Wall clock time and date at job start Tue Mar 31 2020 05:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00006 * 2 1 4 4 N 1.46509 * 109.47005 * 179.97438 * 3 2 1 5 5 N 1.40076 * 126.03825 * 269.97633 * 4 3 2 6 6 C 1.30842 * 108.20657 * 179.73880 * 5 4 3 7 7 C 1.39872 * 108.19764 * 0.44422 * 6 5 4 8 8 C 1.50703 * 126.03910 * 179.81755 * 7 6 5 9 9 C 1.34951 * 126.03135 * 90.00695 * 4 3 2 10 10 C 1.50693 * 126.13128 * 359.95187 * 9 4 3 11 11 N 1.46907 * 109.47101 * 90.00415 * 10 9 4 12 12 C 1.46900 * 110.99855 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46467 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47329 * 299.99514 * 13 12 11 15 15 C 1.52988 * 109.47559 * 60.00124 * 13 12 11 16 16 C 1.50702 * 109.46566 * 179.97438 * 13 12 11 17 17 H 1.08004 * 120.00402 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99779 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00198 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00008 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46922 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47184 * 120.00129 * 20 18 16 23 23 H 1.48505 * 109.47183 * 240.00353 * 20 18 16 24 24 H 1.08998 * 109.47296 * 59.99484 * 1 2 3 25 25 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46832 * 299.99555 * 1 2 3 27 27 H 1.09001 * 109.47476 * 60.00650 * 3 2 1 28 28 H 1.09002 * 109.47892 * 300.00121 * 3 2 1 29 29 H 1.07999 * 125.90328 * 180.25854 * 6 5 4 30 30 H 1.09002 * 109.47152 * 269.68807 * 8 7 6 31 31 H 1.09001 * 109.46980 * 149.68908 * 8 7 6 32 32 H 1.09004 * 109.47113 * 29.68888 * 8 7 6 33 33 H 1.09000 * 109.47452 * 210.00342 * 10 9 4 34 34 H 1.09007 * 109.47440 * 330.00669 * 10 9 4 35 35 H 1.00906 * 110.99691 * 303.95596 * 11 10 9 36 36 H 1.08997 * 109.46781 * 299.99529 * 12 11 10 37 37 H 1.08998 * 109.47141 * 60.00267 * 12 11 10 38 38 H 1.09002 * 109.47133 * 60.00318 * 14 13 12 39 39 H 1.08997 * 109.47791 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.47218 * 300.01033 * 14 13 12 41 41 H 1.08997 * 109.47757 * 59.99446 * 15 13 12 42 42 H 1.09003 * 109.47481 * 179.97438 * 15 13 12 43 43 H 1.09003 * 109.47400 * 299.99559 * 15 13 12 44 44 H 0.96999 * 120.00495 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4707 1.1897 0.0006 5 7 4.2918 1.1252 1.1337 6 6 5.5332 1.0210 0.7335 7 6 5.5431 1.0259 -0.6652 8 6 6.7640 0.9293 -1.5434 9 6 4.2625 1.1269 -1.0904 10 6 3.8028 1.1622 -2.5251 11 7 3.7620 2.5545 -2.9920 12 6 3.3166 2.6281 -4.3899 13 6 3.2876 4.0902 -4.8396 14 6 2.3195 4.8771 -3.9538 15 6 4.6904 4.6888 -4.7191 16 6 2.8313 4.1657 -6.2738 17 1 2.5868 3.2612 -6.8111 18 6 2.7258 5.3894 -6.9003 19 7 3.0239 6.4908 -6.2463 20 14 2.1608 5.4829 -8.6783 21 1 1.8897 4.1133 -9.1842 22 1 0.9206 6.2954 -8.7616 23 1 3.2226 6.1144 -9.5026 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 6.4005 0.9472 1.3727 30 1 7.1392 1.9305 -1.7555 31 1 6.5007 0.4344 -2.4783 32 1 7.5350 0.3531 -1.0318 33 1 4.4964 0.5920 -3.1430 34 1 2.8070 0.7251 -2.5985 35 1 3.1754 3.1188 -2.3957 36 1 4.0066 2.0679 -5.0210 37 1 2.3174 2.2012 -4.4758 38 1 2.6500 4.8225 -2.9165 39 1 2.2985 5.9187 -4.2744 40 1 1.3201 4.4506 -4.0396 41 1 5.3801 4.1283 -5.3501 42 1 4.6698 5.7304 -5.0399 43 1 5.0209 4.6343 -3.6819 44 1 2.9501 7.3517 -6.6870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328761004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:44 Heat of formation + Delta-G solvation = 31.881445 kcal Electronic energy + Delta-G solvation = -22793.822461 eV Core-core repulsion = 19555.256397 eV Total energy + Delta-G solvation = -3238.566064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26644 -38.08638 -37.03694 -34.29240 -33.02855 -31.78787 -30.43310 -28.19738 -26.72921 -25.63056 -25.43229 -25.17504 -24.66574 -23.00414 -20.84525 -19.44023 -18.49140 -17.12882 -16.88157 -16.03971 -15.95384 -15.39359 -14.77442 -14.73612 -14.54678 -13.80364 -13.66113 -13.28902 -13.19644 -12.77535 -12.57230 -12.49510 -12.34328 -12.15075 -11.89115 -11.70747 -11.51363 -11.15072 -11.05007 -10.68364 -10.60351 -10.50372 -10.23100 -10.13012 -10.09166 -9.44395 -9.41211 -9.14621 -8.66679 -8.33244 -8.20266 -7.83205 -5.94689 -4.05346 1.77814 2.30053 2.89382 3.27954 3.36717 3.39781 3.72890 4.40105 4.40569 4.63365 4.71256 4.93967 4.98447 5.02502 5.07790 5.26019 5.31053 5.35313 5.45274 5.61786 5.69653 5.97794 6.00800 6.23890 6.25052 6.27787 6.40254 6.56383 6.64580 6.79625 6.81585 7.00385 7.09791 7.10330 7.34676 7.40750 7.61650 7.71261 7.75791 7.78951 7.81696 8.15669 8.30487 8.51306 8.96163 9.60024 11.05847 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019785 B = 0.004207 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.901633 B = 6653.452778 C = 7488.183247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.406 6.406 3 C 0.310 3.690 4 N -0.371 5.371 5 N -0.293 5.293 6 C 0.053 3.947 7 C -0.220 4.220 8 C -0.068 4.068 9 C 0.105 3.895 10 C 0.118 3.882 11 N -0.675 5.675 12 C 0.075 3.925 13 C 0.069 3.931 14 C -0.133 4.133 15 C -0.119 4.119 16 C -0.507 4.507 17 H 0.053 0.947 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.888 3.112 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.284 1.284 24 H 0.049 0.951 25 H 0.092 0.908 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.182 0.818 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.034 0.966 35 H 0.335 0.665 36 H 0.061 0.939 37 H 0.014 0.986 38 H 0.009 0.991 39 H 0.084 0.916 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.074 0.926 43 H 0.020 0.980 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.428 -10.337 11.581 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.324 6.324 3 C 0.150 3.850 4 N -0.158 5.158 5 N -0.113 5.113 6 C -0.134 4.134 7 C -0.232 4.232 8 C -0.126 4.126 9 C -0.020 4.020 10 C -0.013 4.013 11 N -0.308 5.308 12 C -0.053 4.053 13 C 0.069 3.931 14 C -0.190 4.190 15 C -0.177 4.177 16 C -0.545 4.545 17 H 0.071 0.929 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.716 3.284 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.211 1.211 24 H 0.067 0.933 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.199 0.801 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.052 0.948 35 H 0.154 0.846 36 H 0.079 0.921 37 H 0.032 0.968 38 H 0.028 0.972 39 H 0.103 0.897 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.092 0.908 43 H 0.039 0.961 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.610 -10.220 12.382 16.066 hybrid contribution -1.048 0.029 -1.506 1.835 sum -1.658 -10.191 10.876 14.996 Atomic orbital electron populations 1.22732 0.78822 1.03554 1.00638 1.87863 1.20938 1.28125 1.95496 1.22161 0.75144 0.85211 1.02528 1.48254 1.05139 1.58548 1.03819 1.77302 1.01841 1.24210 1.07950 1.23796 0.95155 0.99773 0.94651 1.19883 0.94464 1.14995 0.93813 1.20044 0.93192 1.01914 0.97457 1.20905 0.90883 1.00178 0.90068 1.20532 0.99705 0.93120 0.87931 1.60650 1.58639 1.06439 1.05051 1.22219 0.96161 1.01095 0.85791 1.18096 0.93321 0.87704 0.94012 1.21844 0.97170 1.04654 0.95364 1.21631 0.96250 1.02802 0.96971 1.21126 1.44543 0.92523 0.96341 0.92907 1.24884 0.95264 0.95821 0.97577 1.69841 1.48827 0.97600 1.36006 0.86604 0.78291 0.77971 0.85487 1.19942 1.21200 1.21064 0.93268 0.88918 0.93447 0.89604 0.89860 0.80063 0.91517 0.92099 0.92442 0.88643 0.94812 0.84611 0.92082 0.96760 0.97234 0.89709 0.96288 0.96190 0.90768 0.96061 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 11.01 101.05 1.11 1.44 16 2 O -0.41 -5.18 10.93 -35.23 -0.39 -5.56 16 3 C 0.31 3.88 6.87 59.85 0.41 4.29 16 4 N -0.37 -5.60 3.88 -61.89 -0.24 -5.84 16 5 N -0.29 -4.57 12.58 30.63 0.39 -4.19 16 6 C 0.05 0.73 11.96 -17.36 -0.21 0.52 16 7 C -0.22 -3.14 6.10 -105.05 -0.64 -3.78 16 8 C -0.07 -0.82 10.16 36.01 0.37 -0.46 16 9 C 0.10 1.59 6.44 -82.26 -0.53 1.06 16 10 C 0.12 1.76 5.48 -4.98 -0.03 1.73 16 11 N -0.68 -11.66 5.70 -115.05 -0.66 -12.31 16 12 C 0.08 1.50 4.59 -3.82 -0.02 1.48 16 13 C 0.07 1.62 0.57 -155.66 -0.09 1.53 16 14 C -0.13 -3.03 7.92 37.16 0.29 -2.74 16 15 C -0.12 -2.84 8.09 37.15 0.30 -2.54 16 16 C -0.51 -13.27 8.01 -34.44 -0.28 -13.54 16 17 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 19 N -0.88 -24.06 9.35 55.43 0.52 -23.54 16 20 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 0.96 7.66 -51.93 -0.40 0.56 16 29 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.73 7.15 -51.93 -0.37 0.36 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.37 7.15 -51.93 -0.37 1.00 16 34 H 0.03 0.49 7.72 -51.93 -0.40 0.09 16 35 H 0.34 5.83 6.76 -39.29 -0.27 5.57 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 39 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.96 6.07 -51.93 -0.32 1.64 16 43 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 44 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -29.77 353.94 -6.82 -36.60 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.36 Total: 3.16 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 0.60 Total: -9.34 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.01 Total: -45.88 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.39 Total: -5.56 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.77 -6.82 -36.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328761004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.477 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds