Wall clock time and date at job start Tue Mar 31 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99785 * 2 1 4 4 H 1.48504 * 109.46781 * 240.00028 * 3 2 1 5 5 H 1.48500 * 109.47287 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47307 * 119.99742 * 3 2 1 7 7 C 1.37879 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99690 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46760 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47177 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46830 * 54.99549 * 11 10 9 13 13 N 1.46908 * 109.46892 * 295.00336 * 11 10 9 14 14 C 1.50697 * 109.47335 * 175.00343 * 11 10 9 15 15 O 1.21278 * 120.00284 * 99.99659 * 14 11 10 16 16 N 1.34780 * 119.99536 * 279.99750 * 14 11 10 17 17 C 1.47216 * 121.36134 * 0.02562 * 16 14 11 18 18 C 1.52758 * 107.76187 * 237.80340 * 17 16 14 19 19 C 1.53153 * 110.83990 * 302.12266 * 18 17 16 20 20 H 1.08999 * 111.79923 * 289.70389 * 19 18 17 21 21 N 1.49042 * 106.19103 * 166.68285 * 19 18 17 22 22 C 1.47632 * 108.09550 * 270.86171 * 21 19 18 23 23 C 1.54718 * 107.20518 * 356.38677 * 22 21 19 24 24 C 1.53941 * 110.87710 * 55.29571 * 19 18 17 25 25 H 1.08993 * 109.49743 * 188.83865 * 24 19 18 26 26 C 1.46712 * 121.35580 * 179.72036 * 16 14 11 27 27 H 0.97000 * 120.00622 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46934 * 60.00492 * 9 7 2 29 29 H 1.08998 * 109.47680 * 300.00582 * 9 7 2 30 30 H 1.08999 * 109.47673 * 60.00729 * 10 9 7 31 31 H 1.09002 * 109.47790 * 299.99999 * 10 9 7 32 32 H 1.00900 * 110.99509 * 299.99774 * 13 11 10 33 33 H 1.00896 * 111.00052 * 63.94885 * 13 11 10 34 34 H 1.09007 * 109.79942 * 357.36847 * 17 16 14 35 35 H 1.08999 * 109.80137 * 118.17797 * 17 16 14 36 36 H 1.08997 * 109.20485 * 62.47657 * 18 17 16 37 37 H 1.09007 * 109.20107 * 181.77665 * 18 17 16 38 38 H 1.00902 * 110.99929 * 32.81404 * 21 19 18 39 39 H 1.09002 * 109.89216 * 236.98997 * 22 21 19 40 40 H 1.08998 * 110.03571 * 115.86719 * 22 21 19 41 41 H 1.09004 * 110.86453 * 220.21626 * 23 22 21 42 42 H 1.08993 * 111.04420 * 96.62331 * 23 22 21 43 43 H 1.09004 * 109.14663 * 248.49097 * 26 16 14 44 44 H 1.09000 * 109.14354 * 7.63424 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0033 12 1 0.7885 -5.0075 -0.8387 13 7 0.7282 -5.1177 1.2584 14 6 2.4551 -6.1299 -0.1194 15 8 2.7867 -6.7528 0.8669 16 7 2.9584 -6.4596 -1.3255 17 6 2.5771 -5.7236 -2.5421 18 6 1.9812 -6.7280 -3.5268 19 6 2.9825 -7.8438 -3.8398 20 1 3.8163 -7.4824 -4.4416 21 7 2.2080 -8.9170 -4.5252 22 6 1.6775 -9.8300 -3.4934 23 6 2.2235 -9.3456 -2.1293 24 6 3.4624 -8.5286 -2.5473 25 1 4.2842 -9.2064 -2.7783 26 6 3.9137 -7.5626 -1.4784 27 1 -0.4851 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.8720 -3.6036 0.8927 31 1 2.8721 -3.6051 -0.8873 32 1 1.3478 -5.1015 2.0546 33 1 0.0234 -4.3997 1.3339 34 1 1.8359 -4.9630 -2.2964 35 1 3.4574 -5.2533 -2.9802 36 1 1.0816 -7.1647 -3.0933 37 1 1.7191 -6.2120 -4.4506 38 1 1.4615 -8.5259 -5.0803 39 1 2.0167 -10.8473 -3.6886 40 1 0.5880 -9.7968 -3.4899 41 1 2.5090 -10.1909 -1.5031 42 1 1.4964 -8.7144 -1.6185 43 1 4.8879 -7.1566 -1.7511 44 1 4.0014 -8.0935 -0.5305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326288631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:37 Heat of formation + Delta-G solvation = -42.086951 kcal Electronic energy + Delta-G solvation = -23164.815308 eV Core-core repulsion = 19923.041733 eV Total energy + Delta-G solvation = -3241.773575 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75862 -38.93541 -35.60633 -35.47955 -32.91140 -32.28885 -30.73898 -29.90827 -28.68592 -26.78185 -25.01243 -23.43716 -23.17889 -21.46896 -20.71236 -19.64025 -18.57451 -17.55070 -16.52181 -16.31852 -15.85082 -15.77479 -14.95658 -14.64144 -14.42605 -14.16724 -13.92657 -13.67865 -13.50165 -13.18574 -12.86639 -12.77840 -12.50062 -12.16321 -12.08421 -11.96388 -11.73584 -11.59946 -11.10249 -11.06724 -10.92908 -10.72720 -10.66539 -10.55972 -10.01570 -9.89505 -9.30914 -9.20810 -8.81826 -8.49601 -8.46215 -8.20715 -6.10974 -4.14362 2.89112 3.03460 3.26705 3.31758 3.34117 3.88236 4.33635 4.37136 4.40336 4.61327 4.76483 4.85346 4.90628 5.06406 5.14809 5.17929 5.25188 5.28680 5.36501 5.45096 5.51999 5.55516 5.61107 5.68410 5.70900 5.74047 5.76745 5.91860 6.00360 6.11000 6.24920 6.47527 6.53664 6.56664 6.83547 7.07977 7.37406 7.48085 7.56490 7.62169 7.85584 7.88113 8.28178 8.41682 8.91288 9.50725 10.99833 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025446 B = 0.003899 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.125644 B = 7179.460416 C = 7592.050325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.139 4.139 11 C 0.075 3.925 12 H 0.095 0.905 13 N -0.831 5.831 14 C 0.531 3.469 15 O -0.539 6.539 16 N -0.613 5.613 17 C 0.106 3.894 18 C -0.163 4.163 19 C 0.084 3.916 20 H 0.098 0.902 21 N -0.684 5.684 22 C 0.046 3.954 23 C -0.133 4.133 24 C -0.104 4.104 25 H 0.087 0.913 26 C 0.121 3.879 27 H 0.262 0.738 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.345 0.655 33 H 0.354 0.646 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.339 0.661 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 -16.285 -8.421 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.178 4.178 11 C -0.040 4.040 12 H 0.113 0.887 13 N -0.363 5.363 14 C 0.320 3.680 15 O -0.415 6.415 16 N -0.348 5.348 17 C -0.017 4.017 18 C -0.202 4.202 19 C -0.025 4.025 20 H 0.116 0.884 21 N -0.313 5.313 22 C -0.083 4.083 23 C -0.172 4.172 24 C -0.124 4.124 25 H 0.106 0.894 26 C -0.002 4.002 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.156 0.844 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.405 -17.647 -8.333 20.007 hybrid contribution 0.060 2.510 0.441 2.549 sum 4.465 -15.138 -7.893 17.646 Atomic orbital electron populations 1.69935 1.06021 1.26926 1.50310 1.25004 0.94860 0.99282 0.95072 0.86646 0.79604 0.83016 0.78687 1.20198 1.21203 1.20215 1.21137 0.92984 0.90876 1.51312 0.92766 1.19090 0.93665 0.91100 0.97299 1.22409 0.99920 0.93897 1.01596 1.21493 0.94680 0.92459 0.95376 0.88720 1.58759 1.18471 1.55860 1.03222 1.20847 0.80869 0.84407 0.81910 1.90620 1.60540 1.53723 1.36593 1.48045 1.45853 1.33504 1.07391 1.21759 1.01060 0.94221 0.84696 1.22639 0.99454 0.98007 1.00120 1.22562 0.95973 0.90221 0.93738 0.88385 1.62357 1.27938 1.18465 1.22549 1.22642 0.97846 0.97507 0.90305 1.22675 0.97552 0.99858 0.97086 1.21793 0.98743 0.97167 0.94654 0.89430 1.20869 0.91568 0.88033 0.99755 0.92804 0.96418 0.96427 0.92655 0.92441 0.84130 0.83087 0.88489 0.90681 0.91421 0.90346 0.84447 0.90861 0.93321 0.90804 0.91023 0.91659 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 10 C -0.14 -2.69 4.53 -26.73 -0.12 -2.82 16 11 C 0.07 1.28 2.36 -68.86 -0.16 1.11 16 12 H 0.09 1.54 6.66 -51.93 -0.35 1.19 16 13 N -0.83 -14.42 8.94 -5.65 -0.05 -14.47 16 14 C 0.53 8.89 6.97 -10.99 -0.08 8.82 16 15 O -0.54 -10.58 15.72 5.56 0.09 -10.50 16 16 N -0.61 -8.14 2.80 -174.29 -0.49 -8.63 16 17 C 0.11 1.20 5.67 -3.78 -0.02 1.18 16 18 C -0.16 -1.52 4.83 -26.78 -0.13 -1.65 16 19 C 0.08 0.76 4.04 -65.95 -0.27 0.50 16 20 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 21 N -0.68 -6.12 7.22 -103.07 -0.74 -6.87 16 22 C 0.05 0.41 7.29 -2.52 -0.02 0.39 16 23 C -0.13 -1.34 5.88 -25.21 -0.15 -1.49 16 24 C -0.10 -1.00 2.88 -90.53 -0.26 -1.27 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 C 0.12 1.39 5.84 -4.94 -0.03 1.36 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.07 7.17 -51.93 -0.37 0.70 16 32 H 0.35 6.09 8.58 -39.29 -0.34 5.76 16 33 H 0.35 6.13 7.55 -39.29 -0.30 5.83 16 34 H 0.10 1.21 5.20 -51.92 -0.27 0.94 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.71 6.93 -51.93 -0.36 0.35 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.34 2.69 8.36 -39.29 -0.33 2.36 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.87 7.42 -51.93 -0.39 0.49 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.21 7.04 -51.93 -0.37 0.84 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -30.47 337.66 -9.35 -39.83 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -7.19 Total: 10.88 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -1.78 Total: -6.37 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.55 Total: -54.98 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.47 -9.35 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326288631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.261 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds