Wall clock time and date at job start Tue Mar 31 2020 05:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99952 * 2 1 4 4 H 1.48506 * 109.46746 * 269.99956 * 3 2 1 5 5 H 1.48500 * 109.47137 * 29.99337 * 3 2 1 6 6 H 1.48491 * 109.47314 * 149.99876 * 3 2 1 7 7 C 1.37881 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99328 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00179 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47129 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47160 * 305.49533 * 11 10 9 13 13 N 1.46898 * 109.47404 * 65.49246 * 11 10 9 14 14 C 1.50696 * 109.47376 * 185.49463 * 11 10 9 15 15 O 1.21278 * 120.00186 * 263.53378 * 14 11 10 16 16 N 1.34786 * 119.99903 * 83.53171 * 14 11 10 17 17 C 1.44765 * 120.02576 * 175.18693 * 16 14 11 18 18 C 1.51416 * 112.67375 * 264.23103 * 17 16 14 19 19 C 1.51752 * 112.79217 * 285.95269 * 18 17 16 20 20 H 1.08994 * 112.60476 * 187.10335 * 19 18 17 21 21 C 1.55215 * 103.52046 * 308.46515 * 19 18 17 22 22 C 1.53932 * 105.33457 * 98.07593 * 21 19 18 23 23 C 1.49968 * 105.35010 * 359.68742 * 22 21 19 24 24 H 1.09000 * 105.73839 * 130.31655 * 23 22 21 25 25 C 1.50413 * 120.02442 * 355.16196 * 16 14 11 26 26 N 1.48451 * 108.64001 * 62.42525 * 19 18 17 27 27 H 0.96996 * 120.00062 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47101 * 59.99795 * 9 7 2 29 29 H 1.09000 * 109.46940 * 300.00121 * 9 7 2 30 30 H 1.08995 * 109.46863 * 60.00199 * 10 9 7 31 31 H 1.08996 * 109.46801 * 300.00011 * 10 9 7 32 32 H 1.00899 * 111.00443 * 296.05309 * 13 11 10 33 33 H 1.00907 * 110.99969 * 60.00145 * 13 11 10 34 34 H 1.09003 * 108.84621 * 25.05375 * 17 16 14 35 35 H 1.09006 * 108.84223 * 143.40795 * 17 16 14 36 36 H 1.08997 * 108.82200 * 165.10163 * 18 17 16 37 37 H 1.08993 * 108.81971 * 46.80517 * 18 17 16 38 38 H 1.09008 * 110.27438 * 339.11265 * 21 19 18 39 39 H 1.09002 * 110.27218 * 217.04433 * 21 19 18 40 40 H 1.08991 * 110.27001 * 118.65670 * 22 21 19 41 41 H 1.09006 * 110.26758 * 240.72021 * 22 21 19 42 42 H 1.09006 * 109.51801 * 30.68905 * 25 16 14 43 43 H 1.09003 * 109.56196 * 270.55167 * 25 16 14 44 44 H 1.00892 * 110.99942 * 156.09034 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 1 0.7816 -5.0036 0.8364 13 7 0.7384 -5.1236 -1.2606 14 6 2.4539 -6.1293 0.1359 15 8 2.8428 -6.7156 -0.8519 16 7 2.8925 -6.4994 1.3555 17 6 3.7450 -7.6608 1.4972 18 6 2.9712 -8.9129 1.8526 19 6 2.5000 -8.9231 3.2951 20 1 2.0527 -9.8744 3.5830 21 6 3.7906 -8.6153 4.1006 22 6 3.7305 -7.1076 4.4051 23 6 2.4566 -6.6262 3.7772 24 1 1.9434 -6.0546 4.5504 25 6 2.4970 -5.7055 2.5704 26 7 1.5677 -7.7858 3.4978 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8719 -3.6043 0.8905 31 1 2.8720 -3.6043 -0.8894 32 1 0.0343 -4.4059 -1.3453 33 1 1.3645 -5.1111 -2.0519 34 1 4.2719 -7.8275 0.5576 35 1 4.4782 -7.4660 2.2798 36 1 3.6098 -9.7802 1.6853 37 1 2.1026 -8.9870 1.1985 38 1 4.6728 -8.8450 3.5029 39 1 3.8024 -9.1878 5.0281 40 1 3.7074 -6.9405 5.4819 41 1 4.5862 -6.5984 3.9615 42 1 1.5114 -5.2670 2.4139 43 1 3.2253 -4.9128 2.7414 44 1 0.9471 -7.9608 4.2737 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327059574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:12 Heat of formation + Delta-G solvation = -55.581615 kcal Electronic energy + Delta-G solvation = -23381.903669 eV Core-core repulsion = 20139.544922 eV Total energy + Delta-G solvation = -3242.358747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.80642 -40.09054 -37.12359 -35.74855 -34.87487 -34.04665 -31.69299 -31.29232 -29.40785 -28.06587 -27.12970 -25.60137 -23.67832 -22.21757 -21.25626 -20.67662 -19.75797 -18.99567 -18.30033 -17.64200 -17.19361 -16.53513 -16.40410 -15.89467 -15.70361 -15.51594 -15.11647 -14.78667 -14.70065 -14.49840 -14.06578 -13.79856 -13.55326 -13.41570 -13.08905 -12.91818 -12.66290 -12.59736 -12.49966 -12.44692 -12.14906 -11.86844 -11.70522 -11.68086 -11.63673 -11.29839 -11.18447 -10.61999 -10.54983 -9.72383 -9.60930 -9.50550 -8.20178 -6.30760 1.40406 1.41087 1.51728 1.65521 2.01036 2.40912 3.13321 3.20738 3.45288 3.61568 3.74597 3.77358 3.94390 4.06557 4.11194 4.17626 4.23851 4.35206 4.43623 4.49542 4.54273 4.66123 4.71129 4.75724 4.81581 4.88515 4.98026 5.03315 5.08620 5.10557 5.18183 5.28688 5.37477 5.46901 5.65036 5.69087 5.80982 5.88270 6.07094 6.21995 6.38015 6.47523 6.51943 6.84166 7.24862 7.38303 8.90681 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023374 B = 0.004197 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.646353 B = 6669.301950 C = 7241.583550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.033 3.967 10 C -0.118 4.118 11 C 0.083 3.917 12 H 0.102 0.898 13 N -0.831 5.831 14 C 0.524 3.476 15 O -0.582 6.582 16 N -0.593 5.593 17 C 0.111 3.889 18 C -0.122 4.122 19 C 0.070 3.930 20 H 0.104 0.896 21 C -0.145 4.145 22 C -0.131 4.131 23 C 0.053 3.947 24 H 0.079 0.921 25 C 0.126 3.874 26 N -0.666 5.666 27 H 0.264 0.736 28 H 0.000 1.000 29 H 0.002 0.998 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.351 0.649 33 H 0.343 0.657 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.034 0.966 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.101 -17.082 12.882 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.004 4.004 10 C -0.158 4.158 11 C -0.032 4.032 12 H 0.120 0.880 13 N -0.362 5.362 14 C 0.312 3.688 15 O -0.462 6.462 16 N -0.325 5.325 17 C -0.012 4.012 18 C -0.161 4.161 19 C -0.040 4.040 20 H 0.122 0.878 21 C -0.185 4.185 22 C -0.170 4.170 23 C -0.057 4.057 24 H 0.097 0.903 25 C 0.005 3.995 26 N -0.295 5.295 27 H 0.073 0.927 28 H 0.018 0.982 29 H 0.021 0.979 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.166 0.834 33 H 0.155 0.845 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.740 -17.848 11.964 22.520 hybrid contribution 0.677 1.875 0.283 2.013 sum 7.417 -15.974 12.247 21.452 Atomic orbital electron populations 1.70066 1.07513 1.27758 1.51313 1.25854 0.95700 1.02915 0.94688 0.85540 0.78795 0.78955 0.78324 1.20222 1.20588 1.18875 1.21594 0.93303 0.92363 1.50926 0.92743 1.18940 0.93913 0.91941 0.95627 1.22106 0.98789 0.93749 1.01162 1.21404 0.94795 0.91691 0.95272 0.88007 1.58764 1.18507 1.55584 1.03368 1.20703 0.80933 0.84122 0.83019 1.90578 1.59446 1.57637 1.38559 1.48303 1.49635 1.28456 1.06122 1.20905 0.92852 0.85349 1.02077 1.21473 0.99737 0.97581 0.97272 1.22566 0.91790 0.95093 0.94577 0.87779 1.23166 0.98704 0.95623 1.00958 1.21833 0.97198 0.96361 1.01568 1.21584 0.94928 0.93697 0.95529 0.90270 1.22407 1.01257 0.93002 0.82833 1.63469 1.17141 1.03243 1.45601 0.92727 0.98175 0.97919 0.91689 0.94016 0.83375 0.84452 0.92476 0.88580 0.89381 0.94734 0.90150 0.90124 0.89114 0.90582 0.90106 0.90229 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.56 13.29 21.45 0.28 -54.28 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.88 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.65 4.75 29.85 0.14 1.79 16 10 C -0.12 -4.86 4.72 30.59 0.14 -4.72 16 11 C 0.08 3.09 2.46 44.17 0.11 3.20 16 12 H 0.10 3.65 6.30 -2.38 -0.02 3.64 16 13 N -0.83 -31.44 8.97 -171.81 -1.54 -32.98 16 14 C 0.52 19.19 6.90 87.65 0.60 19.80 16 15 O -0.58 -24.98 15.72 -3.02 -0.05 -25.03 16 16 N -0.59 -16.98 2.88 -820.92 -2.36 -19.34 16 17 C 0.11 2.69 5.07 86.19 0.44 3.13 16 18 C -0.12 -2.52 4.95 29.67 0.15 -2.38 16 19 C 0.07 1.06 4.51 44.97 0.20 1.27 16 20 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 21 C -0.15 -1.63 5.92 31.67 0.19 -1.45 16 22 C -0.13 -1.62 5.81 29.93 0.17 -1.45 16 23 C 0.05 0.90 2.64 43.20 0.11 1.01 16 24 H 0.08 1.16 8.06 -2.39 -0.02 1.14 16 25 C 0.13 2.98 5.34 85.23 0.46 3.44 16 26 N -0.67 -11.89 6.85 -466.99 -3.20 -15.09 16 27 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.00 0.00 6.88 -2.39 -0.02 -0.02 16 29 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.06 2.51 7.20 -2.39 -0.02 2.50 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.35 13.26 7.57 -89.69 -0.68 12.58 16 33 H 0.34 13.18 8.56 -89.69 -0.77 12.41 16 34 H 0.06 1.64 7.15 -2.39 -0.02 1.63 16 35 H 0.10 1.83 4.22 -2.38 -0.01 1.82 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.88 6.56 -2.38 -0.02 0.87 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 1.00 7.11 -2.38 -0.02 0.98 16 42 H 0.08 2.12 5.96 -2.38 -0.01 2.11 16 43 H 0.08 1.78 7.87 -2.39 -0.02 1.76 16 44 H 0.35 4.85 8.92 -89.70 -0.80 4.05 16 Total: -1.00 -68.72 331.61 -2.65 -71.36 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -1.22 Total: 35.30 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 3.41 Total: -5.38 kcal Atomic # 7 Polarization: -114.87 SS G_CDS: -6.82 Total: -121.69 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.72 -2.65 -71.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327059574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.782 kcal (2) G-P(sol) polarization free energy of solvation -68.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds