Wall clock time and date at job start Tue Mar 31 2020 05:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00219 * 2 1 4 4 H 1.48494 * 109.47124 * 270.00322 * 3 2 1 5 5 H 1.48501 * 109.46792 * 29.99899 * 3 2 1 6 6 H 1.48497 * 109.47436 * 149.99928 * 3 2 1 7 7 C 1.37880 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99467 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00677 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47232 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46892 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47142 * 55.00090 * 11 10 9 13 13 N 1.46899 * 109.46953 * 294.99846 * 11 10 9 14 14 C 1.50701 * 109.46737 * 175.00060 * 11 10 9 15 15 O 1.21278 * 119.99929 * 99.99777 * 14 11 10 16 16 N 1.34778 * 119.99590 * 279.99400 * 14 11 10 17 17 C 1.47589 * 126.94339 * 0.03011 * 16 14 11 18 18 C 1.54295 * 107.22138 * 155.02450 * 17 16 14 19 19 C 1.53345 * 104.70787 * 1.96476 * 18 17 16 20 20 C 1.53357 * 111.48278 * 140.83035 * 19 18 17 21 21 C 1.55222 * 102.59195 * 100.98749 * 20 19 18 22 22 N 1.48646 * 103.39524 * 36.36073 * 21 20 19 23 23 C 1.48256 * 105.87059 * 321.52373 * 22 21 20 24 24 C 1.48638 * 127.07792 * 179.86791 * 16 14 11 25 25 H 0.96998 * 119.99906 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46568 * 59.99901 * 9 7 2 27 27 H 1.08997 * 109.46867 * 300.00526 * 9 7 2 28 28 H 1.08990 * 109.47006 * 59.99976 * 10 9 7 29 29 H 1.09003 * 109.46732 * 299.99799 * 10 9 7 30 30 H 1.00892 * 111.00332 * 176.05087 * 13 11 10 31 31 H 1.00903 * 111.00142 * 300.00296 * 13 11 10 32 32 H 1.09002 * 109.91845 * 35.57135 * 17 16 14 33 33 H 1.09002 * 109.91799 * 274.47171 * 17 16 14 34 34 H 1.08993 * 110.38604 * 120.77656 * 18 17 16 35 35 H 1.09002 * 110.38712 * 243.04320 * 18 17 16 36 36 H 1.08989 * 110.78803 * 219.26773 * 20 19 18 37 37 H 1.09011 * 110.78091 * 342.71685 * 20 19 18 38 38 H 1.08994 * 110.63680 * 277.88241 * 21 20 19 39 39 H 1.08996 * 110.76963 * 154.90214 * 21 20 19 40 40 H 1.00899 * 111.00540 * 82.06419 * 22 21 20 41 41 H 1.09005 * 110.03787 * 265.81955 * 23 22 21 42 42 H 1.08996 * 110.04151 * 144.37438 * 23 22 21 43 43 H 1.08992 * 110.53344 * 99.36508 * 24 16 14 44 44 H 1.08999 * 110.85956 * 336.35041 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 6 5.5516 -2.6365 -0.0022 12 1 5.9149 -2.0478 0.8401 13 7 6.0412 -2.0502 -1.2570 14 6 6.0539 -4.0520 0.1204 15 8 6.4279 -4.6504 -0.8659 16 7 6.0874 -4.6530 1.3264 17 6 5.6719 -4.0730 2.6184 18 6 5.2901 -5.2466 3.5443 19 6 5.5649 -6.5047 2.7117 20 6 6.1741 -7.6223 3.5672 21 6 4.9554 -8.5451 3.8362 22 7 4.1871 -8.4802 2.5653 23 6 4.2845 -7.0746 2.1040 24 6 6.5465 -6.0344 1.6268 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6804 0.8889 27 1 3.8745 -0.6800 -0.8911 28 1 3.6579 -3.1497 -0.8924 29 1 3.6585 -3.1509 0.8876 30 1 7.0477 -1.9796 -1.2546 31 1 5.7177 -2.5784 -2.0535 32 1 4.8115 -3.4198 2.4726 33 1 6.4964 -3.5090 3.0545 34 1 5.9108 -5.2409 4.4402 35 1 4.2354 -5.1902 3.8136 36 1 6.9478 -8.1546 3.0141 37 1 6.5702 -7.2225 4.5008 38 1 4.3597 -8.1629 4.6651 39 1 5.2804 -9.5659 4.0369 40 1 4.5693 -9.1132 1.8789 41 1 3.4213 -6.5068 2.4514 42 1 4.3405 -7.0415 1.0160 43 1 7.5669 -6.0234 2.0096 44 1 6.4753 -6.6679 0.7427 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328203836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:51 Heat of formation + Delta-G solvation = -36.928427 kcal Electronic energy + Delta-G solvation = -23000.224156 eV Core-core repulsion = 19758.674272 eV Total energy + Delta-G solvation = -3241.549884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79410 -39.11465 -36.25642 -35.36042 -32.76382 -31.68821 -30.50121 -29.64610 -29.34376 -27.10610 -25.34151 -23.32535 -22.75938 -22.07165 -20.19387 -19.56210 -19.03628 -17.24662 -16.94292 -16.66767 -15.86536 -15.62919 -15.39675 -14.89215 -14.42827 -14.10460 -14.06855 -13.82895 -13.37451 -13.32095 -12.94667 -12.59088 -12.37238 -12.31426 -12.16047 -11.92872 -11.70810 -11.62423 -11.17131 -10.99218 -10.94604 -10.85787 -10.74954 -10.36105 -9.97971 -9.71856 -9.59927 -9.11628 -8.93623 -8.70824 -8.51931 -8.40376 -5.99172 -3.96831 2.66645 2.92447 3.37457 3.43991 3.49173 3.91306 4.04058 4.17796 4.51326 4.52907 4.68620 4.76032 4.85421 4.92080 4.96825 5.04372 5.21496 5.25612 5.34862 5.38103 5.40536 5.44218 5.56956 5.58121 5.60686 5.67570 5.69174 5.85599 5.89631 5.91007 6.13575 6.31912 6.45051 6.48267 6.86843 7.06476 7.24842 7.37955 7.50747 7.56690 7.64859 7.86258 8.17531 8.58259 9.05548 9.63809 11.14309 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020143 B = 0.004312 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.709308 B = 6492.203602 C = 7204.086750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.069 0.931 9 C -0.003 4.003 10 C -0.087 4.087 11 C 0.079 3.921 12 H 0.097 0.903 13 N -0.811 5.811 14 C 0.504 3.496 15 O -0.554 6.554 16 N -0.619 5.619 17 C 0.093 3.907 18 C -0.117 4.117 19 C -0.103 4.103 20 C -0.142 4.142 21 C 0.043 3.957 22 N -0.675 5.675 23 C 0.057 3.943 24 C 0.117 3.883 25 H 0.262 0.738 26 H 0.012 0.988 27 H 0.029 0.971 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.335 0.665 31 H 0.350 0.650 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.336 0.664 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.418 -14.257 9.382 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.125 4.125 11 C -0.037 4.037 12 H 0.114 0.886 13 N -0.339 5.339 14 C 0.292 3.708 15 O -0.432 6.432 16 N -0.354 5.354 17 C -0.030 4.030 18 C -0.155 4.155 19 C -0.106 4.106 20 C -0.182 4.182 21 C -0.087 4.087 22 N -0.301 5.301 23 C -0.073 4.073 24 C -0.006 4.006 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.164 0.836 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.151 0.849 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 14.335 -13.697 9.221 21.866 hybrid contribution 1.867 0.050 -0.348 1.900 sum 16.202 -13.647 8.873 22.967 Atomic orbital electron populations 1.69922 1.06348 1.26809 1.51436 1.25006 0.94680 0.99175 0.94579 0.86746 0.80241 0.83477 0.78598 1.20286 1.21702 1.18926 1.21171 0.89690 0.94340 1.50696 0.91298 1.19477 0.96384 0.91090 0.97129 1.21474 0.87923 1.01570 1.01510 1.21839 0.99406 0.87511 0.94928 0.88559 1.59052 1.15364 1.56003 1.03448 1.22377 0.76837 0.90676 0.80901 1.90655 1.49519 1.66816 1.36186 1.49067 1.64303 1.14819 1.07191 1.22305 1.00879 0.96647 0.83177 1.22517 1.03112 0.92504 0.97408 1.22083 0.96738 0.95931 0.95815 1.23011 0.98761 0.96559 0.99862 1.23174 0.92392 0.99200 0.93888 1.62808 1.55512 1.05897 1.05924 1.22725 0.95876 0.88965 0.99710 1.22385 0.96717 0.83999 0.97545 0.92837 0.96960 0.95265 0.92244 0.92155 0.85341 0.83597 0.89246 0.91450 0.90344 0.89742 0.91174 0.90263 0.90025 0.90809 0.84888 0.89693 0.91223 0.91403 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 9 C 0.00 -0.08 3.93 -27.89 -0.11 -0.19 16 10 C -0.09 -1.69 4.65 -26.73 -0.12 -1.81 16 11 C 0.08 1.28 2.45 -68.86 -0.17 1.11 16 12 H 0.10 1.45 7.75 -51.93 -0.40 1.05 16 13 N -0.81 -12.99 8.44 -5.65 -0.05 -13.04 16 14 C 0.50 7.97 7.13 -10.98 -0.08 7.89 16 15 O -0.55 -10.26 16.49 5.56 0.09 -10.17 16 16 N -0.62 -7.93 3.32 -169.85 -0.56 -8.49 16 17 C 0.09 0.98 6.50 -2.77 -0.02 0.97 16 18 C -0.12 -1.01 6.14 -25.87 -0.16 -1.17 16 19 C -0.10 -0.92 0.79 -153.92 -0.12 -1.04 16 20 C -0.14 -0.98 6.19 -25.37 -0.16 -1.14 16 21 C 0.04 0.32 7.57 -1.68 -0.01 0.30 16 22 N -0.68 -6.38 7.53 -110.26 -0.83 -7.21 16 23 C 0.06 0.60 6.89 -3.20 -0.02 0.58 16 24 C 0.12 1.25 5.79 -2.51 -0.01 1.24 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 27 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.13 6.68 -51.93 -0.35 0.78 16 30 H 0.33 4.63 9.06 -39.30 -0.36 4.28 16 31 H 0.35 5.74 8.58 -39.29 -0.34 5.40 16 32 H 0.09 1.07 6.17 -51.93 -0.32 0.75 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.54 7.42 -51.93 -0.39 0.15 16 35 H 0.08 0.76 7.38 -51.93 -0.38 0.38 16 36 H 0.07 0.46 7.91 -51.94 -0.41 0.05 16 37 H 0.08 0.47 7.41 -51.92 -0.38 0.08 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.34 2.80 8.92 -39.29 -0.35 2.45 16 41 H 0.08 1.01 7.29 -51.93 -0.38 0.63 16 42 H 0.07 0.84 7.51 -51.93 -0.39 0.45 16 43 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 44 H 0.08 0.97 7.52 -51.93 -0.39 0.58 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -33.02 342.03 -8.79 -41.81 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.28 Total: 8.54 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -1.42 Total: -6.57 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.67 Total: -56.09 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.02 -8.79 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328203836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.878 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds