Wall clock time and date at job start Tue Mar 31 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47192 * 54.99608 * 11 10 9 13 13 N 1.46905 * 109.46980 * 294.99461 * 11 10 9 14 14 C 1.50695 * 109.47139 * 175.00058 * 11 10 9 15 15 O 1.21276 * 120.00599 * 99.99809 * 14 11 10 16 16 N 1.34785 * 119.99764 * 279.99894 * 14 11 10 17 17 C 1.46594 * 119.68485 * 359.97438 * 16 14 11 18 18 C 1.53957 * 110.58736 * 132.16828 * 17 16 14 19 19 C 1.51532 * 107.34203 * 51.05841 * 18 17 16 20 20 H 1.08994 * 109.31507 * 53.76467 * 19 18 17 21 21 N 1.45907 * 117.26711 * 178.22861 * 19 18 17 22 22 C 1.48568 * 107.07753 * 149.17694 * 21 19 18 23 23 C 1.55286 * 107.00425 * 355.18161 * 22 21 19 24 24 C 1.53726 * 101.91165 * 337.42102 * 23 22 21 25 25 H 1.08995 * 111.26988 * 281.21096 * 24 23 22 26 26 C 1.47719 * 119.68487 * 179.72631 * 16 14 11 27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 29 29 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 30 30 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 31 31 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 32 32 H 1.00896 * 111.00242 * 300.00523 * 13 11 10 33 33 H 1.00908 * 110.99414 * 63.95951 * 13 11 10 34 34 H 1.09002 * 109.25816 * 252.45111 * 17 16 14 35 35 H 1.08997 * 109.25133 * 11.92247 * 17 16 14 36 36 H 1.08992 * 109.88232 * 170.51993 * 18 17 16 37 37 H 1.09007 * 109.87557 * 291.52858 * 18 17 16 38 38 H 1.00901 * 110.99735 * 270.47190 * 21 19 18 39 39 H 1.09001 * 109.92443 * 235.84597 * 22 21 19 40 40 H 1.08992 * 110.09981 * 114.61330 * 22 21 19 41 41 H 1.08996 * 110.94349 * 219.26650 * 23 22 21 42 42 H 1.09001 * 110.97308 * 95.58606 * 23 22 21 43 43 H 1.08996 * 110.07428 * 351.26999 * 26 16 14 44 44 H 1.09004 * 110.07059 * 112.85116 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 1 0.7880 -5.0073 -0.8403 13 7 0.7292 -5.1182 1.2568 14 6 2.4550 -6.1298 -0.1226 15 8 2.7873 -6.7531 0.8632 16 7 2.9575 -6.4592 -1.3292 17 6 2.5508 -5.7016 -2.5164 18 6 3.7810 -5.3024 -3.3516 19 6 4.5997 -6.5572 -3.5781 20 1 3.9640 -7.3291 -4.0117 21 7 5.8068 -6.4307 -4.3878 22 6 6.7759 -7.4393 -3.8870 23 6 6.1332 -8.1069 -2.6408 24 6 5.1204 -7.0394 -2.1960 25 1 5.6100 -6.2328 -1.6505 26 6 3.9170 -7.5767 -1.4417 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6242 -2.5567 0.8904 29 1 0.6248 -2.5571 -0.8896 30 1 2.8720 -3.6043 -0.8895 31 1 2.8721 -3.6042 0.8905 32 1 1.3493 -5.1022 2.0526 33 1 0.0244 -4.4001 1.3331 34 1 1.8873 -6.3159 -3.1251 35 1 2.0214 -4.8013 -2.2043 36 1 3.4615 -4.8904 -4.3087 37 1 4.3732 -4.5648 -2.8098 38 1 5.6038 -6.5785 -5.3651 39 1 7.7091 -6.9508 -3.6069 40 1 6.9654 -8.1900 -4.6542 41 1 6.8787 -8.2836 -1.8656 42 1 5.6283 -9.0341 -2.9117 43 1 4.2183 -7.9125 -0.4495 44 1 3.4682 -8.4007 -1.9965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326288625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:30 Heat of formation + Delta-G solvation = -43.944632 kcal Electronic energy + Delta-G solvation = -23112.064443 eV Core-core repulsion = 19870.210314 eV Total energy + Delta-G solvation = -3241.854130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71655 -39.01876 -35.79175 -35.70861 -33.13606 -32.29649 -31.05594 -29.76854 -28.72300 -26.52177 -24.61018 -23.19102 -23.05160 -21.26212 -20.87862 -20.40942 -18.71935 -17.55693 -16.71339 -16.52700 -15.91438 -15.61317 -15.11448 -14.75898 -14.34526 -14.08703 -13.79429 -13.71829 -13.59013 -13.31500 -12.98272 -12.85180 -12.69753 -12.30222 -12.04021 -11.69550 -11.54910 -11.50562 -11.34062 -11.21844 -10.97276 -10.84247 -10.37908 -10.28147 -10.13276 -10.08298 -9.35765 -8.72600 -8.71453 -8.66900 -8.40287 -8.25485 -6.42743 -4.13223 2.82703 2.95723 3.41327 3.42457 3.61347 3.76996 4.27326 4.41706 4.49367 4.57165 4.68426 4.86628 4.93552 5.02861 5.09745 5.11509 5.21630 5.30910 5.33616 5.39033 5.45088 5.51143 5.57876 5.59952 5.65716 5.68547 5.75374 5.85486 6.02097 6.12715 6.19951 6.37150 6.52375 6.57314 6.70729 7.08849 7.21078 7.29568 7.33470 7.53159 7.79404 8.11475 8.35831 8.38182 8.80843 9.58626 10.97592 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.004469 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.542904 B = 6264.135506 C = 7317.276213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.048 0.952 9 C 0.012 3.988 10 C -0.132 4.132 11 C 0.072 3.928 12 H 0.096 0.904 13 N -0.830 5.830 14 C 0.527 3.473 15 O -0.538 6.538 16 N -0.615 5.615 17 C 0.104 3.896 18 C -0.117 4.117 19 C 0.075 3.925 20 H 0.042 0.958 21 N -0.675 5.675 22 C 0.048 3.952 23 C -0.133 4.133 24 C -0.112 4.112 25 H 0.093 0.907 26 C 0.126 3.874 27 H 0.268 0.732 28 H 0.008 0.992 29 H 0.009 0.991 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.346 0.654 33 H 0.352 0.648 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.339 0.661 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.061 -15.876 -9.176 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.895 3.105 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.066 0.934 9 C -0.025 4.025 10 C -0.172 4.172 11 C -0.043 4.043 12 H 0.114 0.886 13 N -0.362 5.362 14 C 0.316 3.684 15 O -0.414 6.414 16 N -0.350 5.350 17 C -0.020 4.020 18 C -0.156 4.156 19 C -0.036 4.036 20 H 0.060 0.940 21 N -0.304 5.304 22 C -0.081 4.081 23 C -0.172 4.172 24 C -0.131 4.131 25 H 0.111 0.889 26 C 0.003 3.997 27 H 0.079 0.921 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.074 -14.718 -8.582 19.303 hybrid contribution 0.282 -1.527 -0.344 1.591 sum 9.356 -16.246 -8.926 20.764 Atomic orbital electron populations 1.70803 1.06853 1.30559 1.46395 1.25837 0.96511 1.02727 0.93622 0.83560 0.74934 0.75367 0.76590 1.20703 1.21385 1.21445 1.21987 0.94272 0.91832 1.56069 0.93363 1.19222 0.94319 0.92912 0.96040 1.22297 0.99646 0.93340 1.01882 1.21545 0.94799 0.92565 0.95408 0.88619 1.58757 1.18464 1.55695 1.03267 1.20882 0.81070 0.84289 0.82169 1.90616 1.60430 1.53616 1.36732 1.48195 1.45613 1.33622 1.07587 1.21881 0.96563 0.97038 0.86509 1.21671 0.95972 0.97356 1.00553 1.21903 0.91383 0.97094 0.93172 0.93995 1.61526 1.11265 1.50899 1.06711 1.22949 0.96556 0.92754 0.95839 1.22610 0.98659 0.97816 0.98108 1.22451 0.95476 0.98999 0.96218 0.88911 1.21363 0.87895 0.88468 1.01945 0.92136 0.97339 0.97288 0.92089 0.92513 0.84044 0.83340 0.91771 0.88222 0.90217 0.90183 0.84512 0.90499 0.93037 0.90374 0.91180 0.88693 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.15 13.65 55.43 0.76 -26.39 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 3 Si 1.07 24.96 29.90 -169.99 -5.08 19.87 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.60 -16.70 9.11 -34.44 -0.31 -17.01 16 8 H 0.05 1.33 7.74 -52.48 -0.41 0.93 16 9 C 0.01 0.29 4.05 -27.88 -0.11 0.18 16 10 C -0.13 -2.62 4.41 -26.73 -0.12 -2.74 16 11 C 0.07 1.24 2.34 -68.87 -0.16 1.08 16 12 H 0.10 1.56 6.85 -51.93 -0.36 1.20 16 13 N -0.83 -14.48 8.94 -5.66 -0.05 -14.53 16 14 C 0.53 9.05 6.92 -10.98 -0.08 8.97 16 15 O -0.54 -10.72 15.61 5.56 0.09 -10.63 16 16 N -0.62 -8.51 3.01 -172.73 -0.52 -9.03 16 17 C 0.10 1.24 5.69 -3.49 -0.02 1.22 16 18 C -0.12 -1.31 6.06 -26.97 -0.16 -1.47 16 19 C 0.07 0.75 2.62 -67.74 -0.18 0.57 16 20 H 0.04 0.40 7.95 -51.93 -0.41 -0.02 16 21 N -0.68 -6.38 7.34 -104.30 -0.77 -7.14 16 22 C 0.05 0.39 7.62 -1.69 -0.01 0.37 16 23 C -0.13 -1.10 6.53 -25.14 -0.16 -1.26 16 24 C -0.11 -1.19 2.83 -89.58 -0.25 -1.44 16 25 H 0.09 1.19 8.12 -51.93 -0.42 0.77 16 26 C 0.13 1.50 5.94 -3.96 -0.02 1.47 16 27 H 0.27 7.89 7.22 -40.82 -0.29 7.60 16 28 H 0.01 0.21 6.73 -51.93 -0.35 -0.14 16 29 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 30 H 0.06 1.18 6.82 -51.93 -0.35 0.82 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.35 6.16 8.58 -39.29 -0.34 5.82 16 33 H 0.35 6.03 7.55 -39.29 -0.30 5.74 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.33 4.58 -51.93 -0.24 1.09 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 38 H 0.34 2.63 8.90 -39.29 -0.35 2.28 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 43 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 44 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -31.82 338.59 -9.36 -41.18 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.19 Total: 11.24 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -1.69 Total: -9.67 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.58 Total: -57.10 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.82 -9.36 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326288625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.763 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds