Wall clock time and date at job start Tue Mar 31 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34124 * 125.98789 * 2 1 4 4 C 1.30500 * 109.25726 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.65527 * 180.02562 * 4 3 2 6 6 N 1.35045 * 108.70004 * 0.02562 * 4 3 2 7 7 C 1.46500 * 126.39953 * 180.02562 * 6 4 3 8 8 C 1.53006 * 109.46998 * 90.02150 * 7 6 4 9 9 H 1.08992 * 109.47046 * 304.99817 * 8 7 6 10 10 O 1.42903 * 109.47256 * 65.00196 * 8 7 6 11 11 C 1.52999 * 109.46811 * 184.99974 * 8 7 6 12 12 N 1.46896 * 109.47091 * 179.97438 * 11 8 7 13 13 C 1.46897 * 111.00058 * 293.95507 * 12 11 8 14 14 C 1.46899 * 111.00397 * 169.99866 * 12 11 8 15 15 C 1.50698 * 109.47536 * 190.00318 * 14 12 11 16 16 H 1.08000 * 119.99924 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99770 * 180.02562 * 15 14 12 18 18 N 1.31512 * 120.00155 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99707 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47026 * 89.99526 * 19 17 15 21 21 H 1.48500 * 109.47111 * 209.99993 * 19 17 15 22 22 H 1.48504 * 109.47089 * 329.99583 * 19 17 15 23 23 C 1.34675 * 125.99200 * 180.26968 * 2 1 3 24 24 C 1.50705 * 126.58933 * 0.05350 * 23 2 1 25 25 H 1.08997 * 109.46759 * 90.02554 * 1 2 3 26 26 H 1.08999 * 109.46765 * 210.02234 * 1 2 3 27 27 H 1.08994 * 109.46878 * 330.02665 * 1 2 3 28 28 H 1.08997 * 109.47288 * 269.96331 * 5 4 3 29 29 H 1.09008 * 109.46732 * 29.95856 * 5 4 3 30 30 H 1.09004 * 109.47586 * 149.95422 * 5 4 3 31 31 H 1.08993 * 109.47452 * 330.02228 * 7 6 4 32 32 H 1.09000 * 109.47175 * 210.02018 * 7 6 4 33 33 H 0.96698 * 113.99763 * 59.99838 * 10 8 7 34 34 H 1.09009 * 109.47170 * 300.00068 * 11 8 7 35 35 H 1.09001 * 109.47273 * 59.99848 * 11 8 7 36 36 H 1.09002 * 109.47131 * 60.00284 * 13 12 11 37 37 H 1.09008 * 109.47223 * 179.97438 * 13 12 11 38 38 H 1.08994 * 109.47370 * 299.99648 * 13 12 11 39 39 H 1.08998 * 109.47062 * 310.00543 * 14 12 11 40 40 H 1.08999 * 109.47126 * 69.99923 * 14 12 11 41 41 H 0.97000 * 119.99855 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.46810 * 270.16257 * 24 23 2 43 43 H 1.09001 * 109.46999 * 30.16154 * 24 23 2 44 44 H 1.08992 * 109.46775 * 150.16660 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7096 0.0006 5 6 4.7387 1.6294 0.0013 6 7 3.5913 -0.6401 0.0004 7 6 4.7997 -1.4684 0.0013 8 6 5.2187 -1.7574 1.4442 9 1 5.3356 -0.8177 1.9838 10 8 4.2158 -2.5512 2.0816 11 6 6.5475 -2.5159 1.4472 12 7 6.9501 -2.7929 2.8325 13 6 7.2564 -1.5485 3.5505 14 6 8.0896 -3.7190 2.8744 15 6 8.3177 -4.1710 4.2938 16 1 7.6802 -3.8064 5.0857 17 6 9.3409 -5.0492 4.5816 18 7 10.1175 -5.4928 3.6174 19 14 9.6241 -5.6090 6.3412 20 1 8.8303 -6.8361 6.6040 21 1 11.0664 -5.8998 6.5421 22 1 9.2007 -4.5358 7.2762 23 6 2.2985 -1.0896 -0.0051 24 6 1.8474 -2.5276 -0.0130 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 5.0274 1.8508 -1.0262 29 1 4.4827 2.5564 0.5146 30 1 5.5692 1.1464 0.5162 31 1 5.6032 -0.9396 -0.5113 32 1 4.5968 -2.4077 -0.5132 33 1 4.0585 -3.4040 1.6538 34 1 6.4306 -3.4558 0.9075 35 1 7.3125 -1.9105 0.9610 36 1 6.3729 -0.9102 3.5644 37 1 7.5511 -1.7825 4.5736 38 1 8.0718 -1.0296 3.0468 39 1 7.8775 -4.5847 2.2471 40 1 8.9823 -3.2135 2.5062 41 1 10.8372 -6.1109 3.8199 42 1 1.7350 -2.8787 1.0127 43 1 0.8912 -2.6055 -0.5305 44 1 2.5896 -3.1383 -0.5269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333233300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:42 Heat of formation + Delta-G solvation = 1.427718 kcal Electronic energy + Delta-G solvation = -22621.827588 eV Core-core repulsion = 19381.940951 eV Total energy + Delta-G solvation = -3239.886637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.22567 -38.25851 -35.75902 -34.14278 -33.20852 -32.59466 -30.41784 -29.64054 -28.57984 -27.24773 -26.37866 -24.50011 -23.63766 -21.77827 -20.41008 -20.10541 -19.51683 -16.98031 -16.42102 -16.25272 -15.85963 -15.27781 -14.87039 -14.40683 -14.25974 -13.97680 -13.83942 -13.53214 -13.45884 -12.93605 -12.80058 -12.71296 -12.58469 -12.36219 -12.23362 -12.12343 -12.01073 -11.96975 -11.49989 -11.28453 -10.99578 -10.90781 -10.71663 -10.51414 -10.26263 -9.92269 -9.84891 -9.39109 -9.11238 -8.49408 -7.96669 -7.32832 -6.08930 -4.10171 2.01330 2.69844 3.08446 3.29048 3.34995 3.39022 4.24959 4.33585 4.38907 4.45591 4.63502 4.71715 4.97103 5.04166 5.15263 5.19772 5.21955 5.27748 5.28397 5.37818 5.40117 5.42880 5.51113 5.66286 5.70802 5.79544 5.86559 5.89924 6.03235 6.07354 6.09931 6.23607 6.45128 6.68182 6.84411 7.15606 7.22251 7.22640 7.71174 7.77571 7.99230 8.09558 8.15400 8.45772 8.97714 9.54499 11.02018 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031025 B = 0.003368 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.269592 B = 8311.453691 C = 8623.081933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.012 4.012 3 N -0.489 5.489 4 C 0.199 3.801 5 C -0.068 4.068 6 N -0.441 5.441 7 C 0.067 3.933 8 C 0.101 3.899 9 H 0.100 0.900 10 O -0.534 6.534 11 C 0.026 3.974 12 N -0.528 5.528 13 C 0.036 3.964 14 C 0.193 3.807 15 C -0.507 4.507 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.900 5.900 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.010 4.010 24 C -0.075 4.075 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.368 0.632 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.010 0.990 39 H 0.028 0.972 40 H -0.010 1.010 41 H 0.261 0.739 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.180 8.742 -10.487 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.140 4.140 3 N -0.209 5.209 4 C -0.062 4.062 5 C -0.126 4.126 6 N -0.124 5.124 7 C -0.056 4.056 8 C 0.040 3.960 9 H 0.118 0.882 10 O -0.338 6.338 11 C -0.104 4.104 12 N -0.252 5.252 13 C -0.112 4.112 14 C 0.069 3.931 15 C -0.546 4.546 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.125 4.125 24 C -0.133 4.133 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.215 0.785 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.028 0.972 39 H 0.047 0.953 40 H 0.008 0.992 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.578 9.634 -9.873 19.356 hybrid contribution 1.515 -1.317 0.027 2.008 sum -12.063 8.317 -9.847 17.653 Atomic orbital electron populations 1.19964 0.88012 1.02387 1.01614 1.20394 0.96137 0.88081 1.09414 1.70064 0.99722 1.30381 1.20716 1.23078 0.95225 0.81479 1.06459 1.20168 0.91649 0.97614 1.03193 1.45063 1.06124 1.06756 1.54427 1.22730 0.86157 0.96406 1.00354 1.22306 0.88190 0.95727 0.89764 0.88211 1.86669 1.57687 1.32576 1.56861 1.22666 0.94886 0.99445 0.93408 1.62014 1.40532 1.12808 1.09825 1.22258 0.97370 0.91061 1.00552 1.19750 0.85151 0.90201 0.98048 1.21152 1.13894 1.26344 0.93190 0.91773 1.24990 0.95844 0.96256 0.97525 1.69952 1.19166 1.32931 1.31917 0.86479 0.77150 0.79130 0.84561 1.20569 1.21311 1.19813 1.20893 0.83271 0.97237 1.11103 1.20231 1.01168 0.88842 1.03087 0.91950 0.91545 0.91484 0.90459 0.89261 0.90900 0.88230 0.88712 0.78517 0.90867 0.95016 0.93607 0.90497 0.97191 0.95348 0.99207 0.92893 0.90212 0.90502 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.05 36.01 0.36 -0.28 16 2 C -0.01 -0.16 7.09 -82.85 -0.59 -0.75 16 3 N -0.49 -7.48 11.25 -7.07 -0.08 -7.56 16 4 C 0.20 2.67 7.90 -155.41 -1.23 1.44 16 5 C -0.07 -0.66 9.97 36.00 0.36 -0.30 16 6 N -0.44 -5.49 2.70 -109.34 -0.30 -5.79 16 7 C 0.07 0.70 5.23 -4.04 -0.02 0.68 16 8 C 0.10 1.33 3.08 -26.73 -0.08 1.24 16 9 H 0.10 1.45 6.55 -51.93 -0.34 1.11 16 10 O -0.53 -7.79 12.71 -35.23 -0.45 -8.24 16 11 C 0.03 0.40 4.62 -3.83 -0.02 0.39 16 12 N -0.53 -10.83 4.62 -244.37 -1.13 -11.96 16 13 C 0.04 0.69 9.14 60.06 0.55 1.24 16 14 C 0.19 4.87 4.72 -4.98 -0.02 4.85 16 15 C -0.51 -14.05 8.46 -34.44 -0.29 -14.34 16 16 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.01 -0.13 6.81 -81.60 -0.56 -0.69 16 24 C -0.08 -0.70 9.49 36.01 0.34 -0.35 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.58 7.81 -51.93 -0.41 0.17 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.07 0.64 7.70 -51.93 -0.40 0.24 16 31 H 0.10 0.87 7.66 -51.93 -0.40 0.48 16 32 H 0.09 0.84 7.19 -51.93 -0.37 0.46 16 33 H 0.37 4.28 9.04 45.56 0.41 4.69 16 34 H 0.07 1.09 7.93 -51.92 -0.41 0.68 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.05 0.78 6.47 -51.93 -0.34 0.44 16 37 H 0.08 1.61 6.76 -51.92 -0.35 1.26 16 38 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.03 0.76 7.93 -51.93 -0.41 0.34 16 40 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.59 7.82 -51.93 -0.41 0.18 16 44 H 0.06 0.49 7.22 -51.93 -0.37 0.11 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -33.53 358.07 -8.82 -42.35 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.69 Total: 0.35 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.29 Total: -5.43 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.77 Total: -50.87 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.45 Total: -8.24 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.53 -8.82 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333233300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.779 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds