Wall clock time and date at job start Tue Mar 31 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46854 * 110.99820 * 2 1 4 4 C 1.53036 * 109.52184 * 185.83657 * 3 2 1 5 5 C 1.53116 * 109.28198 * 300.82030 * 4 3 2 6 6 O 1.42902 * 109.52356 * 297.68908 * 5 4 3 7 7 C 1.53000 * 109.52564 * 177.56066 * 5 4 3 8 8 N 1.46893 * 109.46939 * 185.12412 * 7 5 4 9 9 C 1.46910 * 110.99761 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46906 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47407 * 304.99784 * 10 9 8 12 12 C 1.47206 * 109.47021 * 65.00197 * 10 9 8 13 13 N 7.42582 * 141.61970 * 146.88962 * 2 1 3 14 14 C 1.52997 * 109.46817 * 185.00004 * 10 9 8 15 15 C 1.50698 * 109.46933 * 175.00167 * 14 10 9 16 16 H 1.08003 * 120.00121 * 0.02562 * 15 14 10 17 17 C 1.37882 * 119.99840 * 179.97438 * 15 14 10 18 18 N 1.31510 * 120.00071 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99922 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47095 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47107 * 120.00101 * 19 17 15 22 22 H 1.48503 * 109.47150 * 240.00344 * 19 17 15 23 23 C 1.53125 * 109.21256 * 57.61900 * 5 4 3 24 24 C 1.46848 * 111.00018 * 124.20530 * 2 1 3 25 25 H 1.09006 * 109.47016 * 60.00284 * 1 2 3 26 26 H 1.08997 * 109.47387 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47389 * 300.00165 * 1 2 3 28 28 H 1.09003 * 109.46134 * 65.81956 * 3 2 1 29 29 H 1.09004 * 109.45184 * 305.85034 * 3 2 1 30 30 H 1.08997 * 109.50338 * 180.87566 * 4 3 2 31 31 H 1.08997 * 109.50211 * 60.76159 * 4 3 2 32 32 H 0.96697 * 114.00613 * 179.87144 * 6 5 4 33 33 H 1.09003 * 109.46988 * 65.12797 * 7 5 4 34 34 H 1.08993 * 109.46782 * 305.12731 * 7 5 4 35 35 H 1.00897 * 111.00751 * 303.95597 * 8 7 5 36 36 H 1.08997 * 109.46998 * 60.00442 * 9 8 7 37 37 H 1.08997 * 109.46873 * 300.00074 * 9 8 7 38 38 H 1.08998 * 109.47192 * 294.99969 * 14 10 9 39 39 H 1.09000 * 109.47325 * 55.00085 * 14 10 9 40 40 H 0.97004 * 119.99924 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.49662 * 62.32450 * 23 5 4 42 42 H 1.08993 * 109.50361 * 182.43579 * 23 5 4 43 43 H 1.09001 * 109.46395 * 294.17688 * 24 2 1 44 44 H 1.09001 * 109.45811 * 54.16129 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 -0.1467 5 6 4.1187 0.5371 1.0144 6 8 3.8183 1.1914 2.2488 7 6 5.6361 0.4451 0.8406 8 7 6.1969 -0.4214 1.8858 9 6 7.6554 -0.5339 1.7497 10 6 8.2019 -1.4425 2.8528 11 1 7.8839 -1.0657 3.8248 12 6 7.6866 -2.8084 2.6635 13 7 7.2901 -3.8619 2.5185 14 6 9.7304 -1.4605 2.7880 15 6 10.2729 -2.2555 3.9475 16 1 9.5953 -2.7035 4.6593 17 6 11.6344 -2.4118 4.0992 18 7 12.4595 -1.8667 3.2323 19 14 12.3070 -3.3967 5.5370 20 1 11.1799 -3.9011 6.3619 21 1 13.0970 -4.5448 5.0241 22 1 13.1788 -2.5276 6.3677 23 6 3.5182 -0.8714 1.0226 24 6 1.9952 -0.7707 1.1338 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.7323 1.8609 0.9376 29 1 1.5633 1.9256 -0.8331 30 1 3.9098 2.3513 -0.1310 31 1 3.7813 0.8568 -1.0905 32 1 4.1674 0.7391 3.0290 33 1 6.0721 1.4409 0.9216 34 1 5.8647 0.0269 -0.1396 35 1 5.9436 -0.0903 2.8046 36 1 8.1057 0.4549 1.8367 37 1 7.8977 -0.9591 0.7758 38 1 10.0490 -1.9194 1.8521 39 1 10.1083 -0.4394 2.8391 40 1 13.4174 -1.9764 3.3393 41 1 3.7816 -1.3846 0.0976 42 1 3.9101 -1.4292 1.8730 43 1 1.7324 -0.2707 2.0660 44 1 1.5635 -1.7715 1.1241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336784818.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:57 Heat of formation + Delta-G solvation = -35.916117 kcal Electronic energy + Delta-G solvation = -22205.334664 eV Core-core repulsion = 18963.828677 eV Total energy + Delta-G solvation = -3241.505987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00144 -37.47652 -36.48661 -34.80039 -33.50623 -32.47273 -31.35447 -30.98640 -28.04077 -26.25063 -24.40388 -23.51432 -22.54774 -21.87676 -21.41365 -19.94619 -17.40954 -16.58100 -16.43673 -16.09017 -15.34147 -15.19693 -15.11839 -14.75325 -14.58373 -14.12819 -13.72387 -13.57289 -13.29134 -12.93225 -12.65568 -12.47508 -12.33263 -12.17355 -12.01469 -11.81103 -11.59892 -11.57937 -11.32781 -11.23391 -11.20389 -11.08216 -10.74397 -10.60065 -10.37290 -10.26224 -9.92804 -9.55618 -9.23414 -8.51876 -8.49133 -8.39380 -6.12303 -4.15548 3.26677 3.35111 3.39474 3.71118 3.72398 3.80727 4.03070 4.10632 4.39447 4.59110 4.68105 4.72937 4.87951 4.97021 5.13201 5.16981 5.24082 5.26041 5.34097 5.36179 5.44687 5.50848 5.60135 5.63032 5.67434 5.70130 5.74837 5.81973 5.88591 5.97813 6.12130 6.19765 6.33469 6.44987 6.85258 6.88575 6.96094 7.32016 7.39589 7.49503 7.50508 7.82996 8.20063 8.55580 8.89498 9.50227 10.98625 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038079 B = 0.002990 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.131001 B = 9363.827950 C = 9699.971086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.060 3.940 4 C -0.101 4.101 5 C 0.135 3.865 6 O -0.562 6.562 7 C 0.034 3.966 8 N -0.690 5.690 9 C 0.068 3.932 10 C 0.010 3.990 11 H 0.098 0.902 12 C 0.254 3.746 13 N -0.478 5.478 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.130 4.130 24 C 0.057 3.943 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.023 0.977 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.375 0.625 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.335 0.665 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.037 0.963 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.709 9.464 -5.826 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.068 4.068 4 C -0.139 4.139 5 C 0.094 3.906 6 O -0.368 6.368 7 C -0.096 4.096 8 N -0.322 5.322 9 C -0.062 4.062 10 C -0.012 4.012 11 H 0.116 0.884 12 C -0.063 4.063 13 N -0.154 5.154 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.168 4.168 24 C -0.071 4.071 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.223 0.777 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.153 0.847 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.055 0.945 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.391 7.506 -7.269 22.912 hybrid contribution 1.044 0.676 2.241 2.563 sum -19.347 8.181 -5.028 21.599 Atomic orbital electron populations 1.22328 0.87568 1.01934 1.00436 1.61971 1.07362 1.13879 1.43741 1.21985 0.94979 0.89123 1.00696 1.21552 0.94818 1.00515 0.97035 1.21295 0.92449 0.91995 0.84868 1.86506 1.80372 1.54081 1.15827 1.22616 0.94338 0.95554 0.97066 1.60555 1.12110 1.53289 1.06244 1.22073 0.85722 0.98609 0.99819 1.19209 0.99891 0.83259 0.98880 0.88365 1.28806 0.90883 0.94575 0.91986 1.80946 1.11979 1.12621 1.09897 1.19171 0.84421 0.98750 0.98418 1.21175 0.91809 1.33106 1.10327 0.92445 1.24961 0.97122 0.95586 0.96347 1.69946 1.03009 1.44363 1.35692 0.86535 0.79091 0.79964 0.82488 1.19665 1.20950 1.20847 1.22100 0.93723 0.96694 1.04262 1.22076 0.95799 0.97731 0.91492 0.91529 0.91486 0.95824 0.94033 0.91076 0.90852 0.89783 0.77734 0.94196 0.90024 0.84682 0.93141 0.90378 0.95548 0.94462 0.92826 0.90422 0.89793 0.94462 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.59 60.06 0.58 0.78 16 2 N -0.54 -5.38 4.91 -242.95 -1.19 -6.57 16 3 C 0.06 0.56 5.33 -3.83 -0.02 0.54 16 4 C -0.10 -0.93 5.11 -26.65 -0.14 -1.07 16 5 C 0.13 1.32 0.79 -90.50 -0.07 1.25 16 6 O -0.56 -5.65 11.84 -35.23 -0.42 -6.06 16 7 C 0.03 0.35 4.90 -3.83 -0.02 0.33 16 8 N -0.69 -7.98 5.28 -113.78 -0.60 -8.58 16 9 C 0.07 0.94 5.05 -3.82 -0.02 0.92 16 10 C 0.01 0.17 2.36 -93.40 -0.22 -0.05 16 11 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 12 C 0.25 5.14 13.66 -20.79 -0.28 4.86 16 13 N -0.48 -10.59 18.53 42.11 0.78 -9.81 16 14 C 0.03 0.70 4.42 -27.89 -0.12 0.58 16 15 C -0.53 -13.83 8.60 -34.44 -0.30 -14.12 16 16 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.13 -1.37 4.83 -26.65 -0.13 -1.50 16 24 C 0.06 0.58 5.33 -3.83 -0.02 0.56 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.04 0.43 7.76 -51.93 -0.40 0.03 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.37 2.97 7.63 45.56 0.35 3.31 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.34 3.38 7.32 -39.29 -0.29 3.09 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.08 0.96 7.57 -51.93 -0.39 0.56 16 43 H 0.04 0.40 7.76 -51.93 -0.40 -0.01 16 44 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -30.39 356.07 -8.22 -38.61 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.01 Total: 0.87 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.86 Total: -5.33 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.28 Total: -49.59 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.42 Total: -6.06 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.39 -8.22 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336784818.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.690 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds