Wall clock time and date at job start Tue Mar 31 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99972 * 2 1 4 4 C 1.50705 * 109.46826 * 66.04586 * 3 2 1 5 5 C 1.35312 * 126.12509 * 95.00458 * 4 3 2 6 6 C 1.39870 * 107.92194 * 179.97438 * 5 4 3 7 7 C 1.50700 * 125.90094 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.47161 * 75.00107 * 7 6 5 9 9 C 1.52995 * 109.47231 * 195.00200 * 7 6 5 10 10 C 1.53002 * 109.47159 * 315.00057 * 7 6 5 11 11 N 1.30836 * 108.20248 * 0.02562 * 6 5 4 12 12 N 1.34946 * 126.12651 * 274.68811 * 4 3 2 13 13 H 0.96996 * 126.04164 * 0.03993 * 12 4 3 14 14 C 1.46896 * 110.99919 * 236.04978 * 2 1 3 15 15 C 1.53001 * 109.47230 * 293.95264 * 14 2 1 16 16 H 1.08998 * 109.47065 * 59.99662 * 15 14 2 17 17 O 1.42908 * 109.46829 * 300.00177 * 15 14 2 18 18 C 1.50697 * 109.46995 * 180.02562 * 15 14 2 19 19 H 1.07991 * 120.00449 * 359.72153 * 18 15 14 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00035 * 179.72339 * 20 18 15 22 22 Si 1.86803 * 119.99853 * 359.72191 * 20 18 15 23 23 H 1.48500 * 109.46986 * 90.00256 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00273 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00102 * 22 20 18 26 26 H 1.08996 * 109.46926 * 183.95025 * 1 2 3 27 27 H 1.08998 * 109.47045 * 303.95299 * 1 2 3 28 28 H 1.09001 * 109.47220 * 63.95437 * 1 2 3 29 29 H 1.08996 * 109.47582 * 186.04410 * 3 2 1 30 30 H 1.09006 * 109.47301 * 306.05124 * 3 2 1 31 31 H 1.08009 * 126.04038 * 359.93606 * 5 4 3 32 32 H 1.08994 * 109.47327 * 59.99878 * 8 7 6 33 33 H 1.09005 * 109.47547 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.47247 * 300.00294 * 8 7 6 35 35 H 1.08998 * 109.47270 * 59.99826 * 9 7 6 36 36 H 1.09001 * 109.47625 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.47407 * 300.00129 * 9 7 6 38 38 H 1.09004 * 109.46760 * 60.00005 * 10 7 6 39 39 H 1.09002 * 109.47528 * 179.97438 * 10 7 6 40 40 H 1.08998 * 109.47003 * 299.99967 * 10 7 6 41 41 H 1.08998 * 109.47372 * 173.95115 * 14 2 1 42 42 H 1.09006 * 109.47513 * 53.95286 * 14 2 1 43 43 H 0.96704 * 113.99704 * 299.99964 * 17 15 14 44 44 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 6 2.4203 2.1275 2.3989 6 6 1.7153 2.8345 3.3784 7 6 2.2119 3.1583 4.7639 8 6 3.2418 4.2870 4.6857 9 6 1.0358 3.6007 5.6368 10 6 2.8622 1.9159 5.3759 11 7 0.5502 3.1662 2.8840 12 7 0.4794 2.6855 1.5701 13 1 -0.2703 2.7904 0.9637 14 6 1.9954 -0.7659 -1.1376 15 6 1.6315 -2.2426 -0.9705 16 1 0.5472 -2.3474 -0.9324 17 8 2.2010 -2.7391 0.2425 18 6 2.1721 -3.0283 -2.1372 19 1 2.7165 -2.5243 -2.9219 20 6 1.9671 -4.3901 -2.2054 21 7 2.4341 -5.0751 -3.2264 22 14 1.0260 -5.2621 -0.8477 23 1 -0.4212 -5.2783 -1.1802 24 1 1.5201 -6.6566 -0.7199 25 1 1.2310 -4.5448 0.4362 26 1 -0.3633 -1.0252 0.0708 27 1 -0.3633 0.5740 0.8524 28 1 -0.3634 0.4512 -0.9233 29 1 3.0797 1.3445 -0.1082 30 1 1.5610 1.9274 -0.8309 31 1 3.4141 1.7175 2.5027 32 1 2.7786 5.1720 4.2497 33 1 3.6014 4.5209 5.6878 34 1 4.0798 3.9718 4.0638 35 1 0.3020 2.7966 5.6925 36 1 1.3948 3.8345 6.6390 37 1 0.5725 4.4858 5.2008 38 1 3.7001 1.6008 4.7540 39 1 3.2218 2.1502 6.3779 40 1 2.1284 1.1119 5.4316 41 1 3.0797 -0.6610 -1.1757 42 1 1.5611 -0.3871 -2.0629 43 1 3.1653 -2.6770 0.2785 44 1 2.2902 -6.0332 -3.2741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333035373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:51 Heat of formation + Delta-G solvation = 18.987493 kcal Electronic energy + Delta-G solvation = -22481.510731 eV Core-core repulsion = 19242.385543 eV Total energy + Delta-G solvation = -3239.125188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36434 -37.82703 -36.80349 -35.18068 -32.24317 -31.19042 -30.49066 -28.73669 -27.63205 -27.37022 -26.78689 -25.50364 -22.68259 -22.46181 -20.27732 -20.12768 -18.35625 -17.36499 -17.24109 -15.57953 -15.11752 -15.06832 -14.71740 -14.64546 -14.53810 -14.03639 -13.84366 -13.64003 -13.38518 -13.19428 -12.67913 -12.55662 -12.39081 -12.16888 -11.96897 -11.76399 -11.63552 -11.40444 -11.21136 -11.12537 -11.11011 -10.98799 -10.92614 -10.42901 -10.34501 -9.94526 -9.27525 -9.04571 -8.64247 -8.54107 -8.28424 -7.91048 -6.15114 -4.26725 1.90182 2.81045 2.87639 3.38204 3.48432 3.76464 4.28455 4.44032 4.52982 4.58580 4.82708 4.88636 5.06435 5.13795 5.20340 5.41700 5.43669 5.49485 5.55767 5.58761 5.63899 5.67698 5.74869 5.77918 5.81565 5.87997 5.91868 5.95792 5.98550 6.15652 6.16789 6.20624 6.23914 6.35233 6.53470 6.71447 7.15057 7.22924 7.32232 7.44015 7.63170 7.75363 8.26985 8.81171 9.10544 9.49992 10.95432 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.003572 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.602036 B = 7837.599842 C = 8153.925731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.525 5.525 3 C 0.111 3.889 4 C 0.108 3.892 5 C -0.249 4.249 6 C 0.088 3.912 7 C 0.012 3.988 8 C -0.135 4.135 9 C -0.135 4.135 10 C -0.138 4.138 11 N -0.295 5.295 12 N -0.478 5.478 13 H 0.433 0.567 14 C 0.040 3.960 15 C 0.202 3.798 16 H 0.052 0.948 17 O -0.569 6.569 18 C -0.567 4.567 19 H 0.071 0.929 20 C 0.084 3.916 21 N -0.893 5.893 22 Si 0.870 3.130 23 H -0.289 1.289 24 H -0.295 1.295 25 H -0.214 1.214 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.021 0.979 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.145 0.855 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.034 0.966 43 H 0.355 0.645 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 17.838 13.616 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.249 5.249 3 C -0.018 4.018 4 C -0.021 4.021 5 C -0.279 4.279 6 C -0.078 4.078 7 C 0.010 3.990 8 C -0.194 4.194 9 C -0.193 4.193 10 C -0.196 4.196 11 N -0.118 5.118 12 N -0.187 5.187 13 H 0.277 0.723 14 C -0.087 4.087 15 C 0.144 3.856 16 H 0.069 0.931 17 O -0.374 6.374 18 C -0.605 4.605 19 H 0.089 0.911 20 C -0.120 4.120 21 N -0.530 5.530 22 Si 0.696 3.304 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.136 1.136 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.039 0.961 29 H 0.118 0.882 30 H 0.058 0.942 31 H 0.163 0.837 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.200 0.800 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.757 17.921 14.321 23.007 hybrid contribution 0.085 -0.498 -1.202 1.303 sum -1.671 17.423 13.119 21.874 Atomic orbital electron populations 1.22473 0.88183 1.03215 0.98968 1.62033 1.07432 1.10151 1.45263 1.20749 1.01697 0.89259 0.90121 1.20976 0.87416 0.95895 0.97801 1.21012 1.03194 1.10749 0.92928 1.22110 0.91848 0.97510 0.96372 1.18975 0.95556 0.96260 0.88179 1.21839 0.98244 0.97350 1.01926 1.21780 0.97178 1.01840 0.98498 1.21861 1.00926 0.96481 1.00316 1.77207 1.20246 1.23151 0.91158 1.46340 1.15101 1.45168 1.12090 0.72331 1.22913 0.99808 0.96814 0.89158 1.19702 0.94508 0.87267 0.84090 0.93057 1.86676 1.23936 1.85372 1.41455 1.21501 1.38307 0.93382 1.07290 0.91071 1.24980 0.94162 0.97514 0.95375 1.69956 1.44893 1.07987 1.30198 0.87047 0.78952 0.78243 0.86150 1.21554 1.22225 1.13647 0.90300 0.92562 0.96065 0.88206 0.94163 0.83742 0.92651 0.92016 0.92116 0.92481 0.92546 0.92193 0.91887 0.92119 0.92263 0.90869 0.94761 0.79955 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.15 60.07 0.55 0.86 16 2 N -0.52 -8.45 4.62 -244.37 -1.13 -9.58 16 3 C 0.11 1.45 5.51 -4.97 -0.03 1.43 16 4 C 0.11 1.42 5.93 -82.26 -0.49 0.93 16 5 C -0.25 -3.29 10.01 -40.01 -0.40 -3.69 16 6 C 0.09 1.14 5.66 -82.41 -0.47 0.67 16 7 C 0.01 0.13 0.96 -155.66 -0.15 -0.02 16 8 C -0.14 -1.16 8.46 37.16 0.31 -0.85 16 9 C -0.14 -1.31 8.03 37.16 0.30 -1.01 16 10 C -0.14 -1.29 8.20 37.16 0.30 -0.99 16 11 N -0.30 -4.09 12.02 33.67 0.40 -3.69 16 12 N -0.48 -6.04 6.41 33.48 0.21 -5.83 16 13 H 0.43 4.48 8.69 -182.61 -1.59 2.90 16 14 C 0.04 0.74 4.56 -3.83 -0.02 0.72 16 15 C 0.20 4.58 2.18 -27.88 -0.06 4.52 16 16 H 0.05 1.21 5.99 -51.93 -0.31 0.90 16 17 O -0.57 -12.84 9.99 -35.23 -0.35 -13.19 16 18 C -0.57 -15.37 9.34 -34.44 -0.32 -15.69 16 19 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 20 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 21 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 22 Si 0.87 21.73 26.99 -169.99 -4.59 17.14 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.21 -5.27 5.29 56.52 0.30 -4.97 16 26 H 0.08 1.35 6.47 -51.93 -0.34 1.02 16 27 H 0.06 0.79 6.15 -51.93 -0.32 0.47 16 28 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 1.22 7.93 -51.93 -0.41 0.80 16 30 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.14 1.75 7.71 -52.48 -0.40 1.35 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.06 0.58 7.53 -51.93 -0.39 0.19 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 42 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 43 H 0.35 7.15 9.04 45.56 0.41 7.56 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -31.86 350.14 -8.02 -39.88 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -8.06 Total: 7.05 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -0.56 Total: -10.82 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.26 Total: -45.34 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.35 Total: -13.19 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.59 Total: 17.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.86 -8.02 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333035373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.870 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds