Wall clock time and date at job start Tue Mar 31 2020 05:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 112.91907 * 2 1 4 4 C 1.53729 * 113.70274 * 131.48271 * 2 1 3 5 5 C 1.51510 * 86.60689 * 114.40151 * 4 2 1 6 6 O 1.21289 * 134.17479 * 179.97438 * 5 4 2 7 7 N 1.36112 * 91.66074 * 0.05212 * 5 4 2 8 8 C 1.46503 * 132.50503 * 179.97438 * 7 5 4 9 9 N 1.46897 * 109.47112 * 98.69371 * 8 7 5 10 10 C 1.46952 * 111.00270 * 278.52555 * 9 8 7 11 11 C 1.53056 * 109.36633 * 176.81054 * 10 9 8 12 12 N 1.46957 * 109.36127 * 58.40022 * 11 10 9 13 13 C 1.46901 * 111.00207 * 176.81223 * 12 11 10 14 14 C 1.50698 * 109.46946 * 293.80283 * 13 12 11 15 15 H 1.08001 * 120.00272 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00135 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00102 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99708 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46914 * 89.99590 * 18 16 14 20 20 H 1.48500 * 109.46827 * 209.99773 * 18 16 14 21 21 H 1.48500 * 109.46855 * 329.99503 * 18 16 14 22 22 C 1.46962 * 110.88234 * 300.68046 * 12 11 10 23 23 C 1.46957 * 110.99709 * 154.72423 * 9 8 7 24 24 H 1.09003 * 109.46841 * 69.67338 * 1 2 3 25 25 H 1.08993 * 109.47197 * 189.66756 * 1 2 3 26 26 H 1.09000 * 109.47402 * 309.67621 * 1 2 3 27 27 H 1.08997 * 109.47116 * 65.13610 * 3 2 1 28 28 H 1.08998 * 109.46673 * 185.13848 * 3 2 1 29 29 H 1.09005 * 109.46829 * 305.13408 * 3 2 1 30 30 H 1.09007 * 113.68740 * 228.82942 * 4 2 1 31 31 H 1.08997 * 113.69106 * 359.97078 * 4 2 1 32 32 H 1.09000 * 109.47395 * 218.70206 * 8 7 5 33 33 H 1.09005 * 109.46874 * 338.69673 * 8 7 5 34 34 H 1.09005 * 109.49174 * 296.77596 * 10 9 8 35 35 H 1.09000 * 109.48887 * 56.84649 * 10 9 8 36 36 H 1.09001 * 109.48923 * 298.44072 * 11 10 9 37 37 H 1.08996 * 109.49367 * 178.36749 * 11 10 9 38 38 H 1.09004 * 109.46713 * 53.79482 * 13 12 11 39 39 H 1.08993 * 109.47512 * 173.80034 * 13 12 11 40 40 H 0.96999 * 119.99742 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.48672 * 299.35264 * 22 12 11 42 42 H 1.08996 * 109.48458 * 179.28625 * 22 12 11 43 43 H 1.08994 * 109.49338 * 303.15944 * 23 9 8 44 44 H 1.09002 * 109.49135 * 63.22542 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1258 1.4092 0.0000 4 6 2.1480 -0.9324 1.0545 5 6 2.6841 -1.7435 -0.1075 6 8 3.3520 -2.7519 -0.1975 7 7 2.1226 -0.8941 -1.0108 8 6 2.1099 -0.8741 -2.4756 9 7 0.8483 -1.4480 -2.9623 10 6 0.9048 -2.9165 -2.9666 11 6 -0.4516 -3.4753 -3.4030 12 7 -0.7841 -2.9599 -4.7384 13 6 -2.0457 -3.5338 -5.2252 14 6 -1.8711 -5.0138 -5.4488 15 1 -0.9183 -5.4814 -5.2490 16 6 -2.9280 -5.7712 -5.9077 17 7 -2.7754 -7.0627 -6.1033 18 14 -4.5762 -4.9625 -6.2527 19 1 -4.6159 -4.5023 -7.6640 20 1 -5.6669 -5.9432 -6.0208 21 1 -4.7558 -3.7991 -5.3474 22 6 -0.8406 -1.4914 -4.7341 23 6 0.5159 -0.9327 -4.2978 24 1 -0.3633 0.3570 -0.9637 25 1 -0.3633 -1.0130 0.1726 26 1 -0.3634 0.6561 0.7909 27 1 1.8694 1.9121 0.9324 28 1 3.2100 1.3452 -0.0920 29 1 1.7226 1.9742 -0.8405 30 1 2.9257 -0.4601 1.6548 31 1 1.4101 -1.4634 1.6559 32 1 2.2004 0.1542 -2.8258 33 1 2.9464 -1.4616 -2.8543 34 1 1.6757 -3.2487 -3.6621 35 1 1.1401 -3.2743 -1.9643 36 1 -1.2181 -3.1655 -2.6925 37 1 -0.4034 -4.5637 -3.4349 38 1 -2.8293 -3.3681 -4.4858 39 1 -2.3246 -3.0549 -6.1637 40 1 -3.5188 -7.5954 -6.4265 41 1 -1.6115 -1.1592 -4.0388 42 1 -1.0758 -1.1336 -5.7364 43 1 0.4676 0.1558 -4.2659 44 1 1.2823 -1.2423 -5.0083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332262629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:13 Heat of formation + Delta-G solvation = 12.869301 kcal Electronic energy + Delta-G solvation = -23056.941677 eV Core-core repulsion = 19817.551184 eV Total energy + Delta-G solvation = -3239.390493 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98203 -38.69172 -37.04235 -35.22172 -32.54146 -31.57146 -30.50769 -29.75940 -27.97273 -27.70348 -25.45780 -23.41030 -22.98697 -21.36140 -21.06601 -19.28603 -18.20731 -16.96293 -16.82133 -16.47131 -16.32057 -15.46106 -14.79828 -14.42493 -14.37727 -14.00894 -13.88908 -13.72139 -13.63971 -13.31263 -13.07870 -12.68350 -12.53838 -12.34138 -12.04773 -11.96797 -11.73596 -11.65517 -11.41728 -11.13770 -10.96745 -10.83444 -10.62384 -10.42732 -10.15828 -9.93907 -9.83162 -9.27284 -9.03474 -8.56740 -8.25765 -7.37689 -6.04834 -4.02371 2.36971 2.77231 3.28177 3.35614 3.37551 3.83520 4.00618 4.27389 4.41963 4.54909 4.67689 4.75249 4.89369 5.13585 5.19370 5.26396 5.27032 5.33767 5.35666 5.45509 5.47716 5.56195 5.61365 5.64346 5.71974 5.84004 5.85181 5.99223 6.07230 6.13174 6.25934 6.44097 6.47067 6.56453 6.64399 6.83559 6.96277 7.10454 7.22215 7.59287 7.90194 8.04160 8.16158 8.65979 9.03510 9.56679 11.08303 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027028 B = 0.003914 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.714294 B = 7152.266430 C = 7436.389118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.159 3.841 3 C -0.146 4.146 4 C -0.173 4.173 5 C 0.527 3.473 6 O -0.507 6.507 7 N -0.616 5.616 8 C 0.289 3.711 9 N -0.553 5.553 10 C 0.063 3.937 11 C 0.070 3.930 12 N -0.529 5.529 13 C 0.164 3.836 14 C -0.510 4.510 15 H 0.080 0.920 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.875 3.125 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.055 3.945 23 C 0.067 3.933 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.091 0.909 38 H -0.011 1.011 39 H 0.024 0.976 40 H 0.263 0.737 41 H 0.030 0.970 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.103 19.843 13.023 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.075 3.925 3 C -0.204 4.204 4 C -0.213 4.213 5 C 0.314 3.686 6 O -0.380 6.380 7 N -0.355 5.355 8 C 0.078 3.922 9 N -0.280 5.280 10 C -0.065 4.065 11 C -0.058 4.058 12 N -0.254 5.254 13 C 0.037 3.963 14 C -0.548 4.548 15 H 0.098 0.902 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.703 3.297 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.074 4.074 23 C -0.062 4.062 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.110 0.890 38 H 0.006 0.994 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.385 19.114 12.683 24.424 hybrid contribution -1.083 0.293 -0.433 1.202 sum 7.302 19.407 12.250 24.084 Atomic orbital electron populations 1.21834 0.92114 1.02916 1.02953 1.21764 0.94959 0.91355 0.84386 1.21895 1.01094 0.94466 1.02946 1.24023 1.01965 0.97465 0.97895 1.22234 0.77800 0.82333 0.86282 1.90763 1.39143 1.23561 1.84523 1.51385 1.52330 1.27104 1.04648 1.21715 0.91251 0.99770 0.79462 1.61966 1.32484 1.08126 1.25469 1.22213 0.98377 0.85717 1.00164 1.21998 0.93863 1.00914 0.89073 1.62108 1.36059 1.03546 1.23681 1.20143 0.85455 0.96500 0.94168 1.21034 0.99523 0.90247 1.44033 0.90203 1.24902 0.98524 0.94714 0.95164 1.69896 1.32050 1.05522 1.46432 0.86858 0.84248 0.79537 0.79090 1.20159 1.21194 1.19307 1.22096 0.95011 0.90347 0.99920 1.22080 0.97745 0.98316 0.88030 0.90965 0.91743 0.91596 0.90767 0.91946 0.91669 0.87173 0.86845 0.89726 0.92262 0.94067 0.91338 0.95419 0.89044 0.99372 0.95836 0.92660 0.95148 0.90910 0.91060 0.93914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.41 37.16 0.35 -0.81 16 2 C 0.16 1.28 1.72 -131.12 -0.23 1.06 16 3 C -0.15 -0.84 9.37 37.16 0.35 -0.50 16 4 C -0.17 -1.39 7.51 -27.14 -0.20 -1.60 16 5 C 0.53 6.79 9.48 -10.14 -0.10 6.69 16 6 O -0.51 -8.74 18.03 5.55 0.10 -8.64 16 7 N -0.62 -6.90 3.15 -166.49 -0.52 -7.42 16 8 C 0.29 3.40 6.59 -63.32 -0.42 2.98 16 9 N -0.55 -7.75 4.81 -238.37 -1.15 -8.89 16 10 C 0.06 1.07 5.47 -3.77 -0.02 1.05 16 11 C 0.07 1.40 5.43 -3.76 -0.02 1.38 16 12 N -0.53 -11.20 4.70 -235.91 -1.11 -12.31 16 13 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 14 C -0.51 -14.65 9.03 -34.44 -0.31 -14.97 16 15 H 0.08 2.51 7.37 -52.49 -0.39 2.12 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 18 Si 0.88 21.62 27.47 -169.99 -4.67 16.96 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 22 C 0.06 0.93 5.61 -3.76 -0.02 0.91 16 23 C 0.07 0.91 5.53 -3.77 -0.02 0.89 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.64 8.06 -51.93 -0.42 0.22 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.11 0.65 8.01 -51.92 -0.42 0.24 16 31 H 0.11 0.81 7.98 -51.93 -0.41 0.40 16 32 H 0.08 0.81 7.75 -51.93 -0.40 0.40 16 33 H 0.06 0.77 7.90 -51.93 -0.41 0.36 16 34 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 35 H 0.07 1.19 7.95 -51.93 -0.41 0.78 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 2.06 6.79 -51.93 -0.35 1.71 16 38 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 39 H 0.02 0.57 7.45 -51.93 -0.39 0.19 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 43 H 0.07 0.78 7.98 -51.93 -0.41 0.37 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -33.24 351.33 -9.81 -43.05 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -7.78 Total: -3.97 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.76 Total: 2.99 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -2.01 Total: -55.68 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.10 Total: -8.64 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.24 -9.81 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332262629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.923 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds