Wall clock time and date at job start Tue Mar 31 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47199 * 54.99654 * 11 10 9 13 13 N 1.46903 * 109.46983 * 295.00076 * 11 10 9 14 14 C 1.50696 * 109.47146 * 175.00148 * 11 10 9 15 15 O 1.21279 * 120.00286 * 99.99924 * 14 11 10 16 16 N 1.34836 * 119.99730 * 279.99680 * 14 11 10 17 17 C 1.44822 * 120.34611 * 0.24165 * 16 14 11 18 18 C 1.51380 * 113.30159 * 269.86767 * 17 16 14 19 19 C 1.51243 * 114.33356 * 300.00479 * 18 17 16 20 20 H 1.09804 * 110.52821 * 175.96509 * 19 18 17 21 21 C 1.54042 * 108.54070 * 297.73435 * 19 18 17 22 22 C 1.53895 * 105.16589 * 95.24575 * 21 19 18 23 23 C 1.52037 * 105.78618 * 9.36907 * 22 21 19 24 24 H 1.09198 * 108.68404 * 124.96009 * 23 22 21 25 25 C 1.49450 * 120.15922 * 180.02562 * 16 14 11 26 26 N 1.48123 * 109.42152 * 6.55748 * 23 22 21 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 29 29 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 30 30 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 31 31 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 32 32 H 1.00901 * 110.99937 * 176.04870 * 13 11 10 33 33 H 1.00911 * 110.99831 * 299.99812 * 13 11 10 34 34 H 1.09305 * 108.44983 * 30.55461 * 17 16 14 35 35 H 1.08998 * 108.95867 * 148.14135 * 17 16 14 36 36 H 1.09312 * 108.49809 * 178.75615 * 18 17 16 37 37 H 1.09176 * 108.78349 * 61.62506 * 18 17 16 38 38 H 1.09355 * 110.67327 * 335.90126 * 21 19 18 39 39 H 1.09426 * 110.56813 * 214.47685 * 21 19 18 40 40 H 1.09111 * 110.54914 * 249.80796 * 22 21 19 41 41 H 1.09291 * 110.29115 * 128.42804 * 22 21 19 42 42 H 1.08990 * 109.56038 * 248.18599 * 25 16 14 43 43 H 1.08919 * 109.65683 * 8.59975 * 25 16 14 44 44 H 1.00905 * 111.15973 * 100.65132 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0068 -0.8432 13 7 0.7281 -5.1189 1.2538 14 6 2.4549 -6.1298 -0.1250 15 8 2.7864 -6.7536 0.8608 16 7 2.9583 -6.4587 -1.3318 17 6 2.5716 -5.7155 -2.5131 18 6 1.3532 -6.2859 -3.2071 19 6 1.5180 -7.7116 -3.6843 20 1 0.5784 -8.0855 -4.1120 21 6 2.6498 -7.7509 -4.7285 22 6 3.9121 -8.1413 -3.9395 23 6 3.4278 -8.5376 -2.5539 24 1 3.7890 -9.5438 -2.3316 25 6 3.9247 -7.5916 -1.4588 26 7 1.9468 -8.5533 -2.5356 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5571 0.8897 29 1 0.6240 -2.5568 -0.8903 30 1 2.8719 -3.6044 -0.8906 31 1 2.8719 -3.6044 0.8894 32 1 0.1637 -5.9553 1.2510 33 1 1.3477 -5.1034 2.0501 34 1 2.3554 -4.6854 -2.2184 35 1 3.4078 -5.7016 -3.2122 36 1 1.1187 -5.6562 -4.0694 37 1 0.5055 -6.2436 -2.5204 38 1 2.7782 -6.7705 -5.1957 39 1 2.4353 -8.4966 -5.5001 40 1 4.6002 -7.2970 -3.8755 41 1 4.4124 -8.9865 -4.4190 42 1 4.9074 -7.2046 -1.7278 43 1 3.9880 -8.1270 -0.5124 44 1 1.5914 -9.4943 -2.6160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327059575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:14 Heat of formation + Delta-G solvation = -37.889437 kcal Electronic energy + Delta-G solvation = -23504.194316 eV Core-core repulsion = 20262.602759 eV Total energy + Delta-G solvation = -3241.591557 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67932 -38.82945 -35.24236 -34.80929 -33.14970 -32.66424 -30.53251 -30.03167 -28.18229 -26.80876 -25.72286 -23.91382 -22.34346 -20.78574 -19.97223 -19.96099 -18.62969 -17.69285 -16.56850 -16.31117 -15.78133 -15.31314 -15.22672 -14.89077 -14.37817 -13.98561 -13.96025 -13.83334 -13.25669 -12.92567 -12.64560 -12.44810 -12.23341 -12.00651 -11.96310 -11.65241 -11.43177 -11.34956 -11.04988 -10.94680 -10.83650 -10.58522 -10.50167 -10.39164 -9.87034 -9.70527 -9.28399 -8.96047 -8.85558 -8.40556 -8.27575 -8.07571 -5.90341 -3.92347 2.99728 3.21250 3.38017 3.42579 3.45153 3.93294 4.36541 4.38809 4.52776 4.65242 4.79404 4.89144 5.00634 5.06379 5.13109 5.14946 5.32566 5.41744 5.45047 5.48629 5.54250 5.60295 5.63906 5.71910 5.77171 5.87559 5.90668 5.94290 5.96961 6.20944 6.49598 6.61997 6.70948 6.75969 7.14559 7.15637 7.52535 7.75729 7.80262 7.92295 8.00925 8.18063 8.51258 8.53391 9.15603 9.70489 11.20499 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.004302 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.324517 B = 6506.492890 C = 6952.953816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.097 4.097 11 C 0.079 3.921 12 H 0.096 0.904 13 N -0.808 5.808 14 C 0.492 3.508 15 O -0.562 6.562 16 N -0.586 5.586 17 C 0.109 3.891 18 C -0.129 4.129 19 C 0.076 3.924 20 H 0.081 0.919 21 C -0.146 4.146 22 C -0.138 4.138 23 C 0.057 3.943 24 H 0.070 0.930 25 C 0.125 3.875 26 N -0.651 5.651 27 H 0.259 0.741 28 H 0.035 0.965 29 H 0.012 0.988 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.333 0.667 33 H 0.346 0.654 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.247 -18.562 -10.648 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.069 0.931 9 C -0.005 4.005 10 C -0.135 4.135 11 C -0.037 4.037 12 H 0.114 0.886 13 N -0.335 5.335 14 C 0.280 3.720 15 O -0.441 6.441 16 N -0.318 5.318 17 C -0.015 4.015 18 C -0.168 4.168 19 C -0.034 4.034 20 H 0.099 0.901 21 C -0.185 4.185 22 C -0.177 4.177 23 C -0.054 4.054 24 H 0.089 0.911 25 C 0.002 3.998 26 N -0.278 5.278 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.145 0.855 33 H 0.159 0.841 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.792 -17.563 -9.780 20.666 hybrid contribution 1.256 -0.636 -0.892 1.667 sum 6.048 -18.199 -10.672 21.947 Atomic orbital electron populations 1.69968 1.05930 1.26455 1.50833 1.24981 0.94780 0.98962 0.95515 0.86729 0.79620 0.83521 0.78504 1.21355 1.20339 1.20411 1.21252 0.92835 0.91366 1.50596 0.93091 1.19002 0.93532 0.89770 0.98161 1.21699 0.98887 0.92469 1.00482 1.21820 0.93659 0.93347 0.94854 0.88610 1.59036 1.26936 1.44220 1.03337 1.22548 0.81609 0.85597 0.82274 1.90597 1.61483 1.54872 1.37097 1.47916 1.44636 1.32310 1.06982 1.20906 0.96979 0.96196 0.87433 1.21460 0.99477 0.94985 1.00885 1.22274 0.97319 0.94760 0.89007 0.90112 1.22880 0.94937 1.02434 0.98254 1.22358 0.98239 1.01861 0.95273 1.22288 0.89162 0.99281 0.94688 0.91135 1.22072 0.90816 0.87636 0.99266 1.62888 1.06549 1.15575 1.42754 0.93085 0.94690 0.96946 0.92835 0.92931 0.85538 0.84053 0.89059 0.91412 0.90663 0.91317 0.90432 0.91900 0.90686 0.91468 0.91809 0.89227 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.03 0.84 4.86 -27.89 -0.14 0.70 16 10 C -0.10 -2.03 4.46 -26.73 -0.12 -2.15 16 11 C 0.08 1.41 2.31 -68.86 -0.16 1.26 16 12 H 0.10 1.67 6.21 -51.93 -0.32 1.35 16 13 N -0.81 -14.61 8.44 -5.65 -0.05 -14.66 16 14 C 0.49 8.48 6.93 -10.96 -0.08 8.40 16 15 O -0.56 -11.15 15.67 5.56 0.09 -11.07 16 16 N -0.59 -8.19 2.37 -173.43 -0.41 -8.61 16 17 C 0.11 1.34 4.56 -5.76 -0.03 1.31 16 18 C -0.13 -1.38 4.96 -28.43 -0.14 -1.52 16 19 C 0.08 0.68 4.04 -67.05 -0.27 0.41 16 20 H 0.08 0.65 8.21 -51.47 -0.42 0.23 16 21 C -0.15 -1.09 5.99 -25.72 -0.15 -1.25 16 22 C -0.14 -1.05 5.76 -26.76 -0.15 -1.21 16 23 C 0.06 0.52 3.44 -67.53 -0.23 0.29 16 24 H 0.07 0.57 8.16 -51.82 -0.42 0.15 16 25 C 0.13 1.49 6.14 -2.40 -0.01 1.48 16 26 N -0.65 -6.47 6.31 -98.08 -0.62 -7.09 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.03 0.99 7.75 -51.92 -0.40 0.58 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 1.05 6.39 -51.93 -0.33 0.72 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.33 5.38 9.06 -39.29 -0.36 5.03 16 33 H 0.35 6.34 8.58 -39.29 -0.34 6.01 16 34 H 0.09 1.29 4.75 -51.76 -0.25 1.05 16 35 H 0.07 0.73 6.18 -51.93 -0.32 0.41 16 36 H 0.07 0.71 8.09 -51.75 -0.42 0.29 16 37 H 0.07 0.85 7.17 -51.83 -0.37 0.48 16 38 H 0.08 0.58 7.66 -51.73 -0.40 0.18 16 39 H 0.06 0.42 8.18 -51.69 -0.42 -0.01 16 40 H 0.07 0.59 6.77 -51.87 -0.35 0.24 16 41 H 0.07 0.44 8.17 -51.76 -0.42 0.01 16 42 H 0.06 0.68 7.69 -51.93 -0.40 0.28 16 43 H 0.09 1.23 7.04 -51.97 -0.37 0.87 16 44 H 0.33 2.82 8.94 -39.29 -0.35 2.47 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -32.64 332.27 -9.21 -41.85 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.05 Total: 9.86 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.89 Total: -5.82 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.34 Total: -56.62 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.64 -9.21 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327059575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.963 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds