Wall clock time and date at job start Tue Mar 31 2020 05:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.50946 * 2 1 4 4 C 1.53101 * 109.50699 * 120.09154 * 2 1 3 5 5 N 1.47013 * 109.25712 * 176.82382 * 4 2 1 6 6 C 1.46901 * 110.99794 * 177.60516 * 5 4 2 7 7 C 1.53000 * 109.46769 * 169.99933 * 6 5 4 8 8 N 1.46901 * 109.46769 * 180.02562 * 7 6 5 9 9 C 1.46906 * 110.99793 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46978 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47454 * 304.99901 * 10 9 8 12 12 C 1.47198 * 109.47439 * 64.99788 * 10 9 8 13 13 N 9.16414 * 125.86560 * 139.07532 * 2 1 3 14 14 C 1.53001 * 109.47271 * 185.00310 * 10 9 8 15 15 C 1.50696 * 109.47339 * 175.00034 * 14 10 9 16 16 H 1.07999 * 120.00490 * 359.97438 * 15 14 10 17 17 C 1.37885 * 119.99921 * 179.97438 * 15 14 10 18 18 N 1.31511 * 119.99695 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99824 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47419 * 90.00057 * 19 17 15 21 21 H 1.48509 * 109.46723 * 209.99874 * 19 17 15 22 22 H 1.48503 * 109.47194 * 329.99380 * 19 17 15 23 23 C 1.47009 * 110.75347 * 301.38643 * 5 4 2 24 24 C 1.53100 * 109.26251 * 58.61327 * 23 5 4 25 25 O 1.43014 * 109.25587 * 303.15422 * 24 23 5 26 26 H 1.09003 * 109.46793 * 299.91175 * 1 2 3 27 27 H 1.08995 * 109.47314 * 59.90696 * 1 2 3 28 28 H 1.09000 * 109.47392 * 179.90990 * 1 2 3 29 29 H 1.09005 * 109.50453 * 56.88678 * 4 2 1 30 30 H 1.09000 * 109.54110 * 296.78527 * 4 2 1 31 31 H 1.09001 * 109.46874 * 50.00213 * 6 5 4 32 32 H 1.08992 * 109.47407 * 290.00231 * 6 5 4 33 33 H 1.09002 * 109.47398 * 300.00295 * 7 6 5 34 34 H 1.09001 * 109.47194 * 60.00475 * 7 6 5 35 35 H 1.00899 * 111.00283 * 303.95539 * 8 7 6 36 36 H 1.08995 * 109.47087 * 299.99901 * 9 8 7 37 37 H 1.09002 * 109.46903 * 59.99922 * 9 8 7 38 38 H 1.09005 * 109.46867 * 294.99797 * 14 10 9 39 39 H 1.08998 * 109.47402 * 54.99404 * 14 10 9 40 40 H 0.97007 * 119.99642 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.50728 * 178.55452 * 23 5 4 42 42 H 1.09008 * 109.50611 * 298.67849 * 23 5 4 43 43 H 1.08997 * 109.50528 * 183.21655 * 24 23 5 44 44 H 1.09002 * 109.50034 * 63.08813 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7236 1.2486 5 7 3.5094 -0.7872 1.2051 6 6 4.0447 -1.4252 2.4153 7 6 5.5383 -1.6994 2.2290 8 7 6.0735 -2.3380 3.4389 9 6 7.5089 -2.6162 3.2963 10 6 8.0289 -3.2801 4.5728 11 1 7.7911 -2.6525 5.4317 12 6 7.3914 -4.5968 4.7359 13 7 6.8992 -5.6113 4.8649 14 6 9.5456 -3.4565 4.4746 15 6 10.0740 -3.9967 5.7783 16 1 9.3961 -4.1941 6.5956 17 6 11.4232 -4.2389 5.9280 18 7 11.8844 -4.7099 7.0659 19 14 12.5958 -3.8968 4.5148 20 1 13.0894 -2.4994 4.6082 21 1 13.7457 -4.8338 4.5879 22 1 11.8848 -4.0855 3.2247 23 6 3.9648 -1.4869 -0.0049 24 6 3.4343 -0.7558 -1.2410 25 8 2.0083 -0.6761 -1.1660 26 1 -0.3633 0.5125 0.8908 27 1 -0.3634 0.5152 -0.8891 28 1 -0.3634 -1.0276 -0.0016 29 1 1.6337 -1.7342 1.2761 30 1 1.7267 -0.1800 2.1395 31 1 3.5219 -2.3653 2.5919 32 1 3.9005 -0.7634 3.2691 33 1 5.6826 -2.3614 1.3751 34 1 6.0611 -0.7594 2.0524 35 1 5.8944 -1.7729 4.2554 36 1 7.6672 -3.2840 2.4495 37 1 8.0450 -1.6822 3.1277 38 1 9.7788 -4.1548 3.6707 39 1 10.0106 -2.4932 4.2652 40 1 12.8336 -4.8799 7.1713 41 1 5.0545 -1.5000 -0.0294 42 1 3.5881 -2.5098 0.0026 43 1 3.7216 -1.3031 -2.1387 44 1 3.8537 0.2497 -1.2769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336763921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:23 Heat of formation + Delta-G solvation = -21.356773 kcal Electronic energy + Delta-G solvation = -21540.512960 eV Core-core repulsion = 18299.638313 eV Total energy + Delta-G solvation = -3240.874647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.08436 -37.73593 -36.52100 -34.93638 -33.54415 -33.16553 -31.86227 -29.67368 -28.54927 -26.70166 -24.75756 -23.82017 -22.58239 -21.63931 -21.22985 -20.54523 -17.24098 -16.92602 -16.75737 -16.66771 -15.81020 -15.69277 -15.20839 -14.89793 -14.64388 -14.30531 -14.13976 -13.61460 -13.35849 -13.03101 -12.96917 -12.74650 -12.48057 -12.40755 -12.19028 -12.13626 -11.98790 -11.70325 -11.52700 -11.32328 -11.20135 -11.09578 -10.79681 -10.77341 -10.43478 -9.99016 -9.91790 -9.76852 -9.34904 -8.72407 -8.63886 -8.45421 -6.12557 -4.13347 3.24013 3.28837 3.33221 3.33882 3.43820 3.68766 3.76636 4.23609 4.36397 4.42312 4.57316 4.63252 4.75559 4.78330 4.82126 4.94117 4.97340 5.11383 5.17294 5.22160 5.24333 5.29457 5.35193 5.39123 5.48503 5.53251 5.55720 5.64710 5.72026 5.76403 5.78535 5.85736 6.17234 6.26267 6.57004 6.60611 6.84841 6.89133 6.94711 7.09771 7.34879 7.61522 8.38482 8.52417 8.91037 9.47138 11.00523 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034723 B = 0.002624 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.187441 B =10666.555162 C =11083.975242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.089 3.911 3 H 0.067 0.933 4 C 0.024 3.976 5 N -0.537 5.537 6 C 0.056 3.944 7 C 0.057 3.943 8 N -0.693 5.693 9 C 0.066 3.934 10 C 0.020 3.980 11 H 0.105 0.895 12 C 0.252 3.748 13 N -0.471 5.471 14 C -0.005 4.005 15 C -0.529 4.529 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.264 1.264 23 C 0.010 3.990 24 C 0.065 3.935 25 O -0.385 6.385 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.343 0.657 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.025 0.975 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.093 0.907 42 H 0.045 0.955 43 H 0.098 0.902 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.436 13.625 -15.703 27.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.085 0.915 4 C -0.104 4.104 5 N -0.262 5.262 6 C -0.072 4.072 7 C -0.073 4.073 8 N -0.325 5.325 9 C -0.064 4.064 10 C -0.002 4.002 11 H 0.123 0.877 12 C -0.065 4.065 13 N -0.147 5.147 14 C -0.044 4.044 15 C -0.566 4.566 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.534 5.534 19 Si 0.705 3.295 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.118 4.118 24 C -0.012 4.012 25 O -0.304 6.304 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.161 0.839 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.063 0.937 43 H 0.116 0.884 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.150 11.798 -15.755 27.462 hybrid contribution 1.315 0.600 -0.204 1.459 sum -17.835 12.398 -15.959 26.954 Atomic orbital electron populations 1.21755 0.92790 1.03034 1.02702 1.22152 0.94810 0.95607 0.84312 0.91544 1.22823 0.87768 1.00433 0.99407 1.62269 1.08780 1.52787 1.02380 1.22094 0.95033 0.97925 0.92099 1.22030 0.93820 0.97595 0.93822 1.60440 1.15851 1.51283 1.04901 1.22083 0.86496 0.99647 0.98196 1.18952 0.97012 0.86265 0.98014 0.87722 1.28656 0.91363 0.94375 0.92125 1.80956 1.11887 1.12341 1.09532 1.19635 0.87778 0.97900 0.99081 1.21026 0.93680 1.43965 0.97962 0.90774 1.25002 0.98274 0.94344 0.95555 1.69907 1.14383 1.44555 1.24603 0.86810 0.80870 0.78432 0.83396 1.20049 1.21292 1.18863 1.22922 1.01730 0.96533 0.90659 1.22665 0.80844 1.00376 0.97338 1.87983 1.21194 1.78416 1.42779 0.90853 0.91535 0.91838 0.93781 0.89611 0.93617 0.90389 0.90872 0.94132 0.83864 0.90531 0.93135 0.95649 0.94927 0.92547 0.88897 0.93705 0.88394 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.57 37.16 0.36 -0.55 16 2 C 0.09 0.72 3.43 -26.68 -0.09 0.63 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.02 0.20 4.91 -3.71 -0.02 0.18 16 5 N -0.54 -4.94 4.88 -234.30 -1.14 -6.08 16 6 C 0.06 0.53 5.54 -3.82 -0.02 0.51 16 7 C 0.06 0.57 4.95 -3.82 -0.02 0.55 16 8 N -0.69 -8.25 6.20 -113.78 -0.71 -8.96 16 9 C 0.07 0.88 5.05 -3.82 -0.02 0.86 16 10 C 0.02 0.34 2.35 -93.41 -0.22 0.12 16 11 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 12 C 0.25 5.18 13.67 -20.80 -0.28 4.90 16 13 N -0.47 -10.72 18.53 42.11 0.78 -9.94 16 14 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 15 C -0.53 -14.15 9.15 -34.44 -0.32 -14.47 16 16 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 19 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 23 C 0.01 0.08 4.94 -3.71 -0.02 0.07 16 24 C 0.06 0.53 7.01 37.21 0.26 0.79 16 25 O -0.38 -3.80 10.47 -35.23 -0.37 -4.17 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.76 6.28 -51.93 -0.33 0.43 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.34 3.65 8.73 -39.29 -0.34 3.30 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 39 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.09 0.75 6.05 -51.93 -0.31 0.43 16 42 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -32.03 355.82 -8.22 -40.25 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.67 Total: -1.37 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.59 Total: -4.74 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.29 Total: -51.19 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.37 Total: -4.17 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.03 -8.22 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336763921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.892 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds