Wall clock time and date at job start Tue Mar 31 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99865 * 2 1 4 4 H 1.48499 * 109.46834 * 240.00332 * 3 2 1 5 5 H 1.48497 * 109.46993 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47049 * 120.00080 * 3 2 1 7 7 C 1.38813 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99805 * 162.49347 * 7 2 1 9 9 N 1.36932 * 119.99981 * 342.77441 * 7 2 1 10 10 C 1.46923 * 120.63102 * 332.16162 * 9 7 2 11 11 C 1.52761 * 109.01099 * 233.58968 * 10 9 7 12 12 C 1.53046 * 109.38012 * 305.58649 * 11 10 9 13 13 N 1.46901 * 109.45461 * 181.25895 * 12 11 10 14 14 C 1.46896 * 110.99779 * 84.93845 * 13 12 11 15 15 H 1.09000 * 109.22031 * 324.38735 * 14 13 12 16 16 C 1.51797 * 109.22303 * 204.99682 * 14 13 12 17 17 C 1.51780 * 113.81187 * 172.86622 * 16 14 13 18 18 C 1.52988 * 110.88221 * 67.00579 * 17 16 14 19 19 N 1.47203 * 108.66016 * 273.53010 * 18 17 16 20 20 C 1.33371 * 120.42315 * 71.95908 * 19 18 17 21 21 O 1.21288 * 119.88487 * 179.70850 * 20 19 18 22 22 C 1.51420 * 120.22324 * 359.71387 * 20 19 18 23 23 C 1.53045 * 109.53515 * 61.24568 * 12 11 10 24 24 C 1.46930 * 120.62864 * 152.45065 * 9 7 2 25 25 H 0.96994 * 119.99759 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.58795 * 353.42479 * 10 9 7 27 27 H 1.09009 * 109.58495 * 113.84718 * 10 9 7 28 28 H 1.08998 * 109.56147 * 185.55821 * 11 10 9 29 29 H 1.08993 * 109.38655 * 65.51753 * 11 10 9 30 30 H 1.08998 * 109.45197 * 301.22961 * 12 11 10 31 31 H 1.00900 * 111.00006 * 208.88658 * 13 12 11 32 32 H 1.08999 * 108.61374 * 293.98673 * 16 14 13 33 33 H 1.09001 * 108.61326 * 51.88776 * 16 14 13 34 34 H 1.09000 * 109.19402 * 187.36285 * 17 16 14 35 35 H 1.08999 * 109.19479 * 306.68707 * 17 16 14 36 36 H 1.09000 * 109.60878 * 33.28298 * 18 17 16 37 37 H 1.08994 * 109.60602 * 153.78140 * 18 17 16 38 38 H 0.96991 * 119.78346 * 251.98221 * 19 18 17 39 39 H 1.09001 * 109.63309 * 169.06120 * 22 20 19 40 40 H 1.09000 * 109.63243 * 48.47040 * 22 20 19 41 41 H 1.08997 * 109.49353 * 178.68096 * 23 12 11 42 42 H 1.08994 * 109.52924 * 58.59580 * 23 12 11 43 43 H 1.09004 * 109.58262 * 246.14939 * 24 9 7 44 44 H 1.09000 * 109.58665 * 6.43418 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0529 -1.2239 -0.2808 9 7 1.3717 -2.3613 0.3522 10 6 0.2276 -2.3357 1.2736 11 6 0.4939 -3.3041 2.4246 12 6 0.8149 -4.6895 1.8588 13 7 1.0416 -5.6292 2.9649 14 6 -0.2275 -6.1886 3.4490 15 1 -1.0021 -5.4239 3.3907 16 6 -0.0630 -6.6241 4.8938 17 6 -1.3582 -7.0611 5.5534 18 6 -1.8853 -8.3499 4.9195 19 7 -2.7035 -7.9979 3.7475 20 6 -2.1278 -7.5417 2.6343 21 8 -2.8109 -7.2597 1.6726 22 6 -0.6243 -7.3749 2.5670 23 6 2.0736 -4.6091 0.9919 24 6 1.8217 -3.6549 -0.1797 25 1 -0.4849 0.8400 -0.0004 26 1 0.0987 -1.3279 1.6683 27 1 -0.6749 -2.6412 0.7440 28 1 -0.3891 -3.3666 3.0607 29 1 1.3399 -2.9455 3.0108 30 1 -0.0219 -5.0368 1.2529 31 1 1.6790 -6.3621 2.6918 32 1 0.6426 -7.4542 4.9287 33 1 0.3516 -5.7921 5.4629 34 1 -1.1802 -7.2308 6.6152 35 1 -2.1033 -6.2741 5.4363 36 1 -1.0474 -8.9729 4.6067 37 1 -2.4959 -8.8901 5.6428 38 1 -3.6675 -8.0981 3.7853 39 1 -0.3229 -7.1827 1.5373 40 1 -0.1387 -8.2803 2.9308 41 1 2.3149 -5.6004 0.6084 42 1 2.9053 -4.2382 1.5908 43 1 1.0518 -4.0701 -0.8302 44 1 2.7429 -3.5167 -0.7458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330626378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:57 Heat of formation + Delta-G solvation = -23.782629 kcal Electronic energy + Delta-G solvation = -23175.867751 eV Core-core repulsion = 19934.887912 eV Total energy + Delta-G solvation = -3240.979840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43705 -38.18930 -36.83870 -35.36444 -33.12731 -31.79861 -30.53971 -29.85534 -28.41746 -26.71088 -24.70403 -23.26245 -22.21520 -21.17927 -20.68887 -19.89773 -18.97150 -17.43581 -16.99598 -16.67697 -15.67382 -15.11194 -14.65362 -14.57645 -14.12066 -14.08882 -13.83330 -13.60480 -13.40828 -13.13077 -12.86422 -12.75116 -12.33899 -12.18029 -11.71123 -11.49385 -11.25460 -11.12040 -10.95870 -10.90272 -10.66327 -10.64012 -10.21808 -10.13117 -9.98802 -9.84828 -9.49372 -9.45393 -9.31661 -8.42659 -8.18185 -6.60985 -5.71985 -3.13807 2.55552 3.11637 3.42938 3.48487 3.50008 4.05373 4.47588 4.49452 4.55432 4.64159 4.73460 4.92201 5.06574 5.19103 5.30714 5.39964 5.46220 5.48623 5.51186 5.56288 5.68263 5.79928 5.83488 5.95886 6.06285 6.10979 6.19937 6.39161 6.46726 6.61417 6.65305 6.70007 6.81419 6.83513 7.05261 7.06702 7.35403 7.46335 7.60827 7.75643 7.85800 8.12349 8.51832 9.28168 9.91988 10.48945 11.36691 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029090 B = 0.003832 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.302551 B = 7305.030117 C = 7352.855921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.170 3.830 11 C -0.123 4.123 12 C 0.093 3.907 13 N -0.678 5.678 14 C 0.097 3.903 15 H 0.080 0.920 16 C -0.111 4.111 17 C -0.141 4.141 18 C 0.108 3.892 19 N -0.727 5.727 20 C 0.521 3.479 21 O -0.548 6.548 22 C -0.170 4.170 23 C -0.132 4.132 24 C 0.147 3.853 25 H 0.254 0.746 26 H 0.088 0.912 27 H 0.015 0.985 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.335 0.665 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.399 0.601 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.016 0.984 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -18.357 12.588 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.162 4.162 12 C -0.016 4.016 13 N -0.307 5.307 14 C -0.014 4.014 15 H 0.099 0.901 16 C -0.149 4.149 17 C -0.180 4.180 18 C -0.016 4.016 19 N -0.381 5.381 20 C 0.307 3.693 21 O -0.425 6.425 22 C -0.212 4.212 23 C -0.172 4.172 24 C 0.020 3.980 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.033 0.967 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.153 0.847 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.235 0.765 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.034 0.966 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.626 -17.514 12.519 21.589 hybrid contribution -0.214 0.110 -0.605 0.651 sum -1.840 -17.404 11.914 21.171 Atomic orbital electron populations 1.70040 1.05261 1.25527 1.53901 1.25031 0.95248 0.98362 1.01016 0.86375 0.78901 0.83432 0.78093 1.20941 1.21676 1.21037 1.19155 0.92673 0.84941 1.41455 0.91746 1.44031 1.35772 1.01291 1.50294 1.20709 0.88532 0.98371 0.88001 1.22113 1.00072 0.94403 0.99652 1.21547 0.97202 0.93115 0.89724 1.60763 1.10997 1.19923 1.39025 1.21235 0.93158 0.93765 0.93243 0.90129 1.21132 0.96768 1.01971 0.95005 1.21839 0.98363 0.97718 1.00124 1.21817 0.95768 0.96931 0.87119 1.45971 1.10740 1.67102 1.14240 1.20517 0.91145 0.75681 0.82006 1.90787 1.65546 1.49982 1.36136 1.22860 0.92542 1.01819 1.03942 1.22202 0.97363 0.98932 0.98687 1.20857 0.97597 0.86956 0.92583 0.93637 0.89404 0.96730 0.93865 0.92148 0.94168 0.84664 0.92032 0.90394 0.90365 0.91028 0.90592 0.89659 0.76545 0.88501 0.89297 0.93534 0.91499 0.96628 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 11.19 55.49 0.62 -26.34 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.25 -7.12 9.58 -15.06 -0.14 -7.26 16 8 H 0.06 1.77 7.89 -52.48 -0.41 1.36 16 9 N -0.59 -15.31 3.00 -172.58 -0.52 -15.83 16 10 C 0.17 4.25 5.28 -3.93 -0.02 4.23 16 11 C -0.12 -2.48 5.55 -26.83 -0.15 -2.63 16 12 C 0.09 1.60 2.13 -67.67 -0.14 1.46 16 13 N -0.68 -9.12 6.01 -100.30 -0.60 -9.72 16 14 C 0.10 1.14 2.09 -68.30 -0.14 1.00 16 15 H 0.08 1.18 6.80 -51.93 -0.35 0.83 16 16 C -0.11 -0.97 4.85 -27.96 -0.14 -1.11 16 17 C -0.14 -0.96 5.74 -27.36 -0.16 -1.12 16 18 C 0.11 0.62 6.47 -3.66 -0.02 0.60 16 19 N -0.73 -6.53 5.27 -59.90 -0.32 -6.85 16 20 C 0.52 6.78 7.06 -11.26 -0.08 6.70 16 21 O -0.55 -9.92 17.92 5.55 0.10 -9.83 16 22 C -0.17 -1.90 4.81 -27.50 -0.13 -2.03 16 23 C -0.13 -2.32 5.36 -26.61 -0.14 -2.46 16 24 C 0.15 3.18 6.52 -3.71 -0.02 3.16 16 25 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 27 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 28 H 0.04 0.82 7.39 -51.93 -0.38 0.44 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.04 0.76 7.16 -51.93 -0.37 0.39 16 31 H 0.34 3.93 8.09 -39.29 -0.32 3.61 16 32 H 0.06 0.46 7.88 -51.93 -0.41 0.05 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 36 H 0.08 0.39 6.71 -51.93 -0.35 0.04 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.40 3.21 8.91 -40.82 -0.36 2.85 16 39 H 0.10 1.26 7.30 -51.93 -0.38 0.88 16 40 H 0.09 0.74 6.77 -51.93 -0.35 0.39 16 41 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -33.29 334.98 -9.43 -42.72 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.35 Total: 3.19 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.38 Total: 0.51 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.82 Total: -58.74 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.10 Total: -9.83 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.29 -9.43 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330626378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.937 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds