Wall clock time and date at job start Tue Mar 31 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 113.99692 * 2 1 4 4 N 1.46504 * 109.47048 * 180.02562 * 3 2 1 5 5 N 1.40082 * 126.03923 * 275.67203 * 4 3 2 6 6 C 1.30839 * 108.20554 * 179.73607 * 5 4 3 7 7 C 1.39865 * 108.20332 * 0.43716 * 6 5 4 8 8 C 1.50695 * 126.04249 * 179.81812 * 7 6 5 9 9 C 1.34955 * 126.03543 * 95.68384 * 4 3 2 10 10 C 1.50694 * 126.12754 * 359.97100 * 9 4 3 11 11 N 1.46898 * 109.47454 * 97.58102 * 10 9 4 12 12 C 1.46903 * 110.99976 * 164.99288 * 11 10 9 13 13 C 1.50706 * 109.47122 * 198.50193 * 12 11 10 14 14 H 1.08001 * 119.99856 * 4.18638 * 13 12 11 15 15 C 1.37872 * 119.99790 * 184.18166 * 13 12 11 16 16 N 1.31509 * 120.00413 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99950 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47123 * 59.99727 * 17 15 13 19 19 H 1.48500 * 109.47359 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47286 * 300.00656 * 17 15 13 21 21 C 1.46897 * 111.00193 * 288.94806 * 11 10 9 22 22 C 1.53005 * 109.46898 * 170.38148 * 21 11 10 23 23 C 1.52994 * 109.47081 * 290.38030 * 21 11 10 24 24 H 1.08998 * 109.48006 * 59.99966 * 1 2 3 25 25 H 1.09003 * 109.47334 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47209 * 299.99916 * 1 2 3 27 27 H 1.08994 * 109.47583 * 60.00622 * 3 2 1 28 28 H 1.08996 * 109.47122 * 299.99919 * 3 2 1 29 29 H 1.07997 * 125.89865 * 180.25514 * 6 5 4 30 30 H 1.09000 * 109.47527 * 269.69035 * 8 7 6 31 31 H 1.08999 * 109.47216 * 149.68712 * 8 7 6 32 32 H 1.09004 * 109.46914 * 29.69084 * 8 7 6 33 33 H 1.09001 * 109.47388 * 217.58353 * 10 9 4 34 34 H 1.08998 * 109.47493 * 337.58103 * 10 9 4 35 35 H 1.08999 * 109.47001 * 318.50175 * 12 11 10 36 36 H 1.08997 * 109.47126 * 78.50452 * 12 11 10 37 37 H 0.96999 * 120.00209 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.46823 * 50.38348 * 21 11 10 39 39 H 1.09002 * 109.47031 * 69.69546 * 22 21 11 40 40 H 1.09000 * 109.46886 * 189.69039 * 22 21 11 41 41 H 1.08992 * 109.47237 * 309.68805 * 22 21 11 42 42 H 1.09004 * 109.47341 * 55.16948 * 23 21 11 43 43 H 1.09004 * 109.47337 * 175.17039 * 23 21 11 44 44 H 1.08998 * 109.47646 * 295.16931 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 7 3.4706 1.1898 -0.0006 5 7 4.2838 1.0130 1.1262 6 6 5.5279 0.9486 0.7264 7 6 5.5478 1.0922 -0.6647 8 6 6.7747 1.0827 -1.5397 9 6 4.2701 1.2351 -1.0869 10 6 3.8206 1.4128 -2.5142 11 7 3.9556 2.8243 -2.8980 12 6 3.8729 2.9836 -4.3561 13 6 4.4533 4.3176 -4.7494 14 1 4.9055 4.9515 -4.0010 15 6 4.4070 4.7287 -6.0646 16 7 3.8560 3.9570 -6.9758 17 14 5.1258 6.3826 -6.5520 18 1 6.5725 6.4116 -6.2177 19 1 4.9516 6.5870 -8.0125 20 1 4.4255 7.4638 -5.8132 21 6 2.9496 3.6528 -2.2201 22 6 3.2669 5.1316 -2.4516 23 6 1.5632 3.3344 -2.7832 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8463 -0.8900 29 1 6.3908 0.8114 1.3612 30 1 7.1511 2.0998 -1.6488 31 1 6.5183 0.6830 -2.5207 32 1 7.5423 0.4584 -1.0823 33 1 4.4378 0.7976 -3.1689 34 1 2.7779 1.1092 -2.6072 35 1 4.4350 2.1856 -4.8412 36 1 2.8298 2.9350 -4.6683 37 1 3.8232 4.2465 -7.9010 38 1 2.9651 3.4409 -1.1510 39 1 3.0842 5.3832 -3.4963 40 1 2.6297 5.7440 -1.8136 41 1 4.3126 5.3210 -2.2097 42 1 1.3723 2.2648 -2.6959 43 1 0.8080 3.8852 -2.2225 44 1 1.5213 3.6264 -3.8325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336672938.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:47 Heat of formation + Delta-G solvation = 48.256689 kcal Electronic energy + Delta-G solvation = -23665.631548 eV Core-core repulsion = 20427.775567 eV Total energy + Delta-G solvation = -3237.855981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13837 -38.02275 -37.76210 -32.91728 -32.77079 -32.17679 -30.40893 -28.32189 -27.48300 -26.60127 -26.03451 -24.73535 -24.14398 -22.27865 -20.64902 -19.56756 -18.40674 -16.99760 -16.84087 -16.29499 -15.95601 -15.40824 -14.84562 -14.63838 -14.30049 -13.96446 -13.59151 -13.26664 -13.09753 -13.01482 -12.42940 -12.35881 -12.24638 -12.10908 -11.66871 -11.60170 -11.44031 -11.34696 -11.17110 -10.91102 -10.75025 -10.73429 -10.39149 -10.32935 -10.24820 -9.93570 -9.52419 -9.17064 -9.08909 -8.41124 -7.95532 -7.31182 -6.03906 -4.01183 1.99519 2.49051 3.10467 3.31844 3.36826 3.39808 3.85146 4.40652 4.56702 4.82260 4.85431 5.01622 5.08429 5.10574 5.24474 5.30443 5.40534 5.42993 5.56176 5.66314 5.69589 5.81662 5.88401 5.96129 6.13445 6.19702 6.26627 6.39701 6.49429 6.50831 6.61961 6.62595 6.71298 6.88126 7.00438 7.12817 7.30798 7.34530 7.40735 7.80706 7.96112 8.06688 8.12593 8.49075 9.03351 9.59064 11.06468 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.005424 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.492373 B = 5160.968373 C = 5916.117046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.405 6.405 3 C 0.302 3.698 4 N -0.371 5.371 5 N -0.300 5.300 6 C 0.052 3.948 7 C -0.222 4.222 8 C -0.065 4.065 9 C 0.117 3.883 10 C 0.109 3.891 11 N -0.518 5.518 12 C 0.186 3.814 13 C -0.499 4.499 14 H 0.072 0.928 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.088 3.912 22 C -0.140 4.140 23 C -0.191 4.191 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.180 0.820 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.036 0.964 35 H 0.025 0.975 36 H 0.009 0.991 37 H 0.261 0.739 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.027 0.973 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.048 0.952 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 -5.257 11.730 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.323 6.323 3 C 0.142 3.858 4 N -0.158 5.158 5 N -0.119 5.119 6 C -0.135 4.135 7 C -0.233 4.233 8 C -0.123 4.123 9 C -0.009 4.009 10 C -0.021 4.021 11 N -0.243 5.243 12 C 0.062 3.938 13 C -0.538 4.538 14 H 0.090 0.910 15 C -0.147 4.147 16 N -0.540 5.540 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.021 4.021 22 C -0.197 4.197 23 C -0.250 4.250 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.197 0.803 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.385 -5.292 12.670 14.414 hybrid contribution -0.190 0.741 -1.198 1.421 sum -4.575 -4.551 11.472 13.163 Atomic orbital electron populations 1.22714 0.79142 1.03446 1.00460 1.87869 1.20677 1.28308 1.95481 1.22399 0.75497 0.85175 1.02752 1.48209 1.04934 1.58222 1.04399 1.77260 1.02070 1.24187 1.08421 1.23749 0.95007 0.99966 0.94750 1.19851 0.94606 1.14964 0.93923 1.20001 0.92922 1.01834 0.97565 1.20993 0.90642 0.99008 0.90219 1.20705 0.99205 0.93567 0.88578 1.62385 1.47401 1.02623 1.11874 1.19902 0.96535 0.97907 0.79477 1.21302 1.36807 1.02562 0.93112 0.90958 1.24959 0.95818 0.97374 0.96554 1.69938 1.45087 1.37118 1.01874 0.86643 0.79853 0.84231 0.77205 1.20189 1.21522 1.20296 1.21499 0.88911 0.95619 0.96084 1.22132 1.00543 0.93063 1.03938 1.22587 0.98595 0.99734 1.04064 0.93426 0.88971 0.93593 0.90247 0.88927 0.80309 0.91552 0.92023 0.92819 0.88629 0.94609 0.95686 0.97336 0.92967 0.93064 0.88799 0.95401 0.92415 0.93947 0.93284 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.48 16 2 O -0.41 -5.77 10.93 -35.23 -0.39 -6.16 16 3 C 0.30 4.32 6.26 59.85 0.37 4.70 16 4 N -0.37 -6.28 3.64 -61.90 -0.23 -6.50 16 5 N -0.30 -5.16 12.58 30.62 0.39 -4.78 16 6 C 0.05 0.80 11.96 -17.37 -0.21 0.60 16 7 C -0.22 -3.65 6.10 -105.06 -0.64 -4.29 16 8 C -0.07 -0.95 10.15 36.00 0.37 -0.59 16 9 C 0.12 2.03 5.58 -82.26 -0.46 1.57 16 10 C 0.11 1.96 4.72 -4.98 -0.02 1.94 16 11 N -0.52 -10.41 4.44 -229.52 -1.02 -11.43 16 12 C 0.19 4.43 4.51 -4.97 -0.02 4.41 16 13 C -0.50 -12.88 6.59 -34.44 -0.23 -13.11 16 14 H 0.07 1.86 5.65 -52.49 -0.30 1.56 16 15 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 16 N -0.90 -25.42 13.29 55.43 0.74 -24.69 16 17 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.09 1.61 2.41 -67.71 -0.16 1.44 16 22 C -0.14 -2.67 7.71 37.16 0.29 -2.38 16 23 C -0.19 -3.19 7.44 37.15 0.28 -2.92 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.28 3.55 -51.93 -0.18 1.10 16 29 H 0.18 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.93 7.31 -51.93 -0.38 0.55 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.71 6.98 -51.93 -0.36 1.35 16 34 H 0.04 0.63 5.40 -51.93 -0.28 0.35 16 35 H 0.03 0.64 7.69 -51.93 -0.40 0.25 16 36 H 0.01 0.22 5.56 -51.93 -0.29 -0.07 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.05 0.91 5.68 -51.93 -0.29 0.61 16 39 H 0.09 2.04 5.76 -51.93 -0.30 1.74 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.16 7.33 -51.93 -0.38 0.78 16 42 H 0.04 0.66 5.14 -51.93 -0.27 0.39 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.58 6.29 -51.93 -0.33 1.26 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -30.07 339.44 -6.54 -36.61 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.70 Total: 1.83 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 0.57 Total: -5.80 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.12 Total: -47.39 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.39 Total: -6.16 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.07 -6.54 -36.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336672938.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.862 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds