Wall clock time and date at job start Tue Mar 31 2020 05:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.50946 * 2 1 4 4 C 1.53101 * 109.50699 * 120.09154 * 2 1 3 5 5 N 1.47013 * 109.25712 * 176.82382 * 4 2 1 6 6 C 1.46901 * 110.99794 * 177.60516 * 5 4 2 7 7 C 1.53000 * 109.46769 * 169.99933 * 6 5 4 8 8 N 1.46901 * 109.46769 * 180.02562 * 7 6 5 9 9 C 1.46906 * 110.99793 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46978 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47454 * 304.99901 * 10 9 8 12 12 C 1.47198 * 109.47439 * 64.99788 * 10 9 8 13 13 N 9.16414 * 125.86560 * 139.07532 * 2 1 3 14 14 C 1.53001 * 109.47271 * 185.00310 * 10 9 8 15 15 C 1.50696 * 109.47339 * 175.00034 * 14 10 9 16 16 H 1.07999 * 120.00490 * 359.97438 * 15 14 10 17 17 C 1.37885 * 119.99921 * 179.97438 * 15 14 10 18 18 N 1.31511 * 119.99695 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99824 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47419 * 90.00057 * 19 17 15 21 21 H 1.48509 * 109.46723 * 209.99874 * 19 17 15 22 22 H 1.48503 * 109.47194 * 329.99380 * 19 17 15 23 23 C 1.47009 * 110.75347 * 301.38643 * 5 4 2 24 24 C 1.53100 * 109.26251 * 58.61327 * 23 5 4 25 25 O 1.43014 * 109.25587 * 303.15422 * 24 23 5 26 26 H 1.09003 * 109.46793 * 299.91175 * 1 2 3 27 27 H 1.08995 * 109.47314 * 59.90696 * 1 2 3 28 28 H 1.09000 * 109.47392 * 179.90990 * 1 2 3 29 29 H 1.09005 * 109.50453 * 56.88678 * 4 2 1 30 30 H 1.09000 * 109.54110 * 296.78527 * 4 2 1 31 31 H 1.09001 * 109.46874 * 50.00213 * 6 5 4 32 32 H 1.08992 * 109.47407 * 290.00231 * 6 5 4 33 33 H 1.09002 * 109.47398 * 300.00295 * 7 6 5 34 34 H 1.09001 * 109.47194 * 60.00475 * 7 6 5 35 35 H 1.00899 * 111.00283 * 303.95539 * 8 7 6 36 36 H 1.08995 * 109.47087 * 299.99901 * 9 8 7 37 37 H 1.09002 * 109.46903 * 59.99922 * 9 8 7 38 38 H 1.09005 * 109.46867 * 294.99797 * 14 10 9 39 39 H 1.08998 * 109.47402 * 54.99404 * 14 10 9 40 40 H 0.97007 * 119.99642 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.50728 * 178.55452 * 23 5 4 42 42 H 1.09008 * 109.50611 * 298.67849 * 23 5 4 43 43 H 1.08997 * 109.50528 * 183.21655 * 24 23 5 44 44 H 1.09002 * 109.50034 * 63.08813 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7236 1.2486 5 7 3.5094 -0.7872 1.2051 6 6 4.0447 -1.4252 2.4153 7 6 5.5383 -1.6994 2.2290 8 7 6.0735 -2.3380 3.4389 9 6 7.5089 -2.6162 3.2963 10 6 8.0289 -3.2801 4.5728 11 1 7.7911 -2.6525 5.4317 12 6 7.3914 -4.5968 4.7359 13 7 6.8992 -5.6113 4.8649 14 6 9.5456 -3.4565 4.4746 15 6 10.0740 -3.9967 5.7783 16 1 9.3961 -4.1941 6.5956 17 6 11.4232 -4.2389 5.9280 18 7 11.8844 -4.7099 7.0659 19 14 12.5958 -3.8968 4.5148 20 1 13.0894 -2.4994 4.6082 21 1 13.7457 -4.8338 4.5879 22 1 11.8848 -4.0855 3.2247 23 6 3.9648 -1.4869 -0.0049 24 6 3.4343 -0.7558 -1.2410 25 8 2.0083 -0.6761 -1.1660 26 1 -0.3633 0.5125 0.8908 27 1 -0.3634 0.5152 -0.8891 28 1 -0.3634 -1.0276 -0.0016 29 1 1.6337 -1.7342 1.2761 30 1 1.7267 -0.1800 2.1395 31 1 3.5219 -2.3653 2.5919 32 1 3.9005 -0.7634 3.2691 33 1 5.6826 -2.3614 1.3751 34 1 6.0611 -0.7594 2.0524 35 1 5.8944 -1.7729 4.2554 36 1 7.6672 -3.2840 2.4495 37 1 8.0450 -1.6822 3.1277 38 1 9.7788 -4.1548 3.6707 39 1 10.0106 -2.4932 4.2652 40 1 12.8336 -4.8799 7.1713 41 1 5.0545 -1.5000 -0.0294 42 1 3.5881 -2.5098 0.0026 43 1 3.7216 -1.3031 -2.1387 44 1 3.8537 0.2497 -1.2769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336763921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:22 Heat of formation + Delta-G solvation = -45.497806 kcal Electronic energy + Delta-G solvation = -21541.559794 eV Core-core repulsion = 18299.638313 eV Total energy + Delta-G solvation = -3241.921480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75208 -38.92557 -37.55834 -36.16972 -35.24154 -33.84469 -33.48522 -30.65110 -29.41176 -28.01961 -25.62721 -24.54438 -23.70539 -23.28478 -22.06022 -21.24370 -18.91412 -18.56667 -17.46895 -17.36801 -16.72496 -16.49870 -16.33429 -15.88356 -15.52485 -15.45874 -15.36690 -15.03223 -14.46017 -14.21209 -14.14236 -13.83676 -13.59234 -13.48869 -13.24916 -13.14238 -13.02710 -12.87417 -12.79614 -12.37343 -12.29954 -12.13453 -12.07110 -11.80962 -11.66132 -11.55893 -11.39129 -11.25838 -10.72832 -10.58831 -9.45890 -9.33203 -8.24534 -6.30178 1.42608 1.46055 1.56096 2.05590 2.12777 2.41323 2.58520 2.83534 3.11688 3.27912 3.40774 3.77988 3.90503 3.98047 4.08637 4.14813 4.20729 4.25722 4.29294 4.37706 4.47839 4.58718 4.61413 4.68117 4.70531 4.74990 4.77394 4.83866 4.91235 4.96052 4.97638 5.00930 5.09317 5.24044 5.26635 5.45764 5.63596 5.84367 5.90752 6.06065 6.23149 6.26510 6.50826 6.77609 6.90491 7.34293 8.92405 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034723 B = 0.002624 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.187441 B =10666.555162 C =11083.975242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 H 0.070 0.930 4 C 0.024 3.976 5 N -0.538 5.538 6 C 0.062 3.938 7 C 0.064 3.936 8 N -0.706 5.706 9 C 0.078 3.922 10 C 0.024 3.976 11 H 0.118 0.882 12 C 0.263 3.737 13 N -0.518 5.518 14 C -0.003 4.003 15 C -0.531 4.531 16 H 0.028 0.972 17 C 0.001 3.999 18 N -0.955 5.955 19 Si 0.950 3.050 20 H -0.256 1.256 21 H -0.297 1.297 22 H -0.237 1.237 23 C 0.010 3.990 24 C 0.063 3.937 25 O -0.405 6.405 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.098 0.902 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.351 0.649 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.026 0.974 39 H 0.064 0.936 40 H 0.264 0.736 41 H 0.102 0.898 42 H 0.029 0.971 43 H 0.111 0.889 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.404 15.941 -17.966 30.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.029 3.971 3 H 0.088 0.912 4 C -0.104 4.104 5 N -0.264 5.264 6 C -0.066 4.066 7 C -0.065 4.065 8 N -0.339 5.339 9 C -0.052 4.052 10 C 0.002 3.998 11 H 0.136 0.864 12 C -0.054 4.054 13 N -0.196 5.196 14 C -0.042 4.042 15 C -0.569 4.569 16 H 0.047 0.953 17 C -0.196 4.196 18 N -0.595 5.595 19 Si 0.773 3.227 20 H -0.181 1.181 21 H -0.223 1.223 22 H -0.160 1.160 23 C -0.118 4.118 24 C -0.013 4.013 25 O -0.324 6.324 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.170 0.830 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.120 0.880 42 H 0.048 0.952 43 H 0.129 0.871 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.154 14.137 -18.035 29.867 hybrid contribution 1.224 -0.136 0.589 1.366 sum -17.930 14.001 -17.446 28.668 Atomic orbital electron populations 1.21766 0.91599 1.02884 1.03715 1.22283 0.95814 0.95434 0.83600 0.91224 1.22865 0.87336 0.99954 1.00243 1.62325 1.09222 1.52492 1.02331 1.22020 0.94651 0.97290 0.92640 1.21971 0.93930 0.97810 0.92767 1.60353 1.15099 1.52390 1.06076 1.21918 0.87542 1.00364 0.95351 1.19082 0.94640 0.85010 1.01019 0.86427 1.29433 0.90476 0.94770 0.90675 1.80954 1.13464 1.13859 1.11292 1.19588 0.90168 0.98870 0.95601 1.21414 0.93135 1.43127 0.99256 0.95317 1.26072 1.00660 0.94318 0.98531 1.70095 1.14811 1.47050 1.27565 0.85667 0.77846 0.78816 0.80400 1.18051 1.22325 1.16018 1.22948 1.02224 0.95746 0.90883 1.22777 0.80169 1.00829 0.97574 1.87964 1.22142 1.78748 1.43588 0.89076 0.91301 0.92539 0.95088 0.88372 0.95427 0.89560 0.91210 0.92898 0.82956 0.90648 0.90252 0.95560 0.91770 0.92684 0.87989 0.95250 0.87094 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.57 71.98 0.69 -0.90 16 2 C 0.09 1.28 3.43 30.63 0.10 1.39 16 3 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 4 C 0.02 0.38 4.91 86.32 0.42 0.80 16 5 N -0.54 -9.00 4.88 -895.21 -4.36 -13.37 16 6 C 0.06 1.07 5.54 86.30 0.48 1.55 16 7 C 0.06 1.12 4.95 86.30 0.43 1.54 16 8 N -0.71 -14.93 6.20 -513.88 -3.19 -18.12 16 9 C 0.08 1.81 5.05 86.30 0.44 2.25 16 10 C 0.02 0.79 2.35 -12.60 -0.03 0.76 16 11 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 12 C 0.26 10.67 13.67 89.45 1.22 11.89 16 13 N -0.52 -23.82 18.53 19.99 0.37 -23.45 16 14 C 0.00 -0.13 3.49 29.85 0.10 -0.02 16 15 C -0.53 -28.49 9.15 25.60 0.23 -28.25 16 16 H 0.03 1.74 7.84 -2.91 -0.02 1.72 16 17 C 0.00 0.04 5.47 84.66 0.46 0.50 16 18 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 19 Si 0.95 41.16 27.47 68.60 1.88 43.05 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 21 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 23 C 0.01 0.16 4.94 86.32 0.43 0.59 16 24 C 0.06 0.93 7.01 72.02 0.50 1.44 16 25 O -0.40 -7.56 10.47 -148.98 -1.56 -9.12 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.03 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.28 6.28 -2.39 -0.01 1.26 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.35 6.49 8.73 -89.69 -0.78 5.70 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.03 1.05 7.20 -2.38 -0.02 1.03 16 39 H 0.06 2.20 7.57 -2.39 -0.02 2.18 16 40 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 41 H 0.10 1.43 6.05 -2.39 -0.01 1.41 16 42 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 43 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -71.18 355.82 -0.94 -72.12 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.13 Total: 14.08 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 5.48 Total: -6.47 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -6.88 Total: -113.66 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -1.56 Total: -9.12 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.88 Total: 43.05 kcal Total: -71.18 -0.94 -72.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336763921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.622 kcal (2) G-P(sol) polarization free energy of solvation -71.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds