Wall clock time and date at job start Tue Mar 31 2020 05:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 H 1.08994 * 109.47465 * 305.00017 * 11 10 9 13 13 N 1.46897 * 109.47150 * 65.00461 * 11 10 9 14 14 C 1.50707 * 109.47009 * 184.99986 * 11 10 9 15 15 O 1.21283 * 120.00024 * 260.00420 * 14 11 10 16 16 N 1.34775 * 119.99898 * 79.99625 * 14 11 10 17 17 C 1.47128 * 125.60972 * 0.03119 * 16 14 11 18 18 C 1.54579 * 107.33072 * 180.93184 * 17 16 14 19 19 C 1.53733 * 102.78148 * 20.90220 * 18 17 16 20 20 C 1.53225 * 111.50499 * 86.15189 * 19 18 17 21 21 C 1.55251 * 102.54223 * 101.21261 * 20 19 18 22 22 N 1.48661 * 103.41976 * 36.24691 * 21 20 19 23 23 C 1.48299 * 105.87930 * 321.61734 * 22 21 20 24 24 C 1.47705 * 125.60453 * 179.71795 * 16 14 11 25 25 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 27 27 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 28 28 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 29 29 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 30 30 H 1.00901 * 110.99977 * 296.03759 * 13 11 10 31 31 H 1.00896 * 111.00712 * 59.99346 * 13 11 10 32 32 H 1.08998 * 109.87458 * 300.37344 * 17 16 14 33 33 H 1.09007 * 109.87070 * 61.49953 * 17 16 14 34 34 H 1.09002 * 110.74954 * 139.22590 * 18 17 16 35 35 H 1.08999 * 110.74982 * 262.58376 * 18 17 16 36 36 H 1.08997 * 110.79450 * 219.47750 * 20 19 18 37 37 H 1.08998 * 110.78933 * 342.95096 * 20 19 18 38 38 H 1.09003 * 110.63102 * 277.76052 * 21 20 19 39 39 H 1.09001 * 110.76974 * 154.79989 * 21 20 19 40 40 H 1.00892 * 111.00152 * 82.17132 * 22 21 20 41 41 H 1.09004 * 110.05014 * 265.77507 * 23 22 21 42 42 H 1.08999 * 110.05248 * 144.29418 * 23 22 21 43 43 H 1.08996 * 110.39235 * 276.18399 * 24 16 14 44 44 H 1.09001 * 110.39124 * 38.57171 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 1 0.7886 -5.0068 0.8421 13 7 0.7284 -5.1189 -1.2548 14 6 2.4551 -6.1298 0.1239 15 8 2.7867 -6.7536 -0.8619 16 7 2.9584 -6.4585 1.3302 17 6 2.6425 -5.7889 2.6016 18 6 3.4665 -6.4875 3.7072 19 6 4.5971 -7.1624 2.9136 20 6 5.7721 -6.2056 2.6858 21 6 6.7938 -6.6644 3.7610 22 7 6.6157 -8.1398 3.7988 23 6 5.1597 -8.3768 3.6468 24 6 3.9130 -7.5543 1.5941 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5568 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6043 -0.8905 29 1 2.8721 -3.6042 0.8895 30 1 0.0235 -4.4009 -1.3311 31 1 1.3478 -5.1033 -2.0511 32 1 2.9175 -4.7357 2.5441 33 1 1.5781 -5.8847 2.8164 34 1 3.8697 -5.7568 4.4084 35 1 2.8627 -7.2312 4.2273 36 1 6.1830 -6.3291 1.6838 37 1 5.4685 -5.1727 2.8562 38 1 6.5562 -6.2238 4.7293 39 1 7.8103 -6.4076 3.4627 40 1 7.1341 -8.5857 3.0569 41 1 4.6922 -8.4714 4.6269 42 1 4.9872 -9.2798 3.0612 43 1 3.3837 -8.5007 1.7042 44 1 4.6473 -7.6199 0.7912 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328203845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:57 Heat of formation + Delta-G solvation = -43.348837 kcal Electronic energy + Delta-G solvation = -22892.973272 eV Core-core repulsion = 19651.144978 eV Total energy + Delta-G solvation = -3241.828294 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75101 -38.96266 -36.18183 -35.46214 -32.87091 -31.59336 -29.91359 -29.57907 -29.44071 -26.94572 -25.14778 -23.47285 -22.89646 -22.03649 -20.48304 -19.51735 -18.90919 -17.34108 -16.87172 -16.30674 -15.83790 -15.42522 -15.03354 -14.51341 -14.48888 -14.08682 -13.94490 -13.73136 -13.64804 -13.10012 -12.98775 -12.74285 -12.54250 -12.15829 -12.06296 -11.99328 -11.71262 -11.46255 -11.19495 -11.06321 -10.93325 -10.82020 -10.72598 -10.72244 -9.98668 -9.92546 -9.31566 -9.23541 -8.95794 -8.57542 -8.45616 -8.19089 -6.10533 -4.13917 2.91165 3.03455 3.26436 3.31612 3.33795 3.88411 4.05250 4.28072 4.37293 4.43852 4.81286 4.87589 4.89693 5.02783 5.11500 5.16022 5.22175 5.25580 5.36871 5.43789 5.50148 5.56934 5.57711 5.63862 5.68977 5.73494 5.75511 5.79952 5.93975 5.97429 6.26408 6.33597 6.38708 6.51661 6.84887 6.99950 7.41921 7.49526 7.59335 7.67646 7.86151 7.89710 8.28711 8.41729 8.91656 9.51007 11.00340 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018269 B = 0.004199 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.244169 B = 6666.560634 C = 7646.635894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.026 3.974 10 C -0.136 4.136 11 C 0.079 3.921 12 H 0.095 0.905 13 N -0.831 5.831 14 C 0.541 3.459 15 O -0.540 6.540 16 N -0.620 5.620 17 C 0.096 3.904 18 C -0.114 4.114 19 C -0.104 4.104 20 C -0.142 4.142 21 C 0.043 3.957 22 N -0.676 5.676 23 C 0.058 3.942 24 C 0.122 3.878 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.354 0.646 31 H 0.345 0.655 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.337 0.663 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.986 -14.595 8.952 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.176 4.176 11 C -0.036 4.036 12 H 0.113 0.887 13 N -0.363 5.363 14 C 0.331 3.669 15 O -0.416 6.416 16 N -0.356 5.356 17 C -0.027 4.027 18 C -0.152 4.152 19 C -0.106 4.106 20 C -0.181 4.181 21 C -0.087 4.087 22 N -0.302 5.302 23 C -0.072 4.072 24 C 0.000 4.000 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.152 0.848 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.774 -15.599 9.347 20.191 hybrid contribution 0.580 2.252 -1.136 2.588 sum 9.354 -13.347 8.212 18.250 Atomic orbital electron populations 1.69938 1.06014 1.26919 1.50297 1.25004 0.94861 0.99266 0.95090 0.86647 0.79607 0.83045 0.78661 1.20225 1.21177 1.20222 1.21128 0.92936 0.90891 1.51317 0.92833 1.19090 0.93670 0.91050 0.97333 1.22371 0.99897 0.93950 1.01360 1.21440 0.94523 0.92189 0.95437 0.88716 1.58742 1.18480 1.55908 1.03213 1.20627 0.80955 0.84423 0.80941 1.90634 1.60631 1.53979 1.36339 1.48530 1.46102 1.33853 1.07140 1.22199 0.99871 0.97717 0.82877 1.22565 0.95809 1.00054 0.96808 1.22116 0.96016 0.96894 0.95581 1.22971 0.95144 0.99982 0.99983 1.23201 0.98808 0.87838 0.98823 1.62836 1.07297 1.09586 1.50520 1.22584 0.88385 0.96147 1.00095 1.22111 0.91772 0.90312 0.95846 0.92799 0.96411 0.96366 0.92790 0.92595 0.83024 0.84162 0.90417 0.91069 0.89642 0.90280 0.91119 0.90074 0.90055 0.90712 0.84789 0.89860 0.91127 0.91605 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.03 0.62 4.74 -27.88 -0.13 0.49 16 10 C -0.14 -2.71 4.77 -26.73 -0.13 -2.83 16 11 C 0.08 1.40 2.62 -68.86 -0.18 1.22 16 12 H 0.09 1.60 7.51 -51.93 -0.39 1.21 16 13 N -0.83 -14.81 8.94 -5.66 -0.05 -14.86 16 14 C 0.54 9.49 7.10 -10.98 -0.08 9.41 16 15 O -0.54 -11.07 16.53 5.55 0.09 -10.98 16 16 N -0.62 -8.65 3.34 -170.79 -0.57 -9.22 16 17 C 0.10 1.11 6.13 -2.87 -0.02 1.09 16 18 C -0.11 -0.99 5.65 -25.52 -0.14 -1.13 16 19 C -0.10 -0.93 0.75 -153.84 -0.12 -1.04 16 20 C -0.14 -1.31 6.11 -25.42 -0.16 -1.47 16 21 C 0.04 0.34 7.57 -1.66 -0.01 0.33 16 22 N -0.68 -5.45 7.53 -110.28 -0.83 -6.28 16 23 C 0.06 0.45 6.88 -3.25 -0.02 0.43 16 24 C 0.12 1.42 5.75 -3.01 -0.02 1.40 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.07 6.61 -51.93 -0.34 0.73 16 30 H 0.35 6.26 7.55 -39.29 -0.30 5.96 16 31 H 0.35 6.23 8.58 -39.29 -0.34 5.89 16 32 H 0.08 0.97 6.68 -51.93 -0.35 0.63 16 33 H 0.07 0.78 7.93 -51.93 -0.41 0.37 16 34 H 0.08 0.68 7.95 -51.93 -0.41 0.26 16 35 H 0.08 0.59 7.91 -51.93 -0.41 0.18 16 36 H 0.07 0.72 7.66 -51.93 -0.40 0.32 16 37 H 0.08 0.81 7.79 -51.93 -0.40 0.41 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.34 2.39 8.92 -39.30 -0.35 2.04 16 41 H 0.08 0.63 7.62 -51.93 -0.40 0.23 16 42 H 0.07 0.50 7.61 -51.93 -0.40 0.11 16 43 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 44 H 0.07 0.95 7.64 -51.93 -0.40 0.56 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -31.33 344.47 -9.16 -40.48 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.29 Total: 9.88 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.41 Total: -5.18 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.71 Total: -55.51 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.33 -9.16 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328203845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.865 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds