Wall clock time and date at job start Tue Mar 31 2020 05:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47200 * 240.00011 * 3 2 1 5 5 H 1.48502 * 109.47083 * 120.00385 * 3 2 1 6 6 H 1.48498 * 109.47457 * 0.02562 * 3 2 1 7 7 C 1.37881 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00404 * 185.99009 * 7 2 1 9 9 C 1.50701 * 119.99612 * 5.98659 * 7 2 1 10 10 C 1.52999 * 115.54978 * 275.20432 * 9 7 2 11 11 N 1.46504 * 109.46926 * 304.53658 * 10 9 7 12 12 C 1.34782 * 120.00162 * 174.90709 * 11 10 9 13 13 O 1.21589 * 119.99841 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00015 * 180.02562 * 12 11 10 15 15 C 1.47020 * 125.64917 * 359.68824 * 14 12 11 16 16 C 1.54339 * 107.26660 * 178.85207 * 15 14 12 17 17 C 1.55159 * 103.01858 * 338.14445 * 16 15 14 18 18 H 1.09003 * 111.03981 * 277.21799 * 17 16 15 19 19 C 1.53002 * 111.00641 * 153.38353 * 17 16 15 20 20 C 1.52998 * 109.47256 * 181.35051 * 19 17 16 21 21 N 1.46905 * 109.46777 * 179.97438 * 20 19 17 22 22 C 1.47425 * 125.64681 * 180.02562 * 14 12 11 23 23 C 1.52996 * 117.50045 * 129.53291 * 9 7 2 24 24 C 1.52996 * 117.50018 * 60.87115 * 9 7 2 25 25 H 0.97001 * 120.00086 * 185.35229 * 1 2 3 26 26 H 1.09004 * 109.47786 * 64.53607 * 10 9 7 27 27 H 1.09000 * 109.47271 * 184.53932 * 10 9 7 28 28 H 0.97000 * 119.99948 * 354.90979 * 11 10 9 29 29 H 1.08989 * 109.88761 * 298.39721 * 15 14 12 30 30 H 1.08996 * 109.88008 * 59.56853 * 15 14 12 31 31 H 1.09002 * 110.85303 * 219.67665 * 16 15 14 32 32 H 1.09001 * 110.52003 * 96.45150 * 16 15 14 33 33 H 1.09002 * 109.46911 * 301.34838 * 19 17 16 34 34 H 1.08995 * 109.47185 * 61.34478 * 19 17 16 35 35 H 1.09002 * 109.46986 * 299.99740 * 20 19 17 36 36 H 1.08995 * 109.47491 * 59.99614 * 20 19 17 37 37 H 1.00903 * 110.99546 * 179.97438 * 21 20 19 38 38 H 1.00894 * 110.99639 * 303.94875 * 21 20 19 39 39 H 1.09002 * 110.36995 * 322.92770 * 22 14 12 40 40 H 1.09006 * 110.37063 * 85.13936 * 22 14 12 41 41 H 1.08999 * 117.49637 * 359.97438 * 23 9 7 42 42 H 1.08998 * 117.49888 * 145.02085 * 23 9 7 43 43 H 1.09005 * 117.50223 * 214.97733 * 24 9 7 44 44 H 1.08998 * 117.50272 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1029 1.6964 1.2125 6 1 1.2841 2.7465 0.0006 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1966 0.0971 9 6 1.2573 -2.4955 -0.1372 10 6 0.6977 -3.0749 1.1636 11 7 1.7820 -3.2256 2.1372 12 6 1.5076 -3.6238 3.3953 13 8 0.3601 -3.8575 3.7223 14 7 2.5050 -3.7619 4.2910 15 6 3.9312 -3.5190 4.0296 16 6 4.6891 -3.7755 5.3494 17 6 3.5837 -3.6084 6.4253 18 1 3.4342 -2.5575 6.6729 19 6 3.9107 -4.4228 7.6787 20 6 2.7842 -4.2598 8.7011 21 7 3.0980 -5.0422 9.9042 22 6 2.3474 -4.1882 5.6935 23 6 1.7475 -3.4837 -1.1974 24 6 0.4435 -2.7121 -1.4146 25 1 -0.4850 -0.8364 0.0784 26 1 -0.0600 -2.4019 1.5649 27 1 0.2501 -4.0487 0.9647 28 1 2.6974 -3.0388 1.8764 29 1 4.2877 -4.2000 3.2569 30 1 4.0796 -2.4864 3.7139 31 1 5.4803 -3.0395 5.4918 32 1 5.0944 -4.7872 5.3669 33 1 4.0103 -5.4751 7.4125 34 1 4.8466 -4.0668 8.1093 35 1 2.6846 -3.2075 8.9673 36 1 1.8483 -4.6158 8.2704 37 1 2.3686 -4.9506 10.5954 38 1 3.2585 -6.0112 9.6736 39 1 1.4300 -3.7767 6.1143 40 1 2.3400 -5.2762 5.7608 41 1 2.6103 -3.1923 -1.7963 42 1 1.6711 -4.5466 -0.9683 43 1 -0.4904 -3.2677 -1.3284 44 1 0.4482 -1.9131 -2.1559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335559604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:59 Heat of formation + Delta-G solvation = -42.909070 kcal Electronic energy + Delta-G solvation = -22492.255597 eV Core-core repulsion = 19250.446372 eV Total energy + Delta-G solvation = -3241.809224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36103 -39.41245 -38.54767 -36.26984 -35.07897 -33.96356 -33.06507 -30.62008 -28.70236 -27.26520 -26.68225 -24.57880 -23.11106 -22.74356 -21.56820 -21.24813 -20.82006 -19.32507 -18.38281 -17.55565 -17.00579 -16.62330 -16.35542 -16.08602 -15.62818 -15.50329 -15.16816 -14.87382 -14.70123 -14.44881 -14.22558 -14.03232 -13.88304 -13.53246 -13.17116 -13.14032 -12.84632 -12.61041 -12.23789 -12.21188 -11.96917 -11.80907 -11.62891 -11.56236 -11.54688 -11.32221 -10.59103 -10.52703 -10.33653 -10.11434 -9.61685 -9.47454 -8.51771 -6.28940 1.54848 1.61162 1.61654 1.79722 2.09799 2.59098 2.98806 3.22910 3.31637 3.46141 3.62097 3.70497 3.94799 4.05060 4.22956 4.26938 4.34159 4.41044 4.43224 4.44829 4.52228 4.56129 4.64422 4.74391 4.78284 4.82966 4.85925 4.94013 5.04258 5.05041 5.12567 5.25044 5.29797 5.35072 5.42599 5.44495 5.59665 6.06971 6.12354 6.21639 6.25559 6.58693 6.67992 7.00581 7.52976 7.55231 8.85968 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.003922 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.178449 B = 7137.236084 C = 7660.274194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.020 4.020 3 Si 1.108 2.892 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.293 1.293 7 C -0.573 4.573 8 H 0.054 0.946 9 C -0.020 4.020 10 C 0.192 3.808 11 N -0.710 5.710 12 C 0.708 3.292 13 O -0.648 6.648 14 N -0.639 5.639 15 C 0.090 3.910 16 C -0.110 4.110 17 C -0.090 4.090 18 H 0.082 0.918 19 C -0.092 4.092 20 C 0.055 3.945 21 N -0.858 5.858 22 C 0.126 3.874 23 C -0.162 4.162 24 C -0.176 4.176 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.039 0.961 28 H 0.406 0.594 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.348 0.652 38 H 0.347 0.653 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.412 -9.818 13.601 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.220 4.220 3 Si 0.931 3.069 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.219 1.219 7 C -0.611 4.611 8 H 0.072 0.928 9 C -0.021 4.021 10 C 0.067 3.933 11 N -0.363 5.363 12 C 0.410 3.590 13 O -0.531 6.531 14 N -0.377 5.377 15 C -0.033 4.033 16 C -0.147 4.147 17 C -0.110 4.110 18 H 0.100 0.900 19 C -0.131 4.131 20 C -0.076 4.076 21 N -0.388 5.388 22 C 0.003 3.997 23 C -0.199 4.199 24 C -0.214 4.214 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.241 0.759 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.097 0.903 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.963 -7.858 13.742 19.842 hybrid contribution -1.158 -1.893 -0.584 2.294 sum 10.805 -9.750 13.158 19.620 Atomic orbital electron populations 1.70826 1.08014 1.30841 1.46990 1.27026 0.96513 1.05810 0.92690 0.83051 0.74175 0.71934 0.77760 1.19483 1.19794 1.21912 1.21440 0.93949 0.90687 1.55022 0.92751 1.19321 1.00538 0.95940 0.86278 1.20511 0.87817 0.96516 0.88441 1.44820 1.11689 1.70861 1.08928 1.15768 0.83761 0.78499 0.80982 1.90822 1.21177 1.61277 1.79872 1.47588 1.06823 1.71660 1.11649 1.22275 0.79229 1.01363 1.00401 1.22668 0.97027 1.04586 0.90435 1.22325 0.93384 1.00466 0.94846 0.89977 1.21400 0.99125 1.00199 0.92336 1.21836 0.96471 0.98611 0.90678 1.58737 1.51304 1.16001 1.12748 1.22277 0.99302 0.99103 0.78984 1.22931 0.97029 0.96170 1.03795 1.22667 0.94644 1.02358 1.01737 0.92691 0.96218 0.94250 0.75872 0.90665 0.91961 0.87721 0.88620 0.90830 0.89612 0.91506 0.96070 0.83957 0.84061 0.93014 0.91302 0.89353 0.88947 0.90265 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.46 21.45 0.29 -55.45 16 2 C -0.02 -1.10 5.39 84.66 0.46 -0.65 16 3 Si 1.11 48.73 29.91 68.60 2.05 50.78 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.57 -29.83 8.26 25.60 0.21 -29.62 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 9 C -0.02 -0.94 1.03 -52.93 -0.05 -0.99 16 10 C 0.19 9.13 5.49 86.38 0.47 9.60 16 11 N -0.71 -29.91 5.32 -478.52 -2.54 -32.45 16 12 C 0.71 29.94 8.49 179.05 1.52 31.46 16 13 O -0.65 -32.80 16.59 -4.00 -0.07 -32.87 16 14 N -0.64 -20.13 3.33 -829.71 -2.76 -22.89 16 15 C 0.09 2.03 6.15 86.73 0.53 2.57 16 16 C -0.11 -1.60 6.42 31.79 0.20 -1.40 16 17 C -0.09 -1.54 3.08 -9.39 -0.03 -1.57 16 18 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 19 C -0.09 -1.21 4.99 30.59 0.15 -1.06 16 20 C 0.05 0.82 6.64 86.30 0.57 1.39 16 21 N -0.86 -11.08 9.62 -186.71 -1.80 -12.88 16 22 C 0.13 3.20 5.56 86.86 0.48 3.69 16 23 C -0.16 -6.46 9.93 30.62 0.30 -6.16 16 24 C -0.18 -7.93 8.90 30.62 0.27 -7.66 16 25 H 0.26 15.99 6.13 -92.71 -0.57 15.42 16 26 H 0.02 1.09 7.51 -2.39 -0.02 1.07 16 27 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 28 H 0.41 15.58 7.14 -92.71 -0.66 14.91 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 1.09 8.04 -2.39 -0.02 1.07 16 33 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.02 0.36 7.46 -2.39 -0.02 0.34 16 37 H 0.35 3.77 9.08 -89.69 -0.81 2.96 16 38 H 0.35 3.58 8.99 -89.70 -0.81 2.78 16 39 H 0.05 1.54 7.96 -2.39 -0.02 1.52 16 40 H 0.07 1.62 8.01 -2.38 -0.02 1.60 16 41 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 42 H 0.09 3.24 8.14 -2.39 -0.02 3.23 16 43 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 44 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -70.72 355.62 -0.80 -71.53 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -1.08 Total: 34.63 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 5.10 Total: -0.40 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -6.81 Total: -123.68 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.07 Total: -32.87 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.05 Total: 50.78 kcal Total: -70.72 -0.80 -71.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335559604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.618 kcal (2) G-P(sol) polarization free energy of solvation -70.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds