Wall clock time and date at job start Tue Mar 31 2020 05:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99952 * 2 1 4 4 H 1.48506 * 109.46746 * 269.99956 * 3 2 1 5 5 H 1.48500 * 109.47137 * 29.99337 * 3 2 1 6 6 H 1.48491 * 109.47314 * 149.99876 * 3 2 1 7 7 C 1.37881 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99328 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00179 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47160 * 305.49533 * 11 10 9 13 13 N 1.46898 * 109.47404 * 65.49246 * 11 10 9 14 14 C 1.50696 * 109.47376 * 185.49463 * 11 10 9 15 15 O 1.21278 * 120.00186 * 263.53378 * 14 11 10 16 16 N 1.34786 * 119.99903 * 83.53171 * 14 11 10 17 17 C 1.44765 * 120.02576 * 175.18693 * 16 14 11 18 18 C 1.51416 * 112.67375 * 264.23103 * 17 16 14 19 19 C 1.51752 * 112.79217 * 285.95269 * 18 17 16 20 20 H 1.08994 * 112.60476 * 187.10335 * 19 18 17 21 21 C 1.55215 * 103.52046 * 308.46515 * 19 18 17 22 22 C 1.53932 * 105.33457 * 98.07593 * 21 19 18 23 23 C 1.49968 * 105.35010 * 359.68742 * 22 21 19 24 24 H 1.09000 * 105.73839 * 130.31655 * 23 22 21 25 25 C 1.50413 * 120.02442 * 355.16196 * 16 14 11 26 26 N 1.48451 * 108.64001 * 62.42525 * 19 18 17 27 27 H 0.96996 * 120.00062 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47101 * 59.99795 * 9 7 2 29 29 H 1.09000 * 109.46940 * 300.00121 * 9 7 2 30 30 H 1.08995 * 109.46863 * 60.00199 * 10 9 7 31 31 H 1.08996 * 109.46801 * 300.00011 * 10 9 7 32 32 H 1.00899 * 111.00443 * 296.05309 * 13 11 10 33 33 H 1.00907 * 110.99969 * 60.00145 * 13 11 10 34 34 H 1.09003 * 108.84621 * 25.05375 * 17 16 14 35 35 H 1.09006 * 108.84223 * 143.40795 * 17 16 14 36 36 H 1.08997 * 108.82200 * 165.10163 * 18 17 16 37 37 H 1.08993 * 108.81971 * 46.80517 * 18 17 16 38 38 H 1.09008 * 110.27438 * 339.11265 * 21 19 18 39 39 H 1.09002 * 110.27218 * 217.04433 * 21 19 18 40 40 H 1.08991 * 110.27001 * 118.65670 * 22 21 19 41 41 H 1.09006 * 110.26758 * 240.72021 * 22 21 19 42 42 H 1.09006 * 109.51801 * 30.68905 * 25 16 14 43 43 H 1.09003 * 109.56196 * 270.55167 * 25 16 14 44 44 H 1.00892 * 110.99942 * 156.09034 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 1 0.7816 -5.0036 0.8364 13 7 0.7384 -5.1236 -1.2606 14 6 2.4539 -6.1293 0.1359 15 8 2.8428 -6.7156 -0.8519 16 7 2.8925 -6.4994 1.3555 17 6 3.7450 -7.6608 1.4972 18 6 2.9712 -8.9129 1.8526 19 6 2.5000 -8.9231 3.2951 20 1 2.0527 -9.8744 3.5830 21 6 3.7906 -8.6153 4.1006 22 6 3.7305 -7.1076 4.4051 23 6 2.4566 -6.6262 3.7772 24 1 1.9434 -6.0546 4.5504 25 6 2.4970 -5.7055 2.5704 26 7 1.5677 -7.7858 3.4978 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8720 -3.6043 -0.8894 32 1 0.0343 -4.4059 -1.3453 33 1 1.3645 -5.1111 -2.0519 34 1 4.2719 -7.8275 0.5576 35 1 4.4782 -7.4660 2.2798 36 1 3.6098 -9.7802 1.6853 37 1 2.1026 -8.9870 1.1985 38 1 4.6728 -8.8450 3.5029 39 1 3.8024 -9.1878 5.0281 40 1 3.7074 -6.9405 5.4819 41 1 4.5862 -6.5984 3.9615 42 1 1.5114 -5.2670 2.4139 43 1 3.2253 -4.9128 2.7414 44 1 0.9471 -7.9608 4.2737 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327059574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:12 Heat of formation + Delta-G solvation = -31.375055 kcal Electronic energy + Delta-G solvation = -23380.853994 eV Core-core repulsion = 20139.544922 eV Total energy + Delta-G solvation = -3241.309072 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81873 -38.87470 -35.47758 -34.57226 -33.26361 -32.75028 -30.63101 -29.83291 -28.27665 -26.78755 -25.82606 -24.01493 -22.48820 -20.80352 -20.14509 -19.80040 -18.55946 -17.78414 -16.67295 -16.22927 -16.04606 -15.50090 -14.73039 -14.57323 -14.31216 -14.13225 -13.95890 -13.73063 -13.40042 -13.16492 -12.73318 -12.42245 -12.25832 -12.05571 -11.80656 -11.68257 -11.61931 -11.27334 -11.10202 -11.01510 -10.94241 -10.77011 -10.65470 -10.43379 -9.92132 -9.79549 -9.23085 -9.11613 -8.87248 -8.41807 -8.39171 -8.05556 -6.06145 -4.09039 3.06811 3.20723 3.28372 3.35056 3.38020 3.94720 4.27975 4.39124 4.41250 4.62321 4.79603 4.91626 5.01641 5.07056 5.25276 5.28765 5.30650 5.33308 5.36334 5.46088 5.58831 5.62548 5.64174 5.70929 5.83183 5.86370 5.93190 5.96795 6.01544 6.23790 6.36516 6.58771 6.59529 6.82376 6.93217 7.13470 7.50431 7.56745 7.65973 7.75412 7.91420 8.00643 8.34593 8.63030 8.97052 9.55648 11.04750 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023374 B = 0.004197 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.646353 B = 6669.301950 C = 7241.583550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.530 3.470 15 O -0.546 6.546 16 N -0.602 5.602 17 C 0.115 3.885 18 C -0.127 4.127 19 C 0.068 3.932 20 H 0.088 0.912 21 C -0.152 4.152 22 C -0.134 4.134 23 C 0.051 3.949 24 H 0.066 0.934 25 C 0.134 3.866 26 N -0.646 5.646 27 H 0.261 0.739 28 H 0.017 0.983 29 H 0.018 0.982 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.352 0.648 33 H 0.344 0.656 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.816 -16.678 10.830 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.318 3.682 15 O -0.423 6.423 16 N -0.336 5.336 17 C -0.008 4.008 18 C -0.166 4.166 19 C -0.042 4.042 20 H 0.106 0.894 21 C -0.191 4.191 22 C -0.172 4.172 23 C -0.059 4.059 24 H 0.084 0.916 25 C 0.012 3.988 26 N -0.273 5.273 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.167 0.833 33 H 0.157 0.843 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.449 -17.427 9.864 20.753 hybrid contribution 1.111 1.775 0.907 2.283 sum 6.560 -15.652 10.772 20.101 Atomic orbital electron populations 1.69952 1.06000 1.26716 1.50546 1.25005 0.94844 0.99230 0.95184 0.86602 0.79829 0.83454 0.78173 1.20639 1.21179 1.19911 1.21189 0.92996 0.90924 1.50960 0.92771 1.19093 0.93708 0.91096 0.97304 1.22372 0.99856 0.94112 1.01363 1.21508 0.94811 0.92460 0.95198 0.88596 1.58756 1.18532 1.55751 1.03238 1.20795 0.80913 0.84251 0.82211 1.90600 1.58108 1.56442 1.37154 1.48211 1.50684 1.28167 1.06555 1.20709 0.92529 0.85327 1.02268 1.21488 1.01019 0.97826 0.96256 1.22539 0.91006 0.94631 0.96055 0.89360 1.23222 0.99747 0.95789 1.00374 1.21819 0.98541 0.96206 1.00664 1.21646 0.93560 0.93829 0.96873 0.91577 1.22192 1.01859 0.92125 0.82627 1.63564 1.16372 1.02744 1.44586 0.92919 0.96449 0.96381 0.92673 0.92801 0.83275 0.84281 0.90307 0.91153 0.91349 0.91248 0.90440 0.91975 0.90933 0.90371 0.88810 0.90870 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.62 4.75 -27.88 -0.13 0.48 16 10 C -0.14 -2.78 4.72 -26.73 -0.13 -2.91 16 11 C 0.08 1.37 2.46 -68.87 -0.17 1.20 16 12 H 0.10 1.69 6.30 -51.92 -0.33 1.37 16 13 N -0.83 -15.30 8.97 -5.66 -0.05 -15.35 16 14 C 0.53 9.56 6.90 -10.98 -0.08 9.48 16 15 O -0.55 -11.43 15.72 5.56 0.09 -11.34 16 16 N -0.60 -8.72 2.88 -173.41 -0.50 -9.22 16 17 C 0.12 1.45 5.07 -5.77 -0.03 1.42 16 18 C -0.13 -1.39 4.95 -28.16 -0.14 -1.53 16 19 C 0.07 0.60 4.51 -66.31 -0.30 0.30 16 20 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.15 -1.13 5.92 -25.07 -0.15 -1.28 16 22 C -0.13 -1.05 5.81 -27.75 -0.16 -1.21 16 23 C 0.05 0.49 2.64 -68.78 -0.18 0.31 16 24 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 25 C 0.13 1.65 5.34 -2.44 -0.01 1.64 16 26 N -0.65 -6.40 6.85 -98.96 -0.68 -7.08 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.02 0.44 6.88 -51.93 -0.36 0.09 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 1.07 7.20 -51.93 -0.37 0.70 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.35 6.43 7.57 -39.29 -0.30 6.13 16 33 H 0.34 6.41 8.56 -39.29 -0.34 6.08 16 34 H 0.08 1.13 7.15 -51.93 -0.37 0.76 16 35 H 0.07 0.74 4.22 -51.93 -0.22 0.53 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.57 6.56 -51.92 -0.34 0.23 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.64 7.11 -51.93 -0.37 0.27 16 42 H 0.09 1.25 5.96 -51.93 -0.31 0.94 16 43 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 44 H 0.34 2.73 8.92 -39.30 -0.35 2.38 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -31.80 331.61 -9.29 -41.10 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -6.98 Total: 11.20 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.89 Total: -5.24 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.49 Total: -57.00 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.80 -9.29 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327059574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.724 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds