Wall clock time and date at job start Tue Mar 31 2020 05:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00227 * 2 1 4 4 H 1.48497 * 109.47205 * 264.86379 * 3 2 1 5 5 H 1.48496 * 109.46810 * 144.86098 * 3 2 1 6 6 H 1.48497 * 109.46864 * 24.86173 * 3 2 1 7 7 C 1.37880 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99522 * 0.93130 * 7 2 1 9 9 C 1.50693 * 120.00104 * 180.92732 * 7 2 1 10 10 C 1.53001 * 115.55303 * 86.44664 * 9 7 2 11 11 N 1.46509 * 109.46836 * 57.52636 * 10 9 7 12 12 C 1.34769 * 119.99774 * 185.10312 * 11 10 9 13 13 O 1.21584 * 120.00499 * 5.05322 * 12 11 10 14 14 N 1.34778 * 119.99826 * 185.05888 * 12 11 10 15 15 C 1.47024 * 125.64835 * 4.46642 * 14 12 11 16 16 C 1.54314 * 107.27519 * 180.97244 * 15 14 12 17 17 C 1.55151 * 102.86818 * 22.52161 * 16 15 14 18 18 H 1.09002 * 111.03616 * 82.39476 * 17 16 15 19 19 C 1.52997 * 111.00727 * 206.23374 * 17 16 15 20 20 C 1.53000 * 109.47286 * 178.65013 * 19 17 16 21 21 N 1.46900 * 109.47116 * 180.02562 * 20 19 17 22 22 C 1.47427 * 125.64918 * 184.77476 * 14 12 11 23 23 C 1.53005 * 117.49969 * 300.77758 * 9 7 2 24 24 C 1.53001 * 117.50029 * 232.11800 * 9 7 2 25 25 H 0.97003 * 120.00056 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47616 * 177.52701 * 10 9 7 27 27 H 1.09000 * 109.47266 * 297.52986 * 10 9 7 28 28 H 0.96995 * 119.99742 * 5.09456 * 11 10 9 29 29 H 1.09007 * 109.88049 * 300.51368 * 15 14 12 30 30 H 1.08995 * 109.88501 * 61.67771 * 15 14 12 31 31 H 1.09004 * 110.91811 * 264.10427 * 16 15 14 32 32 H 1.09000 * 110.74300 * 140.85659 * 16 15 14 33 33 H 1.09005 * 109.46576 * 298.65072 * 19 17 16 34 34 H 1.09003 * 109.47213 * 58.64555 * 19 17 16 35 35 H 1.09000 * 109.46691 * 299.99778 * 20 19 17 36 36 H 1.09001 * 109.46971 * 59.99983 * 20 19 17 37 37 H 1.00903 * 110.99615 * 180.02562 * 21 20 19 38 38 H 1.00907 * 110.99547 * 303.95088 * 21 20 19 39 39 H 1.08996 * 110.36355 * 274.66915 * 22 14 12 40 40 H 1.08994 * 110.36669 * 36.99452 * 22 14 12 41 41 H 1.08999 * 117.49871 * 359.97438 * 23 9 7 42 42 H 1.09000 * 117.49852 * 145.01867 * 23 9 7 43 43 H 1.09002 * 117.50239 * 214.97531 * 24 9 7 44 44 H 1.09003 * 117.49741 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6053 1.9837 -1.3944 5 1 3.4882 1.4738 0.8058 6 1 1.3966 2.6815 0.5886 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0162 9 6 3.5113 -1.1942 0.0206 10 6 4.1519 -1.1205 1.4081 11 7 3.6818 -2.2435 2.2232 12 6 4.0342 -2.3279 3.5213 13 8 4.6648 -1.4269 4.0399 14 7 3.6878 -3.4111 4.2445 15 6 3.0107 -4.6080 3.7244 16 6 2.7980 -5.5676 4.9140 17 6 2.8501 -4.6165 6.1387 18 1 1.8868 -4.1326 6.2996 19 6 3.3016 -5.3641 7.3949 20 6 3.3729 -4.3883 8.5712 21 7 3.8070 -5.1061 9.7772 22 6 3.9193 -3.5894 5.6896 23 6 4.2340 -0.4899 -1.1295 24 6 4.2327 -2.0185 -1.0476 25 1 -0.4850 0.8401 0.0004 26 1 5.2363 -1.1710 1.3108 27 1 3.8734 -0.1820 1.8875 28 1 3.1169 -2.9261 1.8286 29 1 2.0489 -4.3314 3.2923 30 1 3.6339 -5.0882 2.9701 31 1 3.5974 -6.3068 4.9655 32 1 1.8262 -6.0566 4.8466 33 1 2.5879 -6.1560 7.6225 34 1 4.2859 -5.8001 7.2243 35 1 4.0866 -3.5965 8.3436 36 1 2.3886 -3.9524 8.7419 37 1 3.8616 -4.4829 10.5689 38 1 3.1974 -5.8861 9.9728 39 1 4.9205 -3.9816 5.8677 40 1 3.7820 -2.6444 6.2152 41 1 3.6196 -0.0268 -1.9015 42 1 5.1660 0.0257 -0.8976 43 1 5.1639 -2.5079 -0.7621 44 1 3.6174 -2.5603 -1.7660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335559309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:57 Heat of formation + Delta-G solvation = -10.918991 kcal Electronic energy + Delta-G solvation = -22472.183812 eV Core-core repulsion = 19231.761782 eV Total energy + Delta-G solvation = -3240.422031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.96684 -38.07389 -36.92197 -35.43164 -33.39400 -32.14585 -32.02772 -29.68850 -27.49231 -26.16049 -25.05648 -23.44929 -21.93559 -21.68899 -20.37666 -19.47005 -19.18667 -17.66615 -16.77297 -16.31278 -15.68517 -15.40775 -15.18621 -14.97307 -14.52050 -14.23010 -13.89279 -13.60087 -13.24310 -13.11886 -12.74703 -12.69701 -12.52647 -12.20869 -12.08016 -11.97846 -11.61097 -11.15953 -11.05679 -10.78811 -10.71635 -10.69859 -10.47398 -10.17066 -9.78421 -9.56688 -9.16727 -9.03084 -8.67006 -8.57749 -8.49548 -8.00045 -6.15284 -4.19726 3.02262 3.30627 3.40333 3.46248 3.70928 4.11169 4.32501 4.41536 4.53506 4.56800 4.75883 4.94244 4.97505 5.07380 5.15094 5.23475 5.28267 5.32732 5.57119 5.63277 5.71338 5.72530 5.80502 5.82595 5.87947 6.00042 6.03408 6.08620 6.19132 6.28786 6.40714 6.43470 6.59921 6.72497 6.78388 7.01330 7.08257 7.09211 7.27645 7.52433 7.69006 8.41234 8.55881 8.83873 9.14611 9.48274 10.96010 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024587 B = 0.003772 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.527086 B = 7420.807277 C = 7561.348604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.081 3.919 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.258 1.258 6 H -0.295 1.295 7 C -0.489 4.489 8 H 0.077 0.923 9 C -0.016 4.016 10 C 0.173 3.827 11 N -0.715 5.715 12 C 0.718 3.282 13 O -0.603 6.603 14 N -0.642 5.642 15 C 0.099 3.901 16 C -0.123 4.123 17 C -0.104 4.104 18 H 0.085 0.915 19 C -0.104 4.104 20 C 0.056 3.944 21 N -0.853 5.853 22 C 0.133 3.867 23 C -0.194 4.194 24 C -0.179 4.179 25 H 0.265 0.735 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.401 0.599 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.341 0.659 38 H 0.338 0.662 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.180 -12.066 12.501 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.122 4.122 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.182 1.182 6 H -0.222 1.222 7 C -0.526 4.526 8 H 0.095 0.905 9 C -0.017 4.017 10 C 0.049 3.951 11 N -0.368 5.368 12 C 0.420 3.580 13 O -0.482 6.482 14 N -0.381 5.381 15 C -0.024 4.024 16 C -0.161 4.161 17 C -0.123 4.123 18 H 0.103 0.897 19 C -0.142 4.142 20 C -0.075 4.075 21 N -0.382 5.382 22 C 0.010 3.990 23 C -0.232 4.232 24 C -0.216 4.216 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.235 0.765 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.188 -11.327 12.372 17.879 hybrid contribution -0.950 0.945 0.066 1.342 sum 5.237 -10.382 12.438 17.027 Atomic orbital electron populations 1.69880 1.06382 1.27278 1.49732 1.24955 0.94584 0.99163 0.93526 0.86869 0.80511 0.83138 0.78698 1.20232 1.18212 1.22170 1.20145 0.86042 0.94444 1.51988 0.90492 1.19630 0.95242 1.00683 0.86169 1.20986 0.95071 0.88382 0.90682 1.44953 1.54487 1.29008 1.08314 1.15513 0.79947 0.81074 0.81463 1.90864 1.46846 1.39308 1.71225 1.47502 1.64186 1.17096 1.09361 1.21965 0.97644 0.85951 0.96852 1.22638 1.02811 0.97149 0.93455 1.22400 0.99477 0.96172 0.94296 0.89664 1.21487 1.02261 0.97644 0.92801 1.21880 0.98705 0.96614 0.90290 1.58742 1.58517 1.14075 1.06907 1.22034 0.97719 0.98976 0.80289 1.22963 1.01521 0.95012 1.03708 1.22855 1.01137 0.92988 1.04598 0.92499 0.94267 0.91771 0.76473 0.91233 0.91673 0.90497 0.90057 0.91687 0.90711 0.90588 0.95404 0.84638 0.84987 0.91912 0.90851 0.89076 0.90713 0.90890 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 3 Si 0.88 21.82 24.83 -169.99 -4.22 17.59 16 4 H -0.28 -6.63 7.03 56.52 0.40 -6.23 16 5 H -0.26 -6.24 5.79 56.52 0.33 -5.91 16 6 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 7 C -0.49 -12.95 8.96 -34.44 -0.31 -13.26 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 9 C -0.02 -0.36 0.94 -155.66 -0.15 -0.50 16 10 C 0.17 3.81 5.37 -4.04 -0.02 3.79 16 11 N -0.71 -14.47 5.32 -65.22 -0.35 -14.82 16 12 C 0.72 14.57 8.48 -86.92 -0.74 13.83 16 13 O -0.60 -14.36 16.62 5.29 0.09 -14.27 16 14 N -0.64 -10.11 3.33 -176.24 -0.59 -10.70 16 15 C 0.10 1.21 6.22 -3.07 -0.02 1.19 16 16 C -0.12 -1.10 6.42 -24.90 -0.16 -1.26 16 17 C -0.10 -0.99 3.07 -88.47 -0.27 -1.26 16 18 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 19 C -0.10 -0.81 4.99 -26.73 -0.13 -0.95 16 20 C 0.06 0.45 6.63 -3.82 -0.03 0.43 16 21 N -0.85 -6.23 9.62 -10.37 -0.10 -6.33 16 22 C 0.13 1.73 5.55 -2.52 -0.01 1.72 16 23 C -0.19 -4.03 7.64 -26.69 -0.20 -4.23 16 24 C -0.18 -3.46 9.94 -26.69 -0.27 -3.72 16 25 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 27 H 0.06 1.58 6.45 -51.93 -0.33 1.25 16 28 H 0.40 7.59 7.17 -40.82 -0.29 7.30 16 29 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.61 8.04 -51.93 -0.42 0.20 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.08 0.70 7.46 -51.93 -0.39 0.31 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.34 2.06 9.08 -39.29 -0.36 1.71 16 38 H 0.34 1.97 8.99 -39.29 -0.35 1.62 16 39 H 0.06 0.79 8.00 -51.93 -0.42 0.37 16 40 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 41 H 0.09 1.98 7.12 -51.93 -0.37 1.61 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -32.35 349.32 -9.15 -41.51 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.62 Total: 9.69 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.40 Total: -2.07 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.26 Total: -57.72 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.09 Total: -14.27 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.22 Total: 17.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.35 -9.15 -41.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335559309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.587 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds