Wall clock time and date at job start Tue Mar 31 2020 05:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.50882 * 2 1 4 4 C 1.53102 * 109.50687 * 239.91414 * 2 1 3 5 5 N 1.47010 * 109.25851 * 183.21738 * 4 2 1 6 6 C 1.46901 * 110.99887 * 182.38930 * 5 4 2 7 7 C 1.53004 * 109.46916 * 169.99880 * 6 5 4 8 8 N 1.46901 * 109.46916 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47496 * 54.99761 * 10 9 8 12 12 C 1.47201 * 109.47245 * 294.99938 * 10 9 8 13 13 N 9.27155 * 131.29141 * 224.25232 * 2 1 3 14 14 C 1.53004 * 109.47435 * 175.00361 * 10 9 8 15 15 C 1.50695 * 109.47384 * 185.00247 * 14 10 9 16 16 H 1.08004 * 120.00169 * 359.97438 * 15 14 10 17 17 C 1.37879 * 119.99793 * 179.97438 * 15 14 10 18 18 N 1.31520 * 119.99740 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00032 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47368 * 90.00334 * 19 17 15 21 21 H 1.48505 * 109.47067 * 210.00021 * 19 17 15 22 22 H 1.48505 * 109.47434 * 330.00013 * 19 17 15 23 23 C 1.47021 * 110.75436 * 58.61347 * 5 4 2 24 24 C 1.53095 * 109.25933 * 301.38601 * 23 5 4 25 25 O 1.43019 * 109.25861 * 56.84596 * 24 23 5 26 26 H 1.08995 * 109.47229 * 180.08789 * 1 2 3 27 27 H 1.08995 * 109.46899 * 300.08711 * 1 2 3 28 28 H 1.09004 * 109.47098 * 60.08782 * 1 2 3 29 29 H 1.08995 * 109.50583 * 63.28302 * 4 2 1 30 30 H 1.09002 * 109.50265 * 303.14959 * 4 2 1 31 31 H 1.08995 * 109.47185 * 50.00588 * 6 5 4 32 32 H 1.08996 * 109.47094 * 289.99512 * 6 5 4 33 33 H 1.09004 * 109.46889 * 60.00381 * 7 6 5 34 34 H 1.08995 * 109.47384 * 300.00021 * 7 6 5 35 35 H 1.00901 * 111.00067 * 303.95263 * 8 7 6 36 36 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 37 37 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 38 38 H 1.09001 * 109.46592 * 304.99966 * 14 10 9 39 39 H 1.09003 * 109.47168 * 64.99337 * 14 10 9 40 40 H 0.96996 * 119.99713 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.50135 * 61.31879 * 23 5 4 42 42 H 1.08998 * 109.50489 * 181.44691 * 23 5 4 43 43 H 1.09003 * 109.50282 * 296.91493 * 24 23 5 44 44 H 1.08991 * 109.54181 * 176.80176 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5092 -0.7880 -1.2048 6 6 4.0445 -1.4260 -2.4149 7 6 5.5644 -1.2539 -2.4524 8 7 6.0998 -1.8924 -3.6622 9 6 7.5600 -1.7473 -3.7318 10 6 8.0796 -2.4227 -5.0025 11 1 7.5604 -2.0142 -5.8695 12 6 7.8356 -3.8722 -4.9227 13 7 7.6482 -4.9898 -4.8612 14 6 9.5816 -2.1652 -5.1394 15 6 10.0697 -2.7244 -6.4508 16 1 9.3780 -3.2149 -7.1197 17 6 11.3995 -2.6100 -6.7968 18 7 11.8256 -3.0985 -7.9411 19 14 12.5957 -1.7610 -5.6403 20 1 13.1803 -2.7612 -4.7112 21 1 13.6810 -1.1254 -6.4299 22 1 11.8770 -0.7216 -4.8603 23 6 3.9639 -1.4884 0.0052 24 6 3.4335 -0.7574 1.2413 25 8 2.0075 -0.6767 1.1659 26 1 -0.3633 -1.0276 0.0016 27 1 -0.3633 0.5152 0.8892 28 1 -0.3633 0.5125 -0.8908 29 1 1.7274 -0.1787 -2.1391 30 1 1.6331 -1.7338 -1.2766 31 1 3.6043 -0.9600 -3.2964 32 1 3.7994 -2.4880 -2.4045 33 1 6.0047 -1.7199 -1.5709 34 1 5.8096 -0.1919 -2.4628 35 1 5.8307 -2.8638 -3.7077 36 1 7.8194 -0.6888 -3.7513 37 1 8.0137 -2.2166 -2.8589 38 1 9.7704 -1.0921 -5.1092 39 1 10.1097 -2.6502 -4.3183 40 1 12.7611 -3.0183 -8.1844 41 1 3.5866 -2.5110 -0.0027 42 1 5.0536 -1.5021 0.0301 43 1 3.8534 0.2479 1.2777 44 1 3.7201 -1.3044 2.1394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336763920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:21 Heat of formation + Delta-G solvation = -23.885431 kcal Electronic energy + Delta-G solvation = -21499.363450 eV Core-core repulsion = 18258.379152 eV Total energy + Delta-G solvation = -3240.984298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06399 -37.79132 -36.52826 -34.97961 -33.60291 -33.17482 -31.89225 -29.73498 -28.47001 -26.69277 -24.84361 -23.63146 -22.61647 -21.70031 -21.17007 -20.70164 -17.02299 -16.88498 -16.79740 -16.61991 -16.10708 -15.54873 -15.28609 -15.10192 -14.77497 -14.30431 -13.90087 -13.67191 -13.29840 -13.04670 -12.82953 -12.73947 -12.71090 -12.49401 -12.28069 -12.17801 -11.95307 -11.56093 -11.53785 -11.43703 -11.28184 -11.12918 -10.90578 -10.79264 -10.32865 -10.03688 -9.95591 -9.77320 -9.34899 -8.76882 -8.63163 -8.45160 -6.12037 -4.12845 3.25513 3.26177 3.33269 3.33844 3.41675 3.50114 3.54576 4.26151 4.36881 4.41605 4.59509 4.60849 4.67135 4.75517 4.79481 4.91639 4.98002 5.10667 5.17581 5.22507 5.23000 5.29202 5.32744 5.37334 5.47042 5.52148 5.55378 5.64883 5.71694 5.75574 5.81347 5.98776 6.14296 6.32499 6.58166 6.60907 6.83573 6.92973 6.94864 7.10421 7.29641 7.61911 8.30256 8.40676 8.91361 9.47614 11.01055 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034565 B = 0.002579 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.867035 B =10855.214289 C =11146.260669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.089 3.911 3 H 0.068 0.932 4 C 0.025 3.975 5 N -0.536 5.536 6 C 0.057 3.943 7 C 0.063 3.937 8 N -0.691 5.691 9 C 0.067 3.933 10 C 0.017 3.983 11 H 0.117 0.883 12 C 0.238 3.762 13 N -0.469 5.469 14 C -0.004 4.004 15 C -0.528 4.528 16 H 0.074 0.926 17 C 0.070 3.930 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.262 1.262 23 C 0.012 3.988 24 C 0.065 3.935 25 O -0.385 6.385 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.028 0.972 34 H 0.084 0.916 35 H 0.338 0.662 36 H 0.093 0.907 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.019 0.981 40 H 0.265 0.735 41 H 0.042 0.958 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.494 9.289 17.609 27.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.086 0.914 4 C -0.104 4.104 5 N -0.261 5.261 6 C -0.071 4.071 7 C -0.067 4.067 8 N -0.322 5.322 9 C -0.063 4.063 10 C -0.005 4.005 11 H 0.135 0.865 12 C -0.079 4.079 13 N -0.145 5.145 14 C -0.043 4.043 15 C -0.566 4.566 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.116 4.116 24 C -0.012 4.012 25 O -0.304 6.304 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.155 0.845 36 H 0.111 0.889 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.685 8.530 17.335 27.583 hybrid contribution 1.161 -0.700 0.763 1.556 sum -18.524 7.830 18.098 27.055 Atomic orbital electron populations 1.21754 0.92777 1.02992 1.02750 1.22169 0.94822 0.95683 0.84256 0.91430 1.22818 0.87686 1.00327 0.99526 1.62134 1.08786 1.52923 1.02268 1.22091 0.95539 0.97047 0.92429 1.21906 0.93303 1.00806 0.90662 1.60468 1.11734 1.20984 1.39020 1.22090 0.86098 1.01822 0.96261 1.19084 1.00926 0.81532 0.98995 0.86506 1.29141 0.91380 0.95264 0.92099 1.81005 1.10973 1.12773 1.09786 1.19635 0.87953 0.98204 0.98513 1.21029 0.95097 1.38183 1.02312 0.90784 1.25003 0.98244 0.94916 0.95024 1.69908 1.16002 1.45574 1.21989 0.86804 0.81111 0.80377 0.81168 1.20339 1.21224 1.18662 1.22883 1.01594 0.96300 0.90827 1.22641 0.80893 1.00441 0.97190 1.87984 1.21147 1.78403 1.42864 0.91890 0.91533 0.90795 0.89420 0.93939 0.89397 0.94847 0.95407 0.89757 0.84460 0.88905 0.94714 0.94218 0.96300 0.92551 0.93973 0.89225 0.92171 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.57 37.16 0.36 -0.53 16 2 C 0.09 0.71 3.43 -26.68 -0.09 0.62 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 4 C 0.02 0.20 4.93 -3.71 -0.02 0.19 16 5 N -0.54 -4.91 4.73 -234.31 -1.11 -6.02 16 6 C 0.06 0.54 5.22 -3.82 -0.02 0.52 16 7 C 0.06 0.65 5.62 -3.82 -0.02 0.63 16 8 N -0.69 -8.48 6.50 -113.78 -0.74 -9.22 16 9 C 0.07 0.91 5.12 -3.82 -0.02 0.89 16 10 C 0.02 0.29 2.42 -93.41 -0.23 0.06 16 11 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 12 C 0.24 4.71 12.97 -20.80 -0.27 4.44 16 13 N -0.47 -10.14 18.53 42.11 0.78 -9.36 16 14 C 0.00 -0.09 3.49 -27.88 -0.10 -0.18 16 15 C -0.53 -14.18 9.15 -34.44 -0.32 -14.50 16 16 H 0.07 2.19 7.84 -52.48 -0.41 1.77 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 19 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 23 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16 24 C 0.07 0.52 7.01 37.21 0.26 0.78 16 25 O -0.38 -3.74 10.47 -35.23 -0.37 -4.11 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 32 H 0.03 0.34 8.12 -51.93 -0.42 -0.09 16 33 H 0.03 0.28 6.52 -51.93 -0.34 -0.05 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.34 4.35 7.81 -39.29 -0.31 4.04 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 39 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.73 6.38 -51.93 -0.33 0.40 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 355.80 15.07 5.36 5.36 Total: -1.00 -31.11 355.80 -8.20 -39.31 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.65 Total: -0.48 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -0.58 Total: -5.12 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.29 Total: -50.86 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.37 Total: -4.11 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.11 -8.20 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336763920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.424 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds