Wall clock time and date at job start Tue Mar 31 2020 05:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34129 * 125.98482 * 2 1 4 4 C 1.30508 * 109.25263 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.64695 * 180.02562 * 4 3 2 6 6 N 1.35041 * 108.69678 * 359.97438 * 4 3 2 7 7 C 1.46502 * 126.39412 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47039 * 90.02006 * 7 6 4 9 9 H 1.09002 * 109.47086 * 55.00583 * 8 7 6 10 10 O 1.42900 * 109.47518 * 295.00411 * 8 7 6 11 11 C 1.52998 * 109.47109 * 174.99840 * 8 7 6 12 12 N 1.46899 * 109.47513 * 181.36822 * 11 8 7 13 13 C 1.46899 * 111.00526 * 195.99763 * 12 11 8 14 14 C 1.46901 * 110.99665 * 72.03976 * 12 11 8 15 15 C 1.50701 * 109.46985 * 190.00423 * 14 12 11 16 16 H 1.08005 * 119.99998 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00142 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99896 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00132 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47398 * 59.99839 * 19 17 15 21 21 H 1.48506 * 109.47160 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46921 * 299.99563 * 19 17 15 23 23 C 1.34668 * 125.98923 * 180.34887 * 2 1 3 24 24 C 1.50697 * 126.59319 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.46739 * 89.98108 * 1 2 3 26 26 H 1.08994 * 109.46919 * 209.97969 * 1 2 3 27 27 H 1.08994 * 109.47388 * 329.98060 * 1 2 3 28 28 H 1.09001 * 109.47079 * 269.95385 * 5 4 3 29 29 H 1.08995 * 109.47374 * 29.96090 * 5 4 3 30 30 H 1.08997 * 109.46803 * 149.95964 * 5 4 3 31 31 H 1.09001 * 109.47123 * 330.02305 * 7 6 4 32 32 H 1.08995 * 109.47312 * 210.02241 * 7 6 4 33 33 H 0.96708 * 113.99276 * 299.99764 * 10 8 7 34 34 H 1.08998 * 109.47081 * 61.36903 * 11 8 7 35 35 H 1.09000 * 109.47442 * 301.36886 * 11 8 7 36 36 H 1.08992 * 109.46952 * 54.90486 * 13 12 11 37 37 H 1.09005 * 109.46327 * 294.91063 * 13 12 11 38 38 H 1.08994 * 109.47423 * 174.91150 * 13 12 11 39 39 H 1.08999 * 109.47236 * 310.00095 * 14 12 11 40 40 H 1.08996 * 109.47070 * 70.00720 * 14 12 11 41 41 H 0.96997 * 119.99963 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.47219 * 270.16455 * 24 23 2 43 43 H 1.09002 * 109.47112 * 30.16769 * 24 23 2 44 44 H 1.09002 * 109.46682 * 150.16546 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5450 0.7096 -0.0006 5 6 4.7386 1.6295 -0.0002 6 7 3.5913 -0.6400 -0.0004 7 6 4.7996 -1.4683 -0.0003 8 6 5.2201 -1.7569 1.4423 9 1 4.3856 -2.2057 1.9811 10 8 5.5984 -0.5361 2.0815 11 6 6.4067 -2.7227 1.4442 12 7 6.7895 -3.0254 2.8297 13 6 8.1283 -3.6275 2.8865 14 6 5.7942 -3.8934 3.4732 15 6 6.0849 -3.9826 4.9492 16 1 6.9252 -3.4483 5.3673 17 6 5.2787 -4.7471 5.7656 18 7 4.2557 -5.3981 5.2563 19 14 5.6385 -4.8571 7.5953 20 1 5.5729 -3.5003 8.1953 21 1 4.6325 -5.7346 8.2458 22 1 6.9960 -5.4236 7.7996 23 6 2.2984 -1.0896 -0.0066 24 6 1.8473 -2.5275 -0.0148 25 1 -0.3633 0.0003 -1.0277 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3634 0.8897 0.5141 28 1 5.0266 1.8513 -1.0278 29 1 4.4831 2.5561 0.5137 30 1 5.5695 1.1463 0.5137 31 1 5.6026 -0.9396 -0.5139 32 1 4.5963 -2.4077 -0.5143 33 1 6.3373 -0.0812 1.6545 34 1 7.2491 -2.2642 0.9264 35 1 6.1256 -3.6447 0.9352 36 1 8.8421 -2.9738 2.3854 37 1 8.1119 -4.5971 2.3887 38 1 8.4240 -3.7583 3.9274 39 1 4.7981 -3.4769 3.3236 40 1 5.8416 -4.8893 3.0327 41 1 3.6883 -5.9356 5.8307 42 1 1.7361 -2.8793 1.0108 43 1 0.8906 -2.6052 -0.5314 44 1 2.5890 -3.1379 -0.5300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333233298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:40 Heat of formation + Delta-G solvation = 3.121264 kcal Electronic energy + Delta-G solvation = -22929.679466 eV Core-core repulsion = 19689.866267 eV Total energy + Delta-G solvation = -3239.813199 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08366 -38.17704 -35.75899 -33.94424 -33.17112 -32.53508 -30.26559 -29.49023 -28.55384 -27.39447 -26.25800 -24.04013 -23.49571 -22.14281 -20.24656 -20.03330 -19.35527 -16.90982 -16.49639 -16.15505 -15.60405 -15.19022 -14.71522 -14.50333 -14.20701 -13.83478 -13.78215 -13.38297 -13.25934 -12.85031 -12.67267 -12.59545 -12.43292 -12.26447 -12.15577 -12.02411 -11.92776 -11.85733 -11.54867 -11.29003 -11.00239 -10.88215 -10.70672 -10.44207 -10.14399 -9.82225 -9.72480 -9.28351 -9.07283 -8.45468 -7.82830 -7.32798 -6.05788 -4.06536 2.14650 2.84135 3.23450 3.32469 3.36596 3.39986 4.29349 4.41129 4.50153 4.54395 4.75778 4.82779 5.08250 5.17591 5.23320 5.29428 5.33839 5.36901 5.38821 5.48035 5.50405 5.56966 5.64794 5.78872 5.82197 5.86995 5.96456 5.98164 6.03948 6.18270 6.22998 6.24192 6.59003 6.63605 6.97785 7.17059 7.21827 7.37410 7.72861 7.88110 8.00799 8.11632 8.30047 8.47873 8.99834 9.57652 11.05370 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.004521 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.873345 B = 6192.194836 C = 6954.981869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.006 4.006 3 N -0.494 5.494 4 C 0.215 3.785 5 C -0.066 4.066 6 N -0.442 5.442 7 C 0.069 3.931 8 C 0.102 3.898 9 H 0.110 0.890 10 O -0.529 6.529 11 C 0.028 3.972 12 N -0.530 5.530 13 C 0.040 3.960 14 C 0.193 3.807 15 C -0.506 4.506 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.900 5.900 19 Si 0.898 3.102 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.025 4.025 24 C -0.078 4.078 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.360 0.640 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.043 0.957 37 H 0.011 0.989 38 H 0.075 0.925 39 H 0.030 0.970 40 H -0.011 1.011 41 H 0.262 0.738 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 7.568 -14.447 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.134 4.134 3 N -0.213 5.213 4 C -0.047 4.047 5 C -0.124 4.124 6 N -0.124 5.124 7 C -0.055 4.055 8 C 0.041 3.959 9 H 0.128 0.872 10 O -0.333 6.333 11 C -0.102 4.102 12 N -0.254 5.254 13 C -0.108 4.108 14 C 0.069 3.931 15 C -0.545 4.545 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.140 4.140 24 C -0.136 4.136 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.206 0.794 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.029 0.971 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.007 0.993 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.504 8.439 -13.724 16.119 hybrid contribution 0.882 -1.778 0.162 1.991 sum 0.379 6.662 -13.561 15.114 Atomic orbital electron populations 1.19975 0.88022 1.02485 1.01565 1.20383 0.96126 0.88056 1.08878 1.70076 0.99797 1.30298 1.21177 1.23001 0.95089 0.81360 1.05204 1.20194 0.91985 0.97671 1.02543 1.45033 1.05895 1.06925 1.54591 1.22697 0.86123 0.96301 1.00331 1.22324 0.98053 0.85786 0.89751 0.87232 1.86818 1.54068 1.35784 1.56639 1.22610 0.96858 0.97763 0.92991 1.62034 1.03406 1.47966 1.12024 1.22200 0.90502 0.95661 1.02469 1.19772 0.90203 0.88845 0.94322 1.21087 1.13060 1.28193 0.92164 0.91922 1.24975 0.95052 0.95541 0.98974 1.69935 1.16876 1.31363 1.35781 0.86553 0.77862 0.78071 0.84903 1.20095 1.21323 1.20280 1.20956 0.83431 0.97333 1.12234 1.20236 1.01374 0.88735 1.03229 0.91954 0.91485 0.91437 0.90928 0.89340 0.90601 0.88903 0.88441 0.79374 0.91763 0.94831 0.93783 0.97053 0.90618 0.95246 0.99326 0.92860 0.90437 0.90259 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.05 36.01 0.36 -0.40 16 2 C -0.01 -0.09 7.09 -82.85 -0.59 -0.68 16 3 N -0.49 -8.39 11.25 -7.07 -0.08 -8.47 16 4 C 0.22 3.20 7.72 -155.41 -1.20 2.00 16 5 C -0.07 -0.70 9.95 36.00 0.36 -0.34 16 6 N -0.44 -6.32 2.71 -109.35 -0.30 -6.61 16 7 C 0.07 0.81 5.23 -4.04 -0.02 0.79 16 8 C 0.10 1.55 3.23 -26.73 -0.09 1.47 16 9 H 0.11 2.13 6.56 -51.93 -0.34 1.79 16 10 O -0.53 -8.50 12.11 -35.23 -0.43 -8.92 16 11 C 0.03 0.43 4.63 -3.83 -0.02 0.42 16 12 N -0.53 -10.90 4.60 -244.38 -1.12 -12.02 16 13 C 0.04 0.74 9.33 60.06 0.56 1.30 16 14 C 0.19 4.93 4.57 -4.97 -0.02 4.91 16 15 C -0.51 -14.23 8.53 -34.44 -0.29 -14.52 16 16 H 0.06 1.75 7.10 -52.48 -0.37 1.38 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 19 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.03 -0.38 6.95 -81.60 -0.57 -0.95 16 24 C -0.08 -0.95 9.78 36.00 0.35 -0.60 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.73 7.81 -51.93 -0.41 0.32 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.69 5.02 -51.93 -0.26 0.43 16 31 H 0.09 0.83 7.66 -51.93 -0.40 0.43 16 32 H 0.10 1.02 7.19 -51.93 -0.37 0.65 16 33 H 0.36 4.13 7.45 45.56 0.34 4.47 16 34 H 0.06 0.81 7.88 -51.93 -0.41 0.40 16 35 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 36 H 0.04 0.67 7.98 -51.93 -0.41 0.25 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.08 1.52 6.89 -51.93 -0.36 1.16 16 39 H 0.03 0.81 6.38 -51.93 -0.33 0.48 16 40 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 0.80 7.82 -51.93 -0.41 0.39 16 44 H 0.06 0.68 7.22 -51.93 -0.37 0.31 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -34.45 353.62 -8.76 -43.21 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.62 Total: 1.70 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -1.26 Total: -5.10 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.76 Total: -52.98 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.43 Total: -8.92 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.45 -8.76 -43.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333233298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.332 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds