Wall clock time and date at job start Tue Mar 31 2020 05:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00006 * 2 1 4 4 N 1.46509 * 109.47005 * 179.97438 * 3 2 1 5 5 N 1.40076 * 126.03825 * 269.97633 * 4 3 2 6 6 C 1.30842 * 108.20657 * 179.73880 * 5 4 3 7 7 C 1.39872 * 108.19764 * 0.44422 * 6 5 4 8 8 C 1.50703 * 126.03910 * 179.81755 * 7 6 5 9 9 C 1.34951 * 126.03135 * 90.00695 * 4 3 2 10 10 C 1.50693 * 126.13128 * 359.95187 * 9 4 3 11 11 N 1.46907 * 109.47101 * 90.00415 * 10 9 4 12 12 C 1.46900 * 110.99855 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46467 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47329 * 299.99514 * 13 12 11 15 15 C 1.52988 * 109.47559 * 60.00124 * 13 12 11 16 16 C 1.50702 * 109.46566 * 179.97438 * 13 12 11 17 17 H 1.08004 * 120.00402 * 359.97438 * 16 13 12 18 18 C 1.37880 * 119.99779 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00198 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 120.00008 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46922 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47184 * 120.00129 * 20 18 16 23 23 H 1.48505 * 109.47183 * 240.00353 * 20 18 16 24 24 H 1.08998 * 109.47296 * 59.99484 * 1 2 3 25 25 H 1.08998 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46832 * 299.99555 * 1 2 3 27 27 H 1.09001 * 109.47476 * 60.00650 * 3 2 1 28 28 H 1.09002 * 109.47892 * 300.00121 * 3 2 1 29 29 H 1.07999 * 125.90328 * 180.25854 * 6 5 4 30 30 H 1.09002 * 109.47152 * 269.68807 * 8 7 6 31 31 H 1.09001 * 109.46980 * 149.68908 * 8 7 6 32 32 H 1.09004 * 109.47113 * 29.68888 * 8 7 6 33 33 H 1.09000 * 109.47452 * 210.00342 * 10 9 4 34 34 H 1.09007 * 109.47440 * 330.00669 * 10 9 4 35 35 H 1.00906 * 110.99691 * 303.95596 * 11 10 9 36 36 H 1.08997 * 109.46781 * 299.99529 * 12 11 10 37 37 H 1.08998 * 109.47141 * 60.00267 * 12 11 10 38 38 H 1.09002 * 109.47133 * 60.00318 * 14 13 12 39 39 H 1.08997 * 109.47791 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.47218 * 300.01033 * 14 13 12 41 41 H 1.08997 * 109.47757 * 59.99446 * 15 13 12 42 42 H 1.09003 * 109.47481 * 179.97438 * 15 13 12 43 43 H 1.09003 * 109.47400 * 299.99559 * 15 13 12 44 44 H 0.96999 * 120.00495 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 7 3.4707 1.1897 0.0006 5 7 4.2918 1.1252 1.1337 6 6 5.5332 1.0210 0.7335 7 6 5.5431 1.0259 -0.6652 8 6 6.7640 0.9293 -1.5434 9 6 4.2625 1.1269 -1.0904 10 6 3.8028 1.1622 -2.5251 11 7 3.7620 2.5545 -2.9920 12 6 3.3166 2.6281 -4.3899 13 6 3.2876 4.0902 -4.8396 14 6 2.3195 4.8771 -3.9538 15 6 4.6904 4.6888 -4.7191 16 6 2.8313 4.1657 -6.2738 17 1 2.5868 3.2612 -6.8111 18 6 2.7258 5.3894 -6.9003 19 7 3.0239 6.4908 -6.2463 20 14 2.1608 5.4829 -8.6783 21 1 1.8897 4.1133 -9.1842 22 1 0.9206 6.2954 -8.7616 23 1 3.2226 6.1144 -9.5026 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 6.4005 0.9472 1.3727 30 1 7.1392 1.9305 -1.7555 31 1 6.5007 0.4344 -2.4783 32 1 7.5350 0.3531 -1.0318 33 1 4.4964 0.5920 -3.1430 34 1 2.8070 0.7251 -2.5985 35 1 3.1754 3.1188 -2.3957 36 1 4.0066 2.0679 -5.0210 37 1 2.3174 2.2012 -4.4758 38 1 2.6500 4.8225 -2.9165 39 1 2.2985 5.9187 -4.2744 40 1 1.3201 4.4506 -4.0396 41 1 5.3801 4.1283 -5.3501 42 1 4.6698 5.7304 -5.0399 43 1 5.0209 4.6343 -3.6819 44 1 2.9501 7.3517 -6.6870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328761004.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:44 Heat of formation + Delta-G solvation = 12.372755 kcal Electronic energy + Delta-G solvation = -22794.668421 eV Core-core repulsion = 19555.256397 eV Total energy + Delta-G solvation = -3239.412025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.32765 -38.95527 -38.68490 -35.87009 -34.02214 -33.39557 -31.88731 -29.20461 -27.63332 -27.50666 -27.22631 -26.59704 -25.66306 -24.50446 -21.86679 -20.61944 -20.23214 -18.17525 -17.94237 -17.67591 -16.97000 -16.87531 -16.34961 -15.97758 -15.64779 -15.20102 -14.82384 -14.59640 -14.36899 -14.16745 -13.89383 -13.69407 -13.55134 -13.44338 -13.13424 -13.02284 -12.85899 -12.62022 -12.52658 -12.49214 -12.33453 -12.11046 -12.05609 -11.56433 -11.30473 -11.00577 -10.95582 -10.59306 -10.45866 -10.33300 -9.34892 -9.18827 -7.95337 -6.12001 0.70698 1.31834 1.42444 1.46596 1.55183 1.84346 2.47919 2.87553 3.27434 3.37771 3.46731 3.68885 3.85579 4.01821 4.21039 4.37728 4.43700 4.45403 4.49421 4.58148 4.63414 4.66466 4.75949 4.87214 4.97704 5.02410 5.06648 5.17108 5.28745 5.31292 5.37356 5.44887 5.55291 5.67427 5.71923 5.78162 5.83713 6.05501 6.14169 6.21453 6.32833 6.44581 6.55877 6.70747 6.97594 7.55924 9.02961 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019785 B = 0.004207 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.901633 B = 6653.452778 C = 7488.183247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.430 6.430 3 C 0.305 3.695 4 N -0.379 5.379 5 N -0.320 5.320 6 C 0.053 3.947 7 C -0.228 4.228 8 C -0.065 4.065 9 C 0.087 3.913 10 C 0.127 3.873 11 N -0.675 5.675 12 C 0.091 3.909 13 C 0.060 3.940 14 C -0.121 4.121 15 C -0.105 4.105 16 C -0.522 4.522 17 H 0.047 0.953 18 C 0.023 3.977 19 N -0.904 5.904 20 Si 0.943 3.057 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.214 0.786 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.039 0.961 35 H 0.335 0.665 36 H 0.057 0.943 37 H 0.015 0.985 38 H 0.029 0.971 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.013 0.987 42 H 0.046 0.954 43 H 0.031 0.969 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -11.349 12.032 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.349 6.349 3 C 0.145 3.855 4 N -0.167 5.167 5 N -0.140 5.140 6 C -0.133 4.133 7 C -0.240 4.240 8 C -0.123 4.123 9 C -0.038 4.038 10 C -0.003 4.003 11 N -0.307 5.307 12 C -0.038 4.038 13 C 0.060 3.940 14 C -0.179 4.179 15 C -0.162 4.162 16 C -0.561 4.561 17 H 0.066 0.934 18 C -0.176 4.176 19 N -0.543 5.543 20 Si 0.770 3.230 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.074 0.926 25 H 0.123 0.877 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.231 0.769 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.057 0.943 35 H 0.154 0.846 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.039 0.961 41 H 0.032 0.968 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.607 -11.244 12.839 17.077 hybrid contribution -1.054 0.318 -1.597 1.940 sum -1.662 -10.926 11.242 15.765 Atomic orbital electron populations 1.22966 0.76849 1.04753 1.01722 1.87826 1.23124 1.28261 1.95694 1.22345 0.74268 0.85468 1.03395 1.48487 1.05998 1.58576 1.03590 1.77254 1.02779 1.25179 1.08746 1.24356 0.95545 0.98482 0.94929 1.20260 0.94843 1.14360 0.94492 1.20067 0.93010 1.01871 0.97356 1.20998 0.91549 1.01205 0.90046 1.20449 1.00165 0.91574 0.88162 1.60549 1.58347 1.08102 1.03718 1.21875 0.96249 0.98439 0.87223 1.18142 0.92807 0.90025 0.93071 1.21669 0.97279 1.02604 0.96348 1.21455 0.96648 1.00877 0.97262 1.21447 1.44468 0.92315 0.97877 0.93433 1.25519 0.95592 0.95721 1.00796 1.69977 1.49441 0.97800 1.37107 0.85743 0.77697 0.77913 0.81631 1.19509 1.21064 1.21117 0.92563 0.87719 0.91962 0.88465 0.89229 0.76925 0.92214 0.92228 0.90079 0.88034 0.94322 0.84646 0.92404 0.96665 0.95230 0.92649 0.96120 0.96783 0.93532 0.94967 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.43 -10.47 10.93 -148.98 -1.63 -12.10 16 3 C 0.31 7.29 6.87 127.77 0.88 8.16 16 4 N -0.38 -11.00 3.88 -450.20 -1.75 -12.75 16 5 N -0.32 -9.54 12.58 -57.02 -0.72 -10.26 16 6 C 0.05 1.36 11.96 85.24 1.02 2.38 16 7 C -0.23 -6.09 6.10 -20.14 -0.12 -6.22 16 8 C -0.07 -1.44 10.16 71.24 0.72 -0.72 16 9 C 0.09 2.52 6.44 41.40 0.27 2.79 16 10 C 0.13 3.60 5.48 85.55 0.47 4.07 16 11 N -0.67 -22.32 5.70 -517.92 -2.95 -25.27 16 12 C 0.09 3.50 4.59 86.30 0.40 3.89 16 13 C 0.06 2.78 0.57 -52.93 -0.03 2.75 16 14 C -0.12 -5.48 7.92 71.98 0.57 -4.91 16 15 C -0.10 -4.97 8.09 71.98 0.58 -4.39 16 16 C -0.52 -27.21 8.01 25.60 0.21 -27.01 16 17 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 18 C 0.02 1.20 5.15 84.66 0.44 1.64 16 19 N -0.90 -49.60 9.35 21.45 0.20 -49.39 16 20 Si 0.94 42.42 29.54 68.60 2.03 44.44 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.09 1.96 7.66 -2.39 -0.02 1.94 16 29 H 0.21 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.32 7.15 -2.39 -0.02 1.30 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.10 2.75 7.15 -2.39 -0.02 2.73 16 34 H 0.04 1.07 7.72 -2.38 -0.02 1.05 16 35 H 0.33 11.14 6.76 -89.69 -0.61 10.53 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.03 1.18 6.57 -2.39 -0.02 1.16 16 39 H 0.05 2.85 6.07 -2.39 -0.01 2.83 16 40 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.05 2.46 6.07 -2.39 -0.01 2.45 16 43 H 0.03 1.41 7.60 -2.39 -0.02 1.39 16 44 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -62.46 353.94 2.19 -60.27 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.37 Total: 20.87 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 6.64 Total: -15.81 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -5.22 Total: -97.67 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -1.63 Total: -12.10 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -62.46 2.19 -60.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328761004.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.638 kcal (2) G-P(sol) polarization free energy of solvation -62.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds