Wall clock time and date at job start Tue Mar 31 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.50882 * 2 1 4 4 C 1.53102 * 109.50687 * 239.91414 * 2 1 3 5 5 N 1.47010 * 109.25851 * 183.21738 * 4 2 1 6 6 C 1.46901 * 110.99887 * 182.38930 * 5 4 2 7 7 C 1.53004 * 109.46916 * 169.99880 * 6 5 4 8 8 N 1.46901 * 109.46916 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47496 * 54.99761 * 10 9 8 12 12 C 1.47201 * 109.47245 * 294.99938 * 10 9 8 13 13 N 9.27155 * 131.29141 * 224.25232 * 2 1 3 14 14 C 1.53004 * 109.47435 * 175.00361 * 10 9 8 15 15 C 1.50695 * 109.47384 * 185.00247 * 14 10 9 16 16 H 1.08004 * 120.00169 * 359.97438 * 15 14 10 17 17 C 1.37879 * 119.99793 * 179.97438 * 15 14 10 18 18 N 1.31520 * 119.99740 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00032 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.47368 * 90.00334 * 19 17 15 21 21 H 1.48505 * 109.47067 * 210.00021 * 19 17 15 22 22 H 1.48505 * 109.47434 * 330.00013 * 19 17 15 23 23 C 1.47021 * 110.75436 * 58.61347 * 5 4 2 24 24 C 1.53095 * 109.25933 * 301.38601 * 23 5 4 25 25 O 1.43019 * 109.25861 * 56.84596 * 24 23 5 26 26 H 1.08995 * 109.47229 * 180.08789 * 1 2 3 27 27 H 1.08995 * 109.46899 * 300.08711 * 1 2 3 28 28 H 1.09004 * 109.47098 * 60.08782 * 1 2 3 29 29 H 1.08995 * 109.50583 * 63.28302 * 4 2 1 30 30 H 1.09002 * 109.50265 * 303.14959 * 4 2 1 31 31 H 1.08995 * 109.47185 * 50.00588 * 6 5 4 32 32 H 1.08996 * 109.47094 * 289.99512 * 6 5 4 33 33 H 1.09004 * 109.46889 * 60.00381 * 7 6 5 34 34 H 1.08995 * 109.47384 * 300.00021 * 7 6 5 35 35 H 1.00901 * 111.00067 * 303.95263 * 8 7 6 36 36 H 1.09001 * 109.46798 * 300.00327 * 9 8 7 37 37 H 1.08998 * 109.46961 * 60.00043 * 9 8 7 38 38 H 1.09001 * 109.46592 * 304.99966 * 14 10 9 39 39 H 1.09003 * 109.47168 * 64.99337 * 14 10 9 40 40 H 0.96996 * 119.99713 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.50135 * 61.31879 * 23 5 4 42 42 H 1.08998 * 109.50489 * 181.44691 * 23 5 4 43 43 H 1.09003 * 109.50282 * 296.91493 * 24 23 5 44 44 H 1.08991 * 109.54181 * 176.80176 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5092 -0.7880 -1.2048 6 6 4.0445 -1.4260 -2.4149 7 6 5.5644 -1.2539 -2.4524 8 7 6.0998 -1.8924 -3.6622 9 6 7.5600 -1.7473 -3.7318 10 6 8.0796 -2.4227 -5.0025 11 1 7.5604 -2.0142 -5.8695 12 6 7.8356 -3.8722 -4.9227 13 7 7.6482 -4.9898 -4.8612 14 6 9.5816 -2.1652 -5.1394 15 6 10.0697 -2.7244 -6.4508 16 1 9.3780 -3.2149 -7.1197 17 6 11.3995 -2.6100 -6.7968 18 7 11.8256 -3.0985 -7.9411 19 14 12.5957 -1.7610 -5.6403 20 1 13.1803 -2.7612 -4.7112 21 1 13.6810 -1.1254 -6.4299 22 1 11.8770 -0.7216 -4.8603 23 6 3.9639 -1.4884 0.0052 24 6 3.4335 -0.7574 1.2413 25 8 2.0075 -0.6767 1.1659 26 1 -0.3633 -1.0276 0.0016 27 1 -0.3633 0.5152 0.8892 28 1 -0.3633 0.5125 -0.8908 29 1 1.7274 -0.1787 -2.1391 30 1 1.6331 -1.7338 -1.2766 31 1 3.6043 -0.9600 -3.2964 32 1 3.7994 -2.4880 -2.4045 33 1 6.0047 -1.7199 -1.5709 34 1 5.8096 -0.1919 -2.4628 35 1 5.8307 -2.8638 -3.7077 36 1 7.8194 -0.6888 -3.7513 37 1 8.0137 -2.2166 -2.8589 38 1 9.7704 -1.0921 -5.1092 39 1 10.1097 -2.6502 -4.3183 40 1 12.7611 -3.0183 -8.1844 41 1 3.5866 -2.5110 -0.0027 42 1 5.0536 -1.5021 0.0301 43 1 3.8534 0.2479 1.2777 44 1 3.7201 -1.3044 2.1394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336763920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:20 Heat of formation + Delta-G solvation = -46.947289 kcal Electronic energy + Delta-G solvation = -21500.363487 eV Core-core repulsion = 18258.379152 eV Total energy + Delta-G solvation = -3241.984335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.72297 -39.03008 -37.51992 -36.19176 -35.28418 -33.82402 -33.53789 -30.72337 -29.34635 -27.99219 -25.70787 -24.39637 -23.70754 -23.31579 -22.07659 -21.36121 -18.93787 -18.31738 -17.50498 -17.38319 -16.99709 -16.54664 -16.16475 -16.03649 -15.73119 -15.51320 -15.10515 -14.91883 -14.57404 -14.33010 -14.03266 -13.94677 -13.66882 -13.54044 -13.22927 -13.18401 -13.03186 -12.80156 -12.65984 -12.53089 -12.30248 -12.12821 -12.01140 -11.81362 -11.70858 -11.58673 -11.42725 -11.28714 -10.73582 -10.60334 -9.50740 -9.37241 -8.24563 -6.30325 1.43851 1.44954 1.56292 1.92262 1.93418 2.41342 2.54935 2.82610 3.11263 3.22196 3.35569 3.78620 3.93620 3.94549 4.02721 4.14535 4.17495 4.27674 4.28631 4.40794 4.45258 4.57900 4.59826 4.62175 4.70185 4.73989 4.82007 4.84514 4.94258 4.96362 4.99261 5.02426 5.09090 5.25927 5.27396 5.45828 5.63469 5.86674 5.90580 6.03843 6.22593 6.25925 6.29307 6.72851 6.79776 7.34074 8.92366 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034565 B = 0.002579 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.867035 B =10855.214289 C =11146.260669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.025 3.975 5 N -0.539 5.539 6 C 0.063 3.937 7 C 0.069 3.931 8 N -0.695 5.695 9 C 0.078 3.922 10 C 0.023 3.977 11 H 0.120 0.880 12 C 0.248 3.752 13 N -0.507 5.507 14 C -0.003 4.003 15 C -0.531 4.531 16 H 0.028 0.972 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.949 3.051 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.221 1.221 23 C 0.013 3.987 24 C 0.064 3.936 25 O -0.404 6.404 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.033 0.967 31 H 0.087 0.913 32 H 0.025 0.975 33 H 0.032 0.968 34 H 0.090 0.910 35 H 0.333 0.667 36 H 0.115 0.885 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.264 0.736 41 H 0.031 0.969 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.762 11.519 19.858 30.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 H 0.087 0.913 4 C -0.103 4.103 5 N -0.264 5.264 6 C -0.066 4.066 7 C -0.060 4.060 8 N -0.325 5.325 9 C -0.052 4.052 10 C 0.001 3.999 11 H 0.138 0.862 12 C -0.068 4.068 13 N -0.185 5.185 14 C -0.042 4.042 15 C -0.569 4.569 16 H 0.046 0.954 17 C -0.196 4.196 18 N -0.595 5.595 19 Si 0.772 3.228 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.143 1.143 23 C -0.115 4.115 24 C -0.013 4.013 25 O -0.324 6.324 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.108 0.892 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.991 10.777 19.608 30.004 hybrid contribution 1.162 -1.446 -0.007 1.855 sum -18.829 9.331 19.601 28.737 Atomic orbital electron populations 1.21763 0.91547 1.02924 1.03704 1.22296 0.95847 0.95447 0.83597 0.91291 1.22859 0.87160 1.00034 1.00250 1.62166 1.09323 1.52751 1.02199 1.21996 0.95231 0.96583 0.92742 1.21882 0.93498 1.00800 0.89862 1.60449 1.11003 1.20790 1.40294 1.21985 0.86744 1.02514 0.93939 1.19134 0.98961 0.80212 1.01565 0.86211 1.29716 0.90374 0.95798 0.90876 1.81005 1.12131 1.14042 1.11296 1.19592 0.90119 0.99267 0.95184 1.21415 0.94449 1.37109 1.03961 0.95371 1.26076 1.00714 0.96000 0.96810 1.70094 1.16499 1.48182 1.24772 0.85681 0.78304 0.79993 0.78829 1.20302 1.21617 1.14322 1.22904 1.01939 0.95737 0.90956 1.22748 0.80239 1.00821 0.97464 1.87966 1.22049 1.78705 1.43645 0.92437 0.91347 0.89091 0.88337 0.94867 0.89443 0.95681 0.94950 0.89211 0.85019 0.86643 0.94033 0.91515 0.95634 0.92680 0.95088 0.88575 0.91738 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.57 71.98 0.69 -0.85 16 2 C 0.09 1.25 3.43 30.63 0.10 1.36 16 3 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 4 C 0.03 0.38 4.93 86.32 0.43 0.81 16 5 N -0.54 -8.97 4.73 -895.21 -4.23 -13.20 16 6 C 0.06 1.09 5.22 86.30 0.45 1.54 16 7 C 0.07 1.23 5.62 86.30 0.49 1.72 16 8 N -0.69 -15.33 6.50 -513.88 -3.34 -18.67 16 9 C 0.08 1.85 5.12 86.30 0.44 2.29 16 10 C 0.02 0.76 2.42 -12.60 -0.03 0.73 16 11 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 12 C 0.25 9.69 12.97 89.45 1.16 10.85 16 13 N -0.51 -22.03 18.53 19.99 0.37 -21.66 16 14 C 0.00 -0.10 3.49 29.85 0.10 0.00 16 15 C -0.53 -28.60 9.15 25.60 0.23 -28.36 16 16 H 0.03 1.72 7.84 -2.91 -0.02 1.70 16 17 C 0.00 0.03 5.47 84.65 0.46 0.49 16 18 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 19 Si 0.95 41.22 27.47 68.60 1.88 43.11 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.22 -8.09 6.54 99.48 0.65 -7.44 16 23 C 0.01 0.20 5.44 86.31 0.47 0.67 16 24 C 0.06 0.93 7.01 72.01 0.50 1.43 16 25 O -0.40 -7.37 10.47 -148.98 -1.56 -8.93 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.10 1.25 8.09 -2.39 -0.02 1.23 16 30 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 1.54 8.04 -2.39 -0.02 1.52 16 32 H 0.02 0.48 8.12 -2.39 -0.02 0.46 16 33 H 0.03 0.57 6.52 -2.39 -0.02 0.55 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.33 8.03 7.81 -89.69 -0.70 7.33 16 36 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 2.35 7.20 -2.39 -0.02 2.34 16 39 H 0.03 1.00 7.57 -2.39 -0.02 0.98 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.10 1.36 6.38 -2.39 -0.02 1.35 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -68.64 355.80 -0.86 -69.50 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.21 Total: 16.09 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.50 Total: -7.32 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -6.90 Total: -112.44 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -1.56 Total: -8.93 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.88 Total: 43.11 kcal Total: -68.64 -0.86 -69.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336763920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.551 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds