Wall clock time and date at job start Tue Mar 31 2020 05:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99706 * 2 1 4 4 H 1.48503 * 109.46886 * 270.00031 * 3 2 1 5 5 H 1.48496 * 109.47319 * 29.99910 * 3 2 1 6 6 H 1.48498 * 109.47158 * 150.00309 * 3 2 1 7 7 C 1.37876 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00189 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46789 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47399 * 54.52225 * 11 10 9 13 13 N 1.46897 * 109.47270 * 294.51871 * 11 10 9 14 14 C 1.50700 * 109.47117 * 174.51944 * 11 10 9 15 15 O 1.21287 * 119.99828 * 91.62472 * 14 11 10 16 16 N 1.34774 * 120.00450 * 271.90415 * 14 11 10 17 17 C 1.44319 * 116.31263 * 4.50944 * 16 14 11 18 18 C 1.52246 * 112.93399 * 171.78802 * 17 16 14 19 19 C 1.52940 * 110.52471 * 40.68431 * 18 17 16 20 20 H 1.09000 * 113.20020 * 63.79466 * 19 18 17 21 21 N 1.49206 * 106.86058 * 187.95439 * 19 18 17 22 22 C 1.48271 * 104.39373 * 70.65050 * 21 19 18 23 23 C 1.54554 * 106.70312 * 27.83274 * 22 21 19 24 24 C 1.53952 * 104.20291 * 359.42242 * 23 22 21 25 25 H 1.09004 * 109.14243 * 89.92660 * 24 23 22 26 26 C 1.44000 * 116.32045 * 184.76506 * 16 14 11 27 27 H 0.96999 * 120.00249 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47467 * 59.99898 * 9 7 2 29 29 H 1.08999 * 109.46675 * 299.99966 * 9 7 2 30 30 H 1.08992 * 109.47362 * 59.99920 * 10 9 7 31 31 H 1.08991 * 109.46761 * 299.99515 * 10 9 7 32 32 H 1.00892 * 111.00382 * 300.00091 * 13 11 10 33 33 H 1.00902 * 110.99756 * 63.95719 * 13 11 10 34 34 H 1.09000 * 108.74571 * 294.32152 * 17 16 14 35 35 H 1.09000 * 108.74878 * 52.41779 * 17 16 14 36 36 H 1.08997 * 110.60145 * 279.77136 * 18 17 16 37 37 H 1.08998 * 108.42702 * 160.21125 * 18 17 16 38 38 H 1.00904 * 111.68298 * 190.66814 * 21 19 18 39 39 H 1.08996 * 110.01372 * 268.52411 * 22 21 19 40 40 H 1.09006 * 110.05185 * 147.15992 * 22 21 19 41 41 H 1.08998 * 110.48524 * 240.74287 * 23 22 21 42 42 H 1.08998 * 110.59575 * 118.16126 * 23 22 21 43 43 H 1.09006 * 108.17951 * 299.31519 * 26 16 14 44 44 H 1.09000 * 108.18173 * 56.15031 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0020 12 1 0.7826 -5.0034 -0.8392 13 7 0.7373 -5.1239 1.2577 14 6 2.4542 -6.1292 -0.1374 15 8 2.9098 -6.6585 0.8542 16 7 2.8231 -6.5589 -1.3604 17 6 2.3173 -5.8056 -2.4827 18 6 2.9348 -6.2291 -3.8082 19 6 3.0721 -7.7509 -3.8740 20 1 2.1138 -8.2698 -3.8517 21 7 3.8562 -8.0619 -5.1047 22 6 5.2305 -7.6012 -4.7923 23 6 5.3949 -7.7016 -3.2588 24 6 4.0335 -8.2252 -2.7665 25 1 4.0534 -9.3150 -2.7528 26 6 3.6727 -7.7209 -1.3995 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5564 -0.8919 29 1 0.6242 -2.5574 0.8880 30 1 2.8714 -3.6047 0.8890 31 1 2.8727 -3.6038 -0.8909 32 1 1.3625 -5.1117 2.0495 33 1 0.0331 -4.4063 1.3419 34 1 1.2338 -5.9189 -2.5208 35 1 2.5515 -4.7519 -2.3315 36 1 3.9184 -5.7767 -3.9350 37 1 2.2823 -5.8949 -4.6148 38 1 3.8446 -9.0488 -5.3147 39 1 5.3598 -6.5680 -5.1145 40 1 5.9608 -8.2406 -5.2884 41 1 5.6030 -6.7203 -2.8325 42 1 6.1887 -8.4035 -3.0034 43 1 4.5955 -7.4855 -0.8691 44 1 3.1712 -8.5270 -0.8640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326288628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:33 Heat of formation + Delta-G solvation = -37.050738 kcal Electronic energy + Delta-G solvation = -23076.225445 eV Core-core repulsion = 19834.670257 eV Total energy + Delta-G solvation = -3241.555188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.00192 -39.20802 -35.73636 -35.52621 -32.90086 -32.25217 -30.83932 -29.90291 -29.02230 -26.73165 -24.84685 -23.89345 -23.22320 -21.23466 -20.65321 -19.57116 -18.37607 -17.48249 -17.03018 -16.32033 -16.00904 -15.64376 -15.05466 -14.59591 -14.51953 -14.35853 -14.15942 -13.81977 -13.57693 -13.24691 -12.92105 -12.63502 -12.38906 -12.24860 -12.02804 -11.75520 -11.59265 -11.38676 -11.11313 -11.04566 -10.90232 -10.87437 -10.67743 -10.63972 -9.95813 -9.87718 -9.27001 -9.19719 -8.95640 -8.47874 -8.42697 -8.17574 -6.08414 -4.11470 2.89440 3.09759 3.27151 3.34083 3.37465 3.77775 4.26746 4.39192 4.40685 4.55060 4.74640 4.83570 4.88599 4.92940 5.12013 5.19763 5.23477 5.27294 5.28004 5.43651 5.48369 5.57945 5.62355 5.69413 5.72123 5.77050 5.79582 5.89810 5.98053 6.09920 6.29848 6.33723 6.54190 6.81590 6.87831 7.01757 7.33448 7.51536 7.57890 7.64260 7.88595 7.91183 8.31313 8.42754 8.94390 9.53506 11.02469 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019785 B = 0.004134 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.905612 B = 6772.276042 C = 7553.156715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.137 4.137 11 C 0.073 3.927 12 H 0.097 0.903 13 N -0.832 5.832 14 C 0.518 3.482 15 O -0.538 6.538 16 N -0.602 5.602 17 C 0.107 3.893 18 C -0.114 4.114 19 C 0.078 3.922 20 H 0.097 0.903 21 N -0.670 5.670 22 C 0.039 3.961 23 C -0.149 4.149 24 C -0.127 4.127 25 H 0.080 0.920 26 C 0.140 3.860 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.345 0.655 33 H 0.354 0.646 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.336 0.664 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.887 -16.515 -9.358 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.177 4.177 11 C -0.042 4.042 12 H 0.115 0.885 13 N -0.364 5.364 14 C 0.307 3.693 15 O -0.414 6.414 16 N -0.337 5.337 17 C -0.017 4.017 18 C -0.152 4.152 19 C -0.032 4.032 20 H 0.116 0.884 21 N -0.296 5.296 22 C -0.091 4.091 23 C -0.188 4.188 24 C -0.147 4.147 25 H 0.098 0.902 26 C 0.016 3.984 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.152 0.848 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.551 -16.849 -9.612 20.475 hybrid contribution 1.258 1.223 0.780 1.920 sum 7.809 -15.626 -8.831 19.574 Atomic orbital electron populations 1.69946 1.06007 1.26776 1.50451 1.25000 0.94851 0.99256 0.95114 0.86596 0.79879 0.83410 0.78157 1.20596 1.21145 1.19903 1.21174 0.93007 0.90890 1.51111 0.92757 1.19095 0.93673 0.91044 0.97368 1.22390 0.99931 0.93926 1.01445 1.21574 0.94765 0.92367 0.95446 0.88532 1.58791 1.18546 1.55852 1.03254 1.21014 0.81814 0.84130 0.82376 1.90619 1.55277 1.58271 1.37243 1.46611 1.50711 1.29574 1.06829 1.21099 0.98371 0.96528 0.85679 1.21534 1.02695 0.94471 0.96489 1.22641 0.96723 0.96843 0.86987 0.88449 1.63261 1.09077 1.22494 1.34767 1.22922 0.90355 1.01931 0.93915 1.22925 0.96695 1.02263 0.96900 1.22103 0.96394 1.00764 0.95432 0.90156 1.19845 0.94948 0.87880 0.95738 0.92880 0.96300 0.96396 0.92621 0.92541 0.84144 0.83052 0.91333 0.90132 0.90590 0.89621 0.84832 0.90238 0.91563 0.90666 0.91184 0.92029 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.61 4.75 -27.88 -0.13 0.48 16 10 C -0.14 -2.73 4.59 -26.73 -0.12 -2.85 16 11 C 0.07 1.27 2.43 -68.87 -0.17 1.11 16 12 H 0.10 1.58 6.44 -51.93 -0.33 1.24 16 13 N -0.83 -14.55 9.02 -5.66 -0.05 -14.60 16 14 C 0.52 8.90 6.71 -10.99 -0.07 8.83 16 15 O -0.54 -10.78 15.99 5.55 0.09 -10.69 16 16 N -0.60 -8.32 3.20 -179.55 -0.57 -8.89 16 17 C 0.11 1.29 5.02 -5.59 -0.03 1.26 16 18 C -0.11 -1.15 5.26 -27.15 -0.14 -1.29 16 19 C 0.08 0.70 4.05 -65.87 -0.27 0.43 16 20 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 21 N -0.67 -5.50 7.21 -102.57 -0.74 -6.24 16 22 C 0.04 0.30 6.72 -2.25 -0.02 0.29 16 23 C -0.15 -1.25 5.66 -25.42 -0.14 -1.40 16 24 C -0.13 -1.15 2.94 -90.97 -0.27 -1.42 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 C 0.14 1.70 5.02 -6.81 -0.03 1.67 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.45 6.88 -51.93 -0.36 0.09 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.08 6.43 -51.93 -0.33 0.75 16 32 H 0.35 6.15 8.55 -39.30 -0.34 5.81 16 33 H 0.35 6.16 7.57 -39.29 -0.30 5.86 16 34 H 0.07 0.79 7.25 -51.93 -0.38 0.41 16 35 H 0.08 1.08 5.84 -51.93 -0.30 0.78 16 36 H 0.08 0.80 5.75 -51.93 -0.30 0.50 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.34 2.25 8.95 -39.29 -0.35 1.90 16 39 H 0.08 0.67 7.42 -51.93 -0.39 0.29 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.74 7.72 -51.93 -0.40 0.34 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.82 7.72 -51.93 -0.40 0.42 16 44 H 0.06 0.78 8.06 -51.93 -0.42 0.37 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -30.81 334.88 -9.41 -40.22 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.09 Total: 10.08 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -1.80 Total: -5.97 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.63 Total: -54.89 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.81 -9.41 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326288628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.170 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds