Wall clock time and date at job start Tue Mar 31 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00143 * 2 1 4 4 H 1.48502 * 109.47300 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47135 * 299.99377 * 3 2 1 6 6 H 1.48500 * 109.47379 * 59.99662 * 3 2 1 7 7 C 1.37877 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00392 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99474 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46909 * 180.02562 * 9 7 2 11 11 C 1.46957 * 111.00038 * 169.99827 * 10 9 7 12 12 C 1.53054 * 109.36286 * 183.18759 * 11 10 9 13 13 N 1.46956 * 109.36154 * 301.59907 * 12 11 10 14 14 C 1.46905 * 110.99536 * 183.18968 * 13 12 11 15 15 C 1.53002 * 109.47055 * 170.00213 * 14 13 12 16 16 N 1.46497 * 109.47184 * 180.02562 * 15 14 13 17 17 C 1.46762 * 124.34850 * 270.19433 * 16 15 14 18 18 C 1.54479 * 105.53509 * 163.21275 * 17 16 15 19 19 C 1.54623 * 101.76448 * 25.20998 * 18 17 16 20 20 C 1.34417 * 124.35094 * 90.02197 * 16 15 14 21 21 O 1.21283 * 124.94355 * 0.43141 * 20 16 15 22 22 C 1.46963 * 110.88315 * 59.32599 * 13 12 11 23 23 C 1.46961 * 110.99995 * 293.80036 * 10 9 7 24 24 H 0.97006 * 120.00383 * 0.02562 * 1 2 3 25 25 H 1.08990 * 109.47469 * 60.00300 * 9 7 2 26 26 H 1.08996 * 109.47369 * 299.99394 * 9 7 2 27 27 H 1.08998 * 109.48456 * 63.22259 * 11 10 9 28 28 H 1.08999 * 109.50740 * 303.16433 * 11 10 9 29 29 H 1.08997 * 109.48812 * 181.63385 * 12 11 10 30 30 H 1.08997 * 109.48676 * 61.56392 * 12 11 10 31 31 H 1.08995 * 109.47320 * 50.00003 * 14 13 12 32 32 H 1.08999 * 109.47023 * 289.99929 * 14 13 12 33 33 H 1.09002 * 109.47177 * 60.00161 * 15 14 13 34 34 H 1.08999 * 109.46974 * 299.99746 * 15 14 13 35 35 H 1.09004 * 110.38933 * 44.10688 * 17 16 15 36 36 H 1.08995 * 110.11843 * 282.18104 * 17 16 15 37 37 H 1.09006 * 110.97141 * 267.09046 * 18 17 16 38 38 H 1.09002 * 110.97085 * 143.33080 * 18 17 16 39 39 H 1.09000 * 110.48720 * 216.52574 * 19 18 17 40 40 H 1.09003 * 110.60041 * 93.93250 * 19 18 17 41 41 H 1.08998 * 109.48701 * 60.63967 * 22 13 12 42 42 H 1.08994 * 109.48639 * 180.71007 * 22 13 12 43 43 H 1.08997 * 109.48408 * 296.77908 * 23 10 9 44 44 H 1.09004 * 109.48578 * 56.84006 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 1.5206 -4.8939 0.2401 12 6 2.5561 -6.0186 0.3130 13 7 3.3200 -6.0597 -0.9417 14 6 4.2746 -7.1763 -0.9405 15 6 4.8686 -7.3410 -2.3408 16 7 5.8201 -8.4549 -2.3398 17 6 7.2517 -8.3208 -2.0456 18 6 7.7470 -9.7516 -1.7396 19 6 6.7199 -10.6125 -2.5108 20 6 5.4936 -9.7315 -2.6048 21 8 4.3790 -10.1199 -2.8839 22 6 4.0050 -4.7815 -1.1800 23 6 2.9695 -3.6568 -1.2529 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 0.8257 -5.0917 -0.5760 28 1 0.9720 -4.8431 1.1806 29 1 2.0480 -6.9716 0.4608 30 1 3.2345 -5.8348 1.1460 31 1 3.7604 -8.0936 -0.6537 32 1 5.0739 -6.9701 -0.2287 33 1 5.3829 -6.4236 -2.6275 34 1 4.0693 -7.5471 -3.0526 35 1 7.4027 -7.6761 -1.1797 36 1 7.7762 -7.9173 -2.9117 37 1 7.7048 -9.9587 -0.6702 38 1 8.7544 -9.9067 -2.1259 39 1 6.4934 -11.5236 -1.9571 40 1 7.0928 -10.8547 -3.5060 41 1 4.6999 -4.5837 -0.3639 42 1 4.5532 -4.8326 -2.1207 43 1 2.2910 -3.8406 -2.0859 44 1 3.4775 -2.7038 -1.4007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330670366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:40 Heat of formation + Delta-G solvation = -20.072769 kcal Electronic energy + Delta-G solvation = -22280.337136 eV Core-core repulsion = 19039.518168 eV Total energy + Delta-G solvation = -3240.818968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60390 -38.77359 -36.64359 -35.46728 -33.25923 -32.28991 -30.47778 -29.25315 -27.87393 -27.07948 -24.85380 -23.26420 -22.46306 -22.01645 -21.25235 -19.52618 -19.16811 -17.12366 -16.79993 -16.30525 -15.79051 -15.58870 -14.86531 -14.56752 -14.26786 -14.23380 -14.02048 -13.87807 -13.65365 -13.52455 -13.16440 -13.05141 -12.58682 -12.22774 -11.98389 -11.87649 -11.70696 -11.40431 -11.31923 -11.07545 -10.85546 -10.72327 -10.60504 -10.37434 -10.28151 -9.97772 -9.73847 -9.16792 -8.96060 -8.44212 -8.16364 -7.22130 -6.02500 -4.03995 2.36891 2.72225 3.30430 3.37743 3.42085 4.02982 4.10396 4.13586 4.42047 4.42205 4.67397 4.82614 4.91555 5.00671 5.11383 5.17657 5.29058 5.31253 5.33210 5.38742 5.40408 5.55235 5.56803 5.62814 5.77860 5.82156 5.86489 5.89912 6.05368 6.20192 6.29881 6.45693 6.59971 6.68106 6.89663 7.17424 7.20883 7.36063 7.38307 7.80338 7.96364 8.09666 8.21602 8.55697 9.03802 9.60230 11.08463 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034690 B = 0.003005 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.955185 B = 9316.722982 C = 9784.923200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.064 3.936 13 N -0.537 5.537 14 C 0.044 3.956 15 C 0.128 3.872 16 N -0.619 5.619 17 C 0.099 3.901 18 C -0.132 4.132 19 C -0.156 4.156 20 C 0.513 3.487 21 O -0.530 6.530 22 C 0.055 3.945 23 C 0.067 3.933 24 H 0.261 0.739 25 H -0.008 1.008 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.029 0.971 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.363 -18.563 -3.502 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.064 4.064 13 N -0.263 5.263 14 C -0.086 4.086 15 C 0.006 3.994 16 N -0.353 5.353 17 C -0.024 4.024 18 C -0.170 4.170 19 C -0.196 4.196 20 C 0.301 3.699 21 O -0.406 6.406 22 C -0.073 4.073 23 C -0.062 4.062 24 H 0.070 0.930 25 H 0.010 0.990 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.556 -18.568 -3.649 24.496 hybrid contribution 0.396 1.041 0.094 1.117 sum 15.951 -17.527 -3.555 23.964 Atomic orbital electron populations 1.69969 1.06071 1.26658 1.51082 1.24998 0.94860 0.99324 0.95494 0.86452 0.80030 0.83479 0.77505 1.19693 1.21107 1.21034 1.21188 0.93454 0.89952 1.49917 0.91894 1.19708 0.90062 0.87286 0.96149 1.62289 1.28148 1.02785 1.33224 1.22067 0.94748 0.89891 1.00571 1.22143 0.96018 0.98687 0.89570 1.62088 1.25486 1.03129 1.35550 1.22376 0.94626 0.95268 0.96304 1.21405 0.92034 0.88007 0.97949 1.48308 1.09176 1.08216 1.69621 1.22108 0.80650 0.98080 1.01532 1.22596 0.99348 0.93568 1.01467 1.22338 0.94598 0.99369 1.03294 1.20950 0.89891 0.83231 0.75840 1.90752 1.24161 1.77365 1.48301 1.22325 0.96255 0.88767 0.99955 1.21986 0.95457 0.97320 0.91397 0.92971 0.99018 0.95230 0.95030 0.90954 0.91177 0.94325 0.90823 0.94940 0.90091 0.89029 0.90251 0.90914 0.89938 0.89117 0.88117 0.87863 0.94314 0.91168 0.95237 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.28 55.43 0.74 -26.14 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.25 8.47 -34.44 -0.29 -14.54 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 9 C 0.19 5.10 4.72 -4.97 -0.02 5.08 16 10 N -0.54 -11.86 4.70 -235.91 -1.11 -12.97 16 11 C 0.06 1.06 5.61 -3.76 -0.02 1.04 16 12 C 0.06 1.01 5.61 -3.77 -0.02 0.98 16 13 N -0.54 -8.13 4.71 -234.46 -1.10 -9.23 16 14 C 0.04 0.55 5.28 -3.82 -0.02 0.53 16 15 C 0.13 1.44 5.87 -4.04 -0.02 1.42 16 16 N -0.62 -6.07 2.93 -172.42 -0.51 -6.58 16 17 C 0.10 0.60 7.35 -3.12 -0.02 0.58 16 18 C -0.13 -0.58 7.18 -25.10 -0.18 -0.76 16 19 C -0.16 -1.02 6.86 -26.74 -0.18 -1.20 16 20 C 0.51 5.82 8.02 -10.86 -0.09 5.73 16 21 O -0.53 -8.48 17.59 5.55 0.10 -8.38 16 22 C 0.05 0.85 5.41 -3.77 -0.02 0.83 16 23 C 0.07 1.32 5.43 -3.77 -0.02 1.30 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 26 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 29 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.99 8.03 -51.93 -0.42 0.58 16 32 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.08 0.81 6.49 -51.93 -0.34 0.47 16 34 H 0.09 1.22 7.92 -51.93 -0.41 0.81 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.93 6.34 -51.93 -0.33 0.60 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.80 6.79 -51.93 -0.35 1.45 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -33.23 348.17 -10.35 -43.59 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -7.68 Total: -4.56 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.01 Total: 2.45 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -1.98 Total: -54.91 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.10 Total: -8.38 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.23 -10.35 -43.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330670366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.516 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds