Wall clock time and date at job start Tue Mar 31 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99875 * 2 1 4 4 H 1.48506 * 109.47044 * 269.99593 * 3 2 1 5 5 H 1.48498 * 109.47317 * 30.00146 * 3 2 1 6 6 H 1.48505 * 109.46911 * 150.00352 * 3 2 1 7 7 C 1.37880 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99632 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00231 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47330 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47002 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47194 * 55.00551 * 11 10 9 13 13 N 1.46896 * 109.47174 * 294.99968 * 11 10 9 14 14 C 1.50701 * 109.46802 * 175.00339 * 11 10 9 15 15 O 1.21284 * 120.00213 * 99.99895 * 14 11 10 16 16 N 1.34778 * 120.00163 * 279.99726 * 14 11 10 17 17 C 1.47156 * 125.59529 * 359.97438 * 16 14 11 18 18 C 1.54629 * 107.33810 * 179.10110 * 17 16 14 19 19 C 1.53470 * 102.75071 * 339.33280 * 18 17 16 20 20 C 1.53500 * 111.80249 * 272.87955 * 19 18 17 21 21 C 1.55215 * 101.46304 * 204.13751 * 20 19 18 22 22 N 1.47996 * 104.99190 * 35.39327 * 21 20 19 23 23 C 1.47866 * 108.51237 * 336.19823 * 22 21 20 24 24 C 1.47752 * 125.60306 * 179.97438 * 16 14 11 25 25 H 0.97004 * 119.99434 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46712 * 59.99742 * 9 7 2 27 27 H 1.08997 * 109.47083 * 300.00557 * 9 7 2 28 28 H 1.09009 * 109.46830 * 60.00214 * 10 9 7 29 29 H 1.09005 * 109.47290 * 300.00403 * 10 9 7 30 30 H 1.00912 * 110.99975 * 176.04772 * 13 11 10 31 31 H 1.00903 * 111.00249 * 300.00164 * 13 11 10 32 32 H 1.08994 * 109.87185 * 59.66800 * 17 16 14 33 33 H 1.08992 * 109.87202 * 298.54009 * 17 16 14 34 34 H 1.09002 * 110.75656 * 221.01501 * 18 17 16 35 35 H 1.08997 * 110.75585 * 97.64674 * 18 17 16 36 36 H 1.08994 * 111.02645 * 322.18505 * 20 19 18 37 37 H 1.09001 * 111.02361 * 86.05879 * 20 19 18 38 38 H 1.08994 * 110.33547 * 276.50998 * 21 20 19 39 39 H 1.09006 * 110.33162 * 154.27312 * 21 20 19 40 40 H 1.00896 * 110.99777 * 213.96408 * 22 21 20 41 41 H 1.09000 * 109.99816 * 121.47924 * 23 22 21 42 42 H 1.08994 * 109.99702 * 242.82067 * 23 22 21 43 43 H 1.09001 * 110.39420 * 83.53718 * 24 16 14 44 44 H 1.09004 * 110.39530 * 321.13790 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6366 0.0014 11 6 5.5515 -2.6366 0.0014 12 1 5.9148 -2.0464 0.8427 13 7 6.0412 -2.0525 -1.2543 14 6 6.0537 -4.0519 0.1266 15 8 6.4278 -4.6520 -0.8588 16 7 6.0873 -4.6509 1.3335 17 6 5.6657 -4.0407 2.6045 18 6 5.8600 -5.1022 3.7120 19 6 5.8852 -6.4168 2.9205 20 6 4.4736 -6.9804 2.7061 21 6 4.7719 -8.4898 2.5013 22 7 5.9106 -8.7805 3.4008 23 6 6.6424 -7.5208 3.6541 24 6 6.5532 -6.0279 1.5977 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6797 0.8895 27 1 3.8745 -0.6809 -0.8904 28 1 3.6578 -3.1514 -0.8880 29 1 3.6584 -3.1495 0.8921 30 1 7.0478 -1.9820 -1.2520 31 1 5.7177 -2.5822 -2.0499 32 1 4.6160 -3.7530 2.5472 33 1 6.2804 -3.1663 2.8175 34 1 5.0240 -5.0883 4.4113 35 1 6.8042 -4.9475 4.2340 36 1 3.8509 -6.8207 3.5863 37 1 4.0108 -6.5487 1.8186 38 1 5.0485 -8.6841 1.4651 39 1 3.9052 -9.0886 2.7816 40 1 6.5194 -9.4780 2.9997 41 1 6.6642 -7.3109 4.7234 42 1 7.6588 -7.5960 3.2677 43 1 7.6383 -6.0487 1.6998 44 1 6.2330 -6.6971 0.7991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328203844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:55 Heat of formation + Delta-G solvation = -39.738885 kcal Electronic energy + Delta-G solvation = -22961.043828 eV Core-core repulsion = 19719.372073 eV Total energy + Delta-G solvation = -3241.671755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86685 -39.12310 -36.25343 -35.36636 -32.77362 -31.83754 -30.50700 -29.75874 -29.35088 -27.21981 -25.53473 -23.41377 -22.61361 -21.81364 -20.21802 -19.58247 -19.16840 -17.29212 -16.76071 -16.71602 -16.07381 -15.58043 -15.49061 -15.25755 -14.19276 -14.08014 -13.86801 -13.73366 -13.62803 -13.10082 -12.96996 -12.75606 -12.56584 -12.41886 -12.20798 -11.95005 -11.86790 -11.71561 -11.22035 -10.97286 -10.91424 -10.90055 -10.75049 -10.36828 -9.99433 -9.72293 -9.60855 -9.12794 -8.80736 -8.71281 -8.52271 -8.40745 -6.00373 -3.98004 2.66264 2.93583 3.36718 3.43261 3.48493 3.86996 4.01576 4.16970 4.31961 4.50423 4.67538 4.74268 4.84651 4.92012 4.96208 5.01913 5.18552 5.25092 5.33040 5.35879 5.40920 5.46790 5.52648 5.58177 5.64251 5.66816 5.72713 5.79818 5.90451 5.91191 6.14481 6.31510 6.46987 6.47441 6.85829 6.98605 7.23474 7.37137 7.47246 7.55726 7.64220 7.85255 8.17006 8.57010 9.04127 9.62670 11.13096 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021851 B = 0.004129 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.121645 B = 6780.312513 C = 7347.819640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.068 0.932 9 C -0.003 4.003 10 C -0.086 4.086 11 C 0.079 3.921 12 H 0.097 0.903 13 N -0.811 5.811 14 C 0.499 3.501 15 O -0.554 6.554 16 N -0.616 5.616 17 C 0.095 3.905 18 C -0.115 4.115 19 C -0.096 4.096 20 C -0.115 4.115 21 C 0.044 3.956 22 N -0.685 5.685 23 C 0.064 3.936 24 C 0.119 3.881 25 H 0.262 0.738 26 H 0.012 0.988 27 H 0.029 0.971 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.335 0.665 31 H 0.350 0.650 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.338 0.662 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.321 -13.850 8.691 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.124 4.124 11 C -0.037 4.037 12 H 0.115 0.885 13 N -0.339 5.339 14 C 0.287 3.713 15 O -0.432 6.432 16 N -0.351 5.351 17 C -0.028 4.028 18 C -0.153 4.153 19 C -0.097 4.097 20 C -0.153 4.153 21 C -0.085 4.085 22 N -0.314 5.314 23 C -0.066 4.066 24 C -0.004 4.004 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.164 0.836 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.154 0.846 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.559 -13.328 8.874 21.642 hybrid contribution 1.325 0.061 -0.956 1.636 sum 15.885 -13.267 7.918 22.159 Atomic orbital electron populations 1.69929 1.06350 1.26817 1.51441 1.25011 0.94691 0.99199 0.94567 0.86740 0.80245 0.83438 0.78604 1.20284 1.21688 1.18908 1.21168 0.89702 0.94321 1.50710 0.91339 1.19475 0.96365 0.91088 0.97143 1.21461 0.87961 1.01577 1.01442 1.21838 0.99392 0.87534 0.94907 0.88526 1.59056 1.15358 1.56021 1.03448 1.22407 0.77020 0.90782 0.81061 1.90655 1.49406 1.66699 1.36405 1.48726 1.64507 1.14430 1.07396 1.22247 1.01559 0.96312 0.82675 1.22468 1.03383 0.92525 0.96903 1.21829 0.96780 0.95875 0.95239 1.22547 0.95182 0.94362 1.03177 1.22941 0.94601 0.96346 0.94620 1.62035 1.11533 1.09600 1.48207 1.22371 0.95698 0.87849 1.00667 1.22010 0.97975 0.84263 0.96147 0.92835 0.96937 0.95258 0.92309 0.92210 0.85342 0.83614 0.89948 0.91011 0.89241 0.90297 0.89941 0.90213 0.93835 0.90067 0.84612 0.89934 0.92716 0.91768 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.05 13.96 55.43 0.77 -27.28 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 8 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 9 C 0.00 -0.08 3.93 -27.89 -0.11 -0.19 16 10 C -0.09 -1.68 4.77 -26.73 -0.13 -1.80 16 11 C 0.08 1.28 2.56 -68.87 -0.18 1.10 16 12 H 0.10 1.45 7.51 -51.93 -0.39 1.06 16 13 N -0.81 -12.99 8.44 -5.66 -0.05 -13.04 16 14 C 0.50 7.92 7.09 -10.98 -0.08 7.84 16 15 O -0.55 -10.31 16.53 5.55 0.09 -10.22 16 16 N -0.62 -7.92 3.34 -171.01 -0.57 -8.49 16 17 C 0.09 1.01 6.15 -2.83 -0.02 0.99 16 18 C -0.11 -0.93 5.85 -25.63 -0.15 -1.08 16 19 C -0.10 -0.84 0.61 -154.08 -0.09 -0.94 16 20 C -0.11 -1.10 5.96 -25.30 -0.15 -1.25 16 21 C 0.04 0.38 7.50 -2.05 -0.02 0.37 16 22 N -0.68 -5.64 7.42 -111.13 -0.82 -6.46 16 23 C 0.06 0.49 6.85 -3.47 -0.02 0.46 16 24 C 0.12 1.31 5.76 -3.25 -0.02 1.30 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 27 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 28 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.06 1.11 6.61 -51.93 -0.34 0.77 16 30 H 0.33 4.63 9.06 -39.29 -0.36 4.27 16 31 H 0.35 5.74 8.58 -39.29 -0.34 5.40 16 32 H 0.08 0.97 6.69 -51.93 -0.35 0.62 16 33 H 0.07 0.69 7.93 -51.93 -0.41 0.28 16 34 H 0.09 0.67 7.80 -51.93 -0.40 0.26 16 35 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 36 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 37 H 0.08 0.91 8.00 -51.93 -0.42 0.49 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.34 2.31 8.91 -39.29 -0.35 1.96 16 41 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 42 H 0.05 0.37 7.61 -51.93 -0.40 -0.02 16 43 H 0.06 0.67 7.78 -51.93 -0.40 0.26 16 44 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -33.00 343.36 -8.87 -41.87 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.40 Total: 7.65 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.39 Total: -6.49 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.67 Total: -55.27 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.00 -8.87 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328203844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.127 kcal (2) G-P(sol) polarization free energy of solvation -32.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds