Wall clock time and date at job start Tue Mar 31 2020 05:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47200 * 240.00011 * 3 2 1 5 5 H 1.48502 * 109.47083 * 120.00385 * 3 2 1 6 6 H 1.48498 * 109.47457 * 0.02562 * 3 2 1 7 7 C 1.37881 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00404 * 185.99009 * 7 2 1 9 9 C 1.50701 * 119.99612 * 5.98659 * 7 2 1 10 10 C 1.52999 * 115.54978 * 275.20432 * 9 7 2 11 11 N 1.46504 * 109.46926 * 304.53658 * 10 9 7 12 12 C 1.34782 * 120.00162 * 174.90709 * 11 10 9 13 13 O 1.21589 * 119.99841 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00015 * 180.02562 * 12 11 10 15 15 C 1.47020 * 125.64917 * 359.68824 * 14 12 11 16 16 C 1.54339 * 107.26660 * 178.85207 * 15 14 12 17 17 C 1.55159 * 103.01858 * 338.14445 * 16 15 14 18 18 H 1.09003 * 111.03981 * 277.21799 * 17 16 15 19 19 C 1.53002 * 111.00641 * 153.38353 * 17 16 15 20 20 C 1.52998 * 109.47256 * 181.35051 * 19 17 16 21 21 N 1.46905 * 109.46777 * 179.97438 * 20 19 17 22 22 C 1.47425 * 125.64681 * 180.02562 * 14 12 11 23 23 C 1.52996 * 117.50045 * 129.53291 * 9 7 2 24 24 C 1.52996 * 117.50018 * 60.87115 * 9 7 2 25 25 H 0.97001 * 120.00086 * 185.35229 * 1 2 3 26 26 H 1.09004 * 109.47786 * 64.53607 * 10 9 7 27 27 H 1.09000 * 109.47271 * 184.53932 * 10 9 7 28 28 H 0.97000 * 119.99948 * 354.90979 * 11 10 9 29 29 H 1.08989 * 109.88761 * 298.39721 * 15 14 12 30 30 H 1.08996 * 109.88008 * 59.56853 * 15 14 12 31 31 H 1.09002 * 110.85303 * 219.67665 * 16 15 14 32 32 H 1.09001 * 110.52003 * 96.45150 * 16 15 14 33 33 H 1.09002 * 109.46911 * 301.34838 * 19 17 16 34 34 H 1.08995 * 109.47185 * 61.34478 * 19 17 16 35 35 H 1.09002 * 109.46986 * 299.99740 * 20 19 17 36 36 H 1.08995 * 109.47491 * 59.99614 * 20 19 17 37 37 H 1.00903 * 110.99546 * 179.97438 * 21 20 19 38 38 H 1.00894 * 110.99639 * 303.94875 * 21 20 19 39 39 H 1.09002 * 110.36995 * 322.92770 * 22 14 12 40 40 H 1.09006 * 110.37063 * 85.13936 * 22 14 12 41 41 H 1.08999 * 117.49637 * 359.97438 * 23 9 7 42 42 H 1.08998 * 117.49888 * 145.02085 * 23 9 7 43 43 H 1.09005 * 117.50223 * 214.97733 * 24 9 7 44 44 H 1.08998 * 117.50272 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2841 2.7465 0.0006 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1966 0.0971 9 6 1.2573 -2.4955 -0.1372 10 6 0.6977 -3.0749 1.1636 11 7 1.7820 -3.2256 2.1372 12 6 1.5076 -3.6238 3.3953 13 8 0.3601 -3.8575 3.7223 14 7 2.5050 -3.7619 4.2910 15 6 3.9312 -3.5190 4.0296 16 6 4.6891 -3.7755 5.3494 17 6 3.5837 -3.6084 6.4253 18 1 3.4342 -2.5575 6.6729 19 6 3.9107 -4.4228 7.6787 20 6 2.7842 -4.2598 8.7011 21 7 3.0980 -5.0422 9.9042 22 6 2.3474 -4.1882 5.6935 23 6 1.7475 -3.4837 -1.1974 24 6 0.4435 -2.7121 -1.4146 25 1 -0.4850 -0.8364 0.0784 26 1 -0.0600 -2.4019 1.5649 27 1 0.2501 -4.0487 0.9647 28 1 2.6974 -3.0388 1.8764 29 1 4.2877 -4.2000 3.2569 30 1 4.0796 -2.4864 3.7139 31 1 5.4803 -3.0395 5.4918 32 1 5.0944 -4.7872 5.3669 33 1 4.0103 -5.4751 7.4125 34 1 4.8466 -4.0668 8.1093 35 1 2.6846 -3.2075 8.9673 36 1 1.8483 -4.6158 8.2704 37 1 2.3686 -4.9506 10.5954 38 1 3.2585 -6.0112 9.6736 39 1 1.4300 -3.7767 6.1143 40 1 2.3400 -5.2762 5.7608 41 1 2.6103 -3.1923 -1.7963 42 1 1.6711 -4.5466 -0.9683 43 1 -0.4904 -3.2677 -1.3284 44 1 0.4482 -1.9131 -2.1559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335559604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:59 Heat of formation + Delta-G solvation = -20.683640 kcal Electronic energy + Delta-G solvation = -22491.291830 eV Core-core repulsion = 19250.446372 eV Total energy + Delta-G solvation = -3240.845457 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.97200 -38.05445 -36.86736 -35.43149 -33.37580 -32.06792 -31.90354 -29.70014 -27.43958 -25.74992 -24.80863 -23.45989 -21.93710 -21.34209 -20.42229 -19.64604 -19.36369 -17.79173 -16.67588 -16.33896 -16.05124 -15.34353 -15.08571 -14.77619 -14.33440 -14.09578 -13.77409 -13.39290 -13.28503 -13.11171 -12.87937 -12.67904 -12.45919 -12.31254 -12.18079 -11.64269 -11.47767 -11.01635 -10.96772 -10.83458 -10.79700 -10.79369 -10.47982 -10.15154 -9.79180 -9.54411 -9.02514 -8.72160 -8.55462 -8.49587 -8.37888 -7.97758 -6.38090 -4.15422 3.02275 3.39627 3.40476 3.59699 3.72486 4.09952 4.34105 4.46736 4.53515 4.63029 4.64840 4.97338 5.07144 5.14659 5.20604 5.28010 5.29320 5.32553 5.47213 5.61643 5.70534 5.78123 5.83208 5.84869 5.86164 5.99341 6.14532 6.15529 6.25411 6.39438 6.42887 6.54320 6.68791 6.77492 6.85935 7.07825 7.17444 7.20476 7.33476 7.53374 8.16734 8.32828 8.57354 8.81299 9.15767 9.60604 10.99750 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.003922 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.178449 B = 7137.236084 C = 7660.274194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.030 3.970 3 Si 1.064 2.936 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.575 4.575 8 H 0.052 0.948 9 C 0.005 3.995 10 C 0.177 3.823 11 N -0.713 5.713 12 C 0.717 3.283 13 O -0.603 6.603 14 N -0.642 5.642 15 C 0.099 3.901 16 C -0.122 4.122 17 C -0.103 4.103 18 H 0.087 0.913 19 C -0.103 4.103 20 C 0.056 3.944 21 N -0.854 5.854 22 C 0.133 3.867 23 C -0.195 4.195 24 C -0.170 4.170 25 H 0.276 0.724 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.398 0.602 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.341 0.659 38 H 0.339 0.661 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.422 -8.950 12.894 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.893 3.107 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.613 4.613 8 H 0.070 0.930 9 C 0.004 3.996 10 C 0.053 3.947 11 N -0.365 5.365 12 C 0.418 3.582 13 O -0.483 6.483 14 N -0.382 5.382 15 C -0.024 4.024 16 C -0.160 4.160 17 C -0.122 4.122 18 H 0.106 0.894 19 C -0.142 4.142 20 C -0.075 4.075 21 N -0.383 5.383 22 C 0.009 3.991 23 C -0.232 4.232 24 C -0.208 4.208 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.232 0.768 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.898 -6.962 13.011 17.231 hybrid contribution -0.237 -2.101 -0.405 2.153 sum 8.661 -9.063 12.606 17.778 Atomic orbital electron populations 1.70714 1.06868 1.31548 1.44026 1.25746 0.96507 1.02232 0.93160 0.83616 0.74999 0.75683 0.76429 1.21466 1.21530 1.20775 1.21141 0.93707 0.89705 1.56702 0.93025 1.19326 0.99130 0.95449 0.85688 1.20870 0.88038 0.97501 0.88320 1.44989 1.11993 1.70610 1.08924 1.15546 0.83404 0.78599 0.80604 1.90865 1.18922 1.59398 1.79093 1.47500 1.06050 1.73215 1.11404 1.21967 0.81226 1.01406 0.97848 1.22645 0.97448 1.02647 0.93297 1.22396 0.94973 1.00693 0.94185 0.89445 1.21484 0.99095 0.99995 0.93580 1.21872 0.96640 0.98809 0.90184 1.58738 1.51039 1.15500 1.13049 1.22032 0.98345 0.98406 0.80304 1.22918 0.98138 0.95517 1.06628 1.22726 0.93060 1.02164 1.02856 0.91301 0.91978 0.94735 0.76756 0.91783 0.91286 0.89938 0.90620 0.91815 0.90615 0.90866 0.95054 0.84644 0.84887 0.90785 0.92333 0.90081 0.91435 0.91335 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.46 55.43 0.75 -25.43 16 2 C 0.03 0.83 5.39 -17.82 -0.10 0.73 16 3 Si 1.06 24.32 29.91 -169.99 -5.08 19.23 16 4 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.58 -15.04 8.26 -34.44 -0.28 -15.32 16 8 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 9 C 0.00 0.12 1.03 -155.66 -0.16 -0.04 16 10 C 0.18 4.12 5.49 -4.04 -0.02 4.09 16 11 N -0.71 -14.95 5.32 -65.22 -0.35 -15.29 16 12 C 0.72 14.93 8.49 -86.92 -0.74 14.20 16 13 O -0.60 -14.74 16.59 5.29 0.09 -14.65 16 14 N -0.64 -10.31 3.33 -176.22 -0.59 -10.89 16 15 C 0.10 1.23 6.15 -3.06 -0.02 1.21 16 16 C -0.12 -1.11 6.42 -24.89 -0.16 -1.27 16 17 C -0.10 -0.99 3.08 -88.46 -0.27 -1.26 16 18 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.10 -0.82 4.99 -26.73 -0.13 -0.95 16 20 C 0.06 0.45 6.64 -3.82 -0.03 0.43 16 21 N -0.85 -6.28 9.62 -10.37 -0.10 -6.38 16 22 C 0.13 1.74 5.56 -2.52 -0.01 1.72 16 23 C -0.19 -4.07 9.93 -26.70 -0.27 -4.34 16 24 C -0.17 -3.84 8.90 -26.70 -0.24 -4.08 16 25 H 0.28 8.05 6.13 -40.82 -0.25 7.80 16 26 H 0.06 1.64 7.51 -51.93 -0.39 1.25 16 27 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 28 H 0.40 7.78 7.14 -40.82 -0.29 7.49 16 29 H 0.06 0.75 8.14 -51.94 -0.42 0.33 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 33 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.27 7.46 -51.93 -0.39 -0.12 16 37 H 0.34 2.08 9.08 -39.29 -0.36 1.72 16 38 H 0.34 2.10 8.99 -39.29 -0.35 1.74 16 39 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 40 H 0.06 0.72 8.01 -51.93 -0.42 0.31 16 41 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -31.96 355.62 -9.90 -41.86 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -7.55 Total: 11.08 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.43 Total: -4.88 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.29 Total: -57.99 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.08 Total: 19.23 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.96 -9.90 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335559604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.177 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds