Wall clock time and date at job start Tue Mar 31 2020 05:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.50710 * 2 1 4 4 C 1.53096 * 109.54317 * 120.10872 * 2 1 3 5 5 N 1.47012 * 109.26008 * 176.80215 * 4 2 1 6 6 C 1.46899 * 111.00271 * 177.60497 * 5 4 2 7 7 C 1.52999 * 109.47338 * 189.68394 * 6 5 4 8 8 N 1.46902 * 109.47124 * 180.02562 * 7 6 5 9 9 C 1.46896 * 110.99763 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46966 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.47406 * 54.99710 * 10 9 8 12 12 C 1.47197 * 109.46813 * 294.99674 * 10 9 8 13 13 N 9.13332 * 128.18030 * 99.36838 * 2 1 3 14 14 C 1.53001 * 109.46971 * 174.99640 * 10 9 8 15 15 C 1.50700 * 109.47055 * 184.99568 * 14 10 9 16 16 H 1.08006 * 120.00146 * 0.02562 * 15 14 10 17 17 C 1.37877 * 120.00266 * 180.02562 * 15 14 10 18 18 N 1.31511 * 119.99902 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00299 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47078 * 59.99579 * 19 17 15 21 21 H 1.48495 * 109.47192 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46712 * 299.99784 * 19 17 15 23 23 C 1.47016 * 110.75470 * 301.38665 * 5 4 2 24 24 C 1.53102 * 109.25461 * 58.61239 * 23 5 4 25 25 O 1.43015 * 109.26036 * 303.14963 * 24 23 5 26 26 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46601 * 299.99885 * 1 2 3 28 28 H 1.08995 * 109.47112 * 59.99746 * 1 2 3 29 29 H 1.08997 * 109.50743 * 296.73975 * 4 2 1 30 30 H 1.09004 * 109.50543 * 56.87296 * 4 2 1 31 31 H 1.08998 * 109.47207 * 309.68963 * 6 5 4 32 32 H 1.09004 * 109.46416 * 69.68606 * 6 5 4 33 33 H 1.09001 * 109.46712 * 300.00305 * 7 6 5 34 34 H 1.08994 * 109.46931 * 59.99932 * 7 6 5 35 35 H 1.00900 * 110.99839 * 303.95484 * 8 7 6 36 36 H 1.09007 * 109.47110 * 299.99783 * 9 8 7 37 37 H 1.08995 * 109.47436 * 59.99939 * 9 8 7 38 38 H 1.08993 * 109.47424 * 305.00195 * 14 10 9 39 39 H 1.09002 * 109.47061 * 65.00390 * 14 10 9 40 40 H 0.96994 * 120.00190 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.50733 * 298.68050 * 23 5 4 42 42 H 1.08996 * 109.50496 * 178.54464 * 23 5 4 43 43 H 1.09003 * 109.50354 * 183.21851 * 24 23 5 44 44 H 1.08995 * 109.50425 * 63.08898 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0422 -0.7237 1.2481 5 7 3.5102 -0.7874 1.2036 6 6 4.0465 -1.4256 2.4132 7 6 5.5670 -1.2595 2.4462 8 7 6.1033 -1.8982 3.6555 9 6 7.5640 -1.7577 3.7214 10 6 8.0847 -2.4343 4.9911 11 1 7.7461 -3.4701 5.0159 12 6 7.5713 -1.7218 6.1725 13 7 7.1757 -1.1687 7.0837 14 6 9.6142 -2.3975 4.9981 15 6 10.1299 -3.1700 6.1848 16 1 9.4360 -3.6405 6.8658 17 6 11.4874 -3.2761 6.4014 18 7 12.3323 -2.7036 5.5720 19 14 12.1266 -4.2342 7.8721 20 1 11.6663 -5.6433 7.7829 21 1 13.6111 -4.1984 7.8789 22 1 11.6104 -3.6231 9.1232 23 6 3.9649 -1.4870 -0.0069 24 6 3.4334 -0.7555 -1.2424 25 8 2.0075 -0.6758 -1.1665 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.7283 -0.1796 2.1389 30 1 1.6348 -1.7344 1.2756 31 1 3.6104 -0.9566 3.2952 32 1 3.7970 -2.4867 2.4051 33 1 6.0030 -1.7285 1.5642 34 1 5.8164 -0.1985 2.4542 35 1 5.6667 -1.5254 4.4853 36 1 8.0142 -2.2297 2.8480 37 1 7.8269 -0.7001 3.7389 38 1 9.9926 -2.8466 4.0799 39 1 9.9525 -1.3633 5.0630 40 1 13.2873 -2.7785 5.7241 41 1 3.5882 -2.5097 0.0006 42 1 5.0545 -1.4998 -0.0322 43 1 3.7201 -1.3025 -2.1406 44 1 3.8528 0.2500 -1.2785 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336763922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:25 Heat of formation + Delta-G solvation = -28.493912 kcal Electronic energy + Delta-G solvation = -21435.536532 eV Core-core repulsion = 18194.352395 eV Total energy + Delta-G solvation = -3241.184136 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.01785 -37.67878 -36.45006 -34.89811 -33.57384 -33.14398 -31.76474 -29.56483 -28.31805 -26.36961 -24.76591 -23.61211 -22.55270 -21.92910 -21.20693 -20.64214 -16.82932 -16.74286 -16.67069 -16.50112 -15.93846 -15.73831 -15.21988 -14.83839 -14.68307 -14.46774 -13.89415 -13.51748 -13.20510 -13.01863 -12.78824 -12.71444 -12.56655 -12.31595 -12.15654 -12.05567 -11.94130 -11.49972 -11.45657 -11.28049 -11.05621 -11.00841 -10.76003 -10.72840 -10.55851 -10.27292 -9.91385 -9.55911 -9.25865 -8.69915 -8.46640 -8.38293 -6.10620 -4.13945 3.30426 3.30928 3.34698 3.38358 3.46135 3.54439 3.59824 4.32939 4.41068 4.46983 4.60800 4.65282 4.77551 4.79271 4.86622 4.97626 5.05257 5.16816 5.21113 5.26740 5.27275 5.32101 5.43536 5.48133 5.51930 5.56297 5.66892 5.69637 5.75198 5.79952 5.86178 6.11966 6.32466 6.51817 6.62344 6.65317 6.87500 7.05374 7.37341 7.42205 7.51357 7.84110 8.21691 8.37678 8.90323 9.51495 11.00234 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040166 B = 0.002454 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.931373 B =11407.546469 C =11866.537326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.089 3.911 3 H 0.067 0.933 4 C 0.025 3.975 5 N -0.538 5.538 6 C 0.057 3.943 7 C 0.062 3.938 8 N -0.693 5.693 9 C 0.069 3.931 10 C 0.007 3.993 11 H 0.111 0.889 12 C 0.241 3.759 13 N -0.477 5.477 14 C 0.033 3.967 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.014 3.986 24 C 0.064 3.936 25 O -0.385 6.385 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.338 0.662 36 H 0.091 0.909 37 H 0.036 0.964 38 H 0.040 0.960 39 H 0.024 0.976 40 H 0.263 0.737 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.820 3.902 -14.674 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 H 0.085 0.915 4 C -0.104 4.104 5 N -0.263 5.263 6 C -0.071 4.071 7 C -0.068 4.068 8 N -0.324 5.324 9 C -0.061 4.061 10 C -0.015 4.015 11 H 0.129 0.871 12 C -0.076 4.076 13 N -0.154 5.154 14 C -0.006 4.006 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.114 4.114 24 C -0.012 4.012 25 O -0.304 6.304 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.155 0.845 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.143 4.539 -13.775 24.821 hybrid contribution 0.729 -0.560 1.070 1.411 sum -19.414 3.980 -12.705 23.541 Atomic orbital electron populations 1.21752 0.92813 1.02989 1.02698 1.22156 0.94786 0.95658 0.84312 0.91544 1.22806 0.87822 1.00333 0.99401 1.62138 1.08655 1.53118 1.02438 1.22069 0.95335 0.97779 0.91926 1.21882 0.93469 0.97435 0.94000 1.60530 1.05813 1.61349 1.04723 1.22066 0.86385 0.99154 0.98456 1.19335 1.00081 0.98014 0.84079 0.87132 1.29366 0.91138 0.92677 0.94381 1.81077 1.12125 1.11059 1.11116 1.19160 0.84319 0.98452 0.98670 1.21107 0.91818 1.33485 1.10145 0.92553 1.24956 0.97007 0.95555 0.96467 1.69923 1.02551 1.43785 1.36766 0.86644 0.77674 0.80594 0.83107 1.20006 1.21184 1.20271 1.22871 1.01693 0.96350 0.90516 1.22663 0.80811 1.00440 0.97334 1.87980 1.21230 1.78422 1.42753 0.91856 0.90890 0.91534 0.89689 0.93833 0.90805 0.93515 0.90756 0.94356 0.84477 0.89047 0.94578 0.94189 0.95735 0.92721 0.93725 0.89046 0.88355 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.57 37.16 0.36 -0.57 16 2 C 0.09 0.74 3.42 -26.68 -0.09 0.65 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 4 C 0.02 0.21 4.93 -3.71 -0.02 0.19 16 5 N -0.54 -5.15 4.73 -234.31 -1.11 -6.26 16 6 C 0.06 0.57 5.22 -3.83 -0.02 0.55 16 7 C 0.06 0.68 5.61 -3.82 -0.02 0.66 16 8 N -0.69 -8.98 6.50 -113.78 -0.74 -9.72 16 9 C 0.07 1.01 5.12 -3.82 -0.02 0.99 16 10 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 11 H 0.11 1.94 8.14 -51.93 -0.42 1.51 16 12 C 0.24 4.84 12.98 -20.73 -0.27 4.57 16 13 N -0.48 -10.34 18.54 42.19 0.78 -9.56 16 14 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 15 C -0.53 -14.02 8.60 -34.44 -0.30 -14.31 16 16 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.01 0.12 5.43 -3.71 -0.02 0.10 16 24 C 0.06 0.53 7.01 37.21 0.26 0.79 16 25 O -0.38 -3.81 10.47 -35.23 -0.37 -4.18 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.73 8.04 -51.93 -0.42 0.32 16 32 H 0.05 0.50 8.12 -51.93 -0.42 0.07 16 33 H 0.07 0.79 6.51 -51.93 -0.34 0.45 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.34 4.53 7.81 -39.29 -0.31 4.23 16 36 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.75 6.37 -51.93 -0.33 0.42 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -29.97 359.41 -8.58 -38.54 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.69 Total: -1.54 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.59 Total: -4.23 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.33 Total: -50.29 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.37 Total: -4.18 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.97 -8.58 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336763922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.048 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds