138 0.862 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.113 0.887 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.383 -23.915 3.215 24.248 hybrid contribution 0.385 1.269 0.931 1.620 sum -1.997 -22.647 4.146 23.110 Atomic orbital electron populations 1.70051 1.07517 1.28063 1.50875 1.25864 0.95809 1.03041 0.94359 0.85499 0.78315 0.78114 0.79120 1.19363 1.20489 1.19359 1.21428 0.93569 0.91896 1.51731 0.92354 1.19095 0.94142 0.91645 0.96191 1.21060 0.94659 0.81408 0.99369 1.45470 1.10356 1.04569 1.78506 1.16483 0.85164 0.81920 0.77736 1.90815 1.13716 1.87169 1.60720 1.46140 1.06986 1.03888 1.76813 1.21477 0.78521 1.04113 0.96188 1.23491 1.00905 0.97277 0.96088 1.23877 0.99353 0.92246 0.95907 1.70201 1.10320 1.01392 1.35610 1.23358 1.01190 0.91651 0.95622 1.22278 0.94875 0.97244 1.01123 1.22289 0.98928 0.92149 1.02644 1.25093 0.89928 0.97099 0.97460 0.91365 1.22162 0.96041 0.83320 0.96491 0.92512 0.97481 0.97414 0.94041 0.94051 0.75835 0.86237 0.93068 0.92517 0.87850 0.94126 0.91588 0.89009 0.93560 0.90183 0.90362 0.89976 0.90862 0.88739 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 13.29 21.45 0.28 -54.45 16 2 C 0.01 0.46 5.46 84.66 0.46 0.92 16 3 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.55 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.39 5.09 29.85 0.15 1.55 16 10 C 0.16 7.29 5.61 86.38 0.48 7.77 16 11 N -0.73 -27.96 4.98 -478.53 -2.38 -30.34 16 12 C 0.69 25.61 7.99 179.05 1.43 27.04 16 13 O -0.64 -28.93 15.47 -3.99 -0.06 -28.99 16 14 N -0.60 -16.75 1.95 -837.17 -1.63 -18.39 16 15 C 0.12 2.71 4.83 88.01 0.43 3.14 16 16 C -0.14 -2.95 6.91 33.14 0.23 -2.72 16 17 C 0.02 0.32 5.21 87.41 0.45 0.77 16 18 N -0.45 -8.02 3.69 -829.24 -3.06 -11.08 16 19 C 0.01 0.14 6.37 86.50 0.55 0.69 16 20 C -0.12 -1.31 6.98 31.36 0.22 -1.09 16 21 C -0.12 -1.67 6.48 31.23 0.20 -1.47 16 22 C 0.01 0.27 3.00 45.31 0.14 0.40 16 23 H 0.07 1.60 6.89 -2.39 -0.02 1.58 16 24 C 0.14 3.38 5.89 87.84 0.52 3.89 16 25 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 26 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.40 13.75 5.27 -92.71 -0.49 13.26 16 31 H 0.12 2.31 6.86 -2.39 -0.02 2.30 16 32 H 0.05 1.19 7.01 -2.39 -0.02 1.17 16 33 H 0.06 1.47 6.87 -2.39 -0.02 1.45 16 34 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.04 1.06 6.20 -2.39 -0.01 1.04 16 36 H 0.07 1.21 7.29 -2.39 -0.02 1.20 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.05 0.65 7.43 -2.39 -0.02 0.63 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 1.03 7.31 -2.39 -0.02 1.01 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 1.83 7.61 -2.39 -0.02 1.82 16 44 H 0.08 2.18 6.74 -2.39 -0.02 2.16 16 Total: -1.00 -67.69 333.98 1.17 -66.53 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.50 Total: 20.71 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 5.50 Total: 9.89 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -6.79 Total: -114.25 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.06 Total: -28.99 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -67.69 1.17 -66.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320073700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.232 kcal (2) G-P(sol) polarization free energy of solvation -67.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds