Wall clock time and date at job start Tue Mar 31 2020 05:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.08989 * 109.47407 * 54.99632 * 11 10 9 13 13 N 1.46904 * 109.46937 * 294.99269 * 11 10 9 14 14 C 1.50703 * 109.47021 * 175.00079 * 11 10 9 15 15 O 1.21284 * 120.00053 * 99.99657 * 14 11 10 16 16 N 1.34778 * 119.99500 * 279.99392 * 14 11 10 17 17 C 1.46591 * 119.70343 * 359.73186 * 16 14 11 18 18 C 1.53515 * 110.88487 * 227.59462 * 17 16 14 19 19 C 1.51681 * 107.38372 * 308.95818 * 18 17 16 20 20 H 1.09004 * 110.34587 * 305.06800 * 19 18 17 21 21 N 1.46725 * 116.50557 * 178.85071 * 19 18 17 22 22 C 1.49035 * 104.34234 * 200.02405 * 21 19 18 23 23 C 1.54949 * 106.85186 * 25.75400 * 22 21 19 24 24 C 1.53032 * 104.02775 * 2.28757 * 23 22 21 25 25 H 1.09008 * 110.51667 * 91.01275 * 24 23 22 26 26 C 1.47762 * 119.69333 * 179.97438 * 16 14 11 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 31 31 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 32 32 H 1.00896 * 111.00087 * 176.04298 * 13 11 10 33 33 H 1.00900 * 111.00049 * 300.00428 * 13 11 10 34 34 H 1.09000 * 109.23932 * 347.98163 * 17 16 14 35 35 H 1.08992 * 109.23947 * 107.38037 * 17 16 14 36 36 H 1.09001 * 109.97383 * 189.40990 * 18 17 16 37 37 H 1.09003 * 109.79352 * 68.39413 * 18 17 16 38 38 H 1.00902 * 111.00310 * 80.40025 * 21 19 18 39 39 H 1.09002 * 109.99026 * 266.40609 * 22 21 19 40 40 H 1.09003 * 110.01743 * 145.12084 * 22 21 19 41 41 H 1.09005 * 110.51675 * 243.65575 * 23 22 21 42 42 H 1.08999 * 110.63364 * 120.98672 * 23 22 21 43 43 H 1.09001 * 110.07568 * 247.48400 * 26 16 14 44 44 H 1.08993 * 110.07816 * 9.08404 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 1 0.7883 -5.0030 -0.8591 13 7 0.7279 -5.1244 1.2373 14 6 2.4547 -6.1293 -0.1459 15 8 2.7861 -6.7575 0.8372 16 7 2.9579 -6.4526 -1.3536 17 6 2.5483 -5.6927 -2.5384 18 6 2.1625 -6.6355 -3.6869 19 6 3.2988 -7.6249 -3.8621 20 1 4.2406 -7.0974 -4.0137 21 7 3.1243 -8.6450 -4.9022 22 6 4.0855 -9.7211 -4.5288 23 6 4.3031 -9.6177 -2.9982 24 6 3.3735 -8.4811 -2.5672 25 1 2.3946 -8.8724 -2.2901 26 6 3.9135 -7.5734 -1.4722 27 1 -0.4850 0.8401 -0.0004 28 1 0.6242 -2.5609 0.8844 29 1 0.6244 -2.5529 -0.8956 30 1 2.8718 -3.6005 -0.9002 31 1 2.8717 -3.6084 0.8798 32 1 0.1634 -5.9607 1.2308 33 1 1.3474 -5.1125 2.0336 34 1 1.6923 -5.0671 -2.2855 35 1 3.3735 -5.0580 -2.8610 36 1 2.0220 -6.0656 -4.6053 37 1 1.2441 -7.1664 -3.4360 38 1 3.3370 -8.2710 -5.8149 39 1 5.0312 -9.5734 -5.0503 40 1 3.6698 -10.6967 -4.7809 41 1 5.3406 -9.3678 -2.7758 42 1 4.0217 -10.5489 -2.5064 43 1 4.8985 -7.1976 -1.7493 44 1 3.9709 -8.1175 -0.5295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326288629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:35 Heat of formation + Delta-G solvation = -39.044324 kcal Electronic energy + Delta-G solvation = -22885.582453 eV Core-core repulsion = 19643.940817 eV Total energy + Delta-G solvation = -3241.641636 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73795 -39.07602 -35.82939 -35.29997 -32.83195 -32.36265 -31.08174 -30.07651 -28.76357 -26.53275 -24.81484 -23.18776 -22.96313 -21.34467 -20.64427 -20.05958 -18.89346 -17.27056 -16.59715 -16.31254 -15.87021 -15.53141 -15.44697 -14.90096 -14.46278 -14.38840 -14.14272 -13.87794 -13.24687 -13.12627 -13.00249 -12.68087 -12.34169 -12.21377 -11.97932 -11.66295 -11.59788 -11.53183 -11.21441 -10.94360 -10.87476 -10.65200 -10.55076 -10.42587 -10.03379 -9.77751 -9.36035 -9.01172 -8.90532 -8.69270 -8.33834 -8.19139 -5.93714 -3.95936 2.75852 2.98005 3.35822 3.40580 3.42892 3.74309 4.19809 4.44486 4.49573 4.55385 4.70235 4.80514 4.88775 4.94163 5.03673 5.11897 5.20652 5.28267 5.34802 5.41704 5.43006 5.52653 5.54411 5.59868 5.68707 5.74262 5.81609 5.83893 5.94327 6.05072 6.42241 6.44142 6.49521 6.66479 6.97850 7.07591 7.33201 7.52255 7.75569 7.80950 7.95895 8.13296 8.27468 8.48422 9.11779 9.67117 11.17109 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024238 B = 0.003751 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.954917 B = 7463.825051 C = 8053.465262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.096 4.096 11 C 0.077 3.923 12 H 0.099 0.901 13 N -0.807 5.807 14 C 0.484 3.516 15 O -0.555 6.555 16 N -0.611 5.611 17 C 0.104 3.896 18 C -0.116 4.116 19 C 0.064 3.936 20 H 0.049 0.951 21 N -0.663 5.663 22 C 0.040 3.960 23 C -0.123 4.123 24 C -0.105 4.105 25 H 0.087 0.913 26 C 0.120 3.880 27 H 0.260 0.740 28 H 0.035 0.965 29 H 0.013 0.987 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.334 0.666 33 H 0.347 0.653 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.337 0.663 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 -18.569 -9.777 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.069 0.931 9 C -0.005 4.005 10 C -0.134 4.134 11 C -0.039 4.039 12 H 0.117 0.883 13 N -0.335 5.335 14 C 0.272 3.728 15 O -0.433 6.433 16 N -0.345 5.345 17 C -0.020 4.020 18 C -0.155 4.155 19 C -0.047 4.047 20 H 0.067 0.933 21 N -0.291 5.291 22 C -0.089 4.089 23 C -0.162 4.162 24 C -0.125 4.125 25 H 0.106 0.894 26 C -0.003 4.003 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.161 0.839 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.152 0.848 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.113 -18.385 -9.197 21.446 hybrid contribution 2.022 0.412 -0.327 2.089 sum 8.136 -17.973 -9.524 21.907 Atomic orbital electron populations 1.69964 1.05936 1.26528 1.50714 1.24986 0.94800 0.99015 0.95472 0.86717 0.79615 0.83456 0.78518 1.20386 1.21330 1.20328 1.21239 0.92842 0.91329 1.50749 0.93072 1.19005 0.93516 0.89767 0.98194 1.21675 0.98894 0.92136 1.00729 1.21900 0.93613 0.93422 0.94953 0.88297 1.59017 1.26918 1.44249 1.03303 1.22787 0.82021 0.85788 0.82234 1.90626 1.61426 1.54236 1.37052 1.48358 1.44947 1.33433 1.07745 1.21802 1.01806 0.93497 0.84863 1.21632 0.98471 0.96901 0.98513 1.22243 0.97682 0.92995 0.91734 0.93348 1.62984 1.51168 1.10042 1.04917 1.23000 0.94204 0.96471 0.95229 1.22214 0.99716 0.99043 0.95224 1.22231 1.00665 0.94791 0.94826 0.89425 1.21501 0.91710 0.87364 0.99709 0.93034 0.94669 0.96895 0.92798 0.92865 0.85483 0.83859 0.88138 0.91224 0.90160 0.90485 0.84751 0.93863 0.90321 0.91173 0.90662 0.91621 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 10 C -0.10 -1.94 4.59 -26.74 -0.12 -2.06 16 11 C 0.08 1.30 2.30 -68.86 -0.16 1.14 16 12 H 0.10 1.59 6.37 -51.94 -0.33 1.26 16 13 N -0.81 -13.85 8.44 -5.66 -0.05 -13.89 16 14 C 0.48 7.87 6.91 -10.98 -0.08 7.79 16 15 O -0.56 -10.42 15.61 5.55 0.09 -10.34 16 16 N -0.61 -8.12 3.01 -172.80 -0.52 -8.64 16 17 C 0.10 1.20 5.37 -3.73 -0.02 1.18 16 18 C -0.12 -1.13 6.02 -27.13 -0.16 -1.29 16 19 C 0.06 0.59 2.63 -67.19 -0.18 0.41 16 20 H 0.05 0.45 8.05 -51.93 -0.42 0.03 16 21 N -0.66 -5.66 7.43 -103.46 -0.77 -6.43 16 22 C 0.04 0.30 7.56 -1.61 -0.01 0.28 16 23 C -0.12 -0.97 6.60 -25.69 -0.17 -1.14 16 24 C -0.11 -1.04 2.75 -89.76 -0.25 -1.29 16 25 H 0.09 1.01 8.08 -51.92 -0.42 0.59 16 26 C 0.12 1.39 5.96 -3.79 -0.02 1.37 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 1.02 7.24 -51.93 -0.38 0.65 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.33 5.00 9.06 -39.29 -0.36 4.64 16 33 H 0.35 6.06 8.58 -39.29 -0.34 5.72 16 34 H 0.10 1.24 5.22 -51.93 -0.27 0.97 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 38 H 0.34 2.38 8.91 -39.29 -0.35 2.03 16 39 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.50 8.03 -51.93 -0.42 0.09 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 44 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -31.99 342.30 -9.47 -41.46 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -7.38 Total: 8.45 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.72 Total: -6.36 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.60 Total: -55.00 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.99 -9.47 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326288629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.416 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds