Wall clock time and date at job start Tue Mar 31 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46852 * 110.99846 * 2 1 4 4 C 1.53032 * 109.52464 * 185.84091 * 3 2 1 5 5 C 1.53115 * 109.27728 * 300.81825 * 4 3 2 6 6 O 1.42899 * 109.52518 * 297.68487 * 5 4 3 7 7 C 1.53002 * 109.52559 * 177.56070 * 5 4 3 8 8 N 1.46901 * 109.47515 * 185.12648 * 7 5 4 9 9 C 1.46895 * 111.00119 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 8.19069 * 140.72201 * 93.55355 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.53126 * 109.21496 * 57.62385 * 5 4 3 24 24 C 1.46840 * 111.00300 * 124.20639 * 2 1 3 25 25 H 1.08997 * 109.47061 * 60.00712 * 1 2 3 26 26 H 1.09004 * 109.46331 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47107 * 299.99938 * 1 2 3 28 28 H 1.08998 * 109.46226 * 65.82033 * 3 2 1 29 29 H 1.09003 * 109.44934 * 305.84962 * 3 2 1 30 30 H 1.09002 * 109.50387 * 180.88221 * 4 3 2 31 31 H 1.09000 * 109.50559 * 60.75743 * 4 3 2 32 32 H 0.96695 * 114.00338 * 179.87240 * 6 5 4 33 33 H 1.09002 * 109.47245 * 65.12334 * 7 5 4 34 34 H 1.08996 * 109.47056 * 305.12608 * 7 5 4 35 35 H 1.00903 * 110.99388 * 56.04390 * 8 7 5 36 36 H 1.08998 * 109.47324 * 59.99878 * 9 8 7 37 37 H 1.09002 * 109.47421 * 300.00055 * 9 8 7 38 38 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 39 39 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.50179 * 62.31905 * 23 5 4 42 42 H 1.08998 * 109.50089 * 182.43572 * 23 5 4 43 43 H 1.09006 * 109.46475 * 294.18113 * 24 2 1 44 44 H 1.09001 * 109.46478 * 54.15625 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5372 1.0143 6 8 3.8184 1.1915 2.2487 7 6 5.6361 0.4452 0.8405 8 7 6.1971 -0.4214 1.8857 9 6 7.6554 -0.5338 1.7496 10 6 8.2022 -1.4414 2.8532 11 1 7.6875 -2.4018 2.8222 12 6 7.9811 -0.8084 4.1636 13 7 7.8093 -0.3214 5.1754 14 6 9.7013 -1.6591 2.6386 15 6 10.2152 -2.6494 3.6516 16 1 9.5401 -3.0807 4.3759 17 6 11.5462 -3.0096 3.6499 18 7 12.3683 -2.4847 2.7677 19 14 12.1816 -4.2429 4.9007 20 1 12.0660 -5.6153 4.3455 21 1 13.6053 -3.9504 5.2051 22 1 11.3787 -4.1435 6.1460 23 6 3.5184 -0.8714 1.0225 24 6 1.9953 -0.7707 1.1337 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7324 1.8609 0.9375 29 1 1.5633 1.9255 -0.8331 30 1 3.9098 2.3514 -0.1310 31 1 3.7813 0.8568 -1.0906 32 1 4.1676 0.7392 3.0288 33 1 6.0721 1.4409 0.9214 34 1 5.8648 0.0270 -0.1397 35 1 5.7618 -1.3316 1.8728 36 1 8.1058 0.4550 1.8365 37 1 7.8978 -0.9590 0.7756 38 1 10.2268 -0.7116 2.7577 39 1 9.8721 -2.0455 1.6338 40 1 13.3047 -2.7378 2.7667 41 1 3.7816 -1.3845 0.0976 42 1 3.9103 -1.4291 1.8730 43 1 1.7325 -0.2707 2.0660 44 1 1.5637 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336784819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:59 Heat of formation + Delta-G solvation = -35.599983 kcal Electronic energy + Delta-G solvation = -22190.320035 eV Core-core repulsion = 18948.827756 eV Total energy + Delta-G solvation = -3241.492279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.00755 -37.44769 -36.42414 -34.81099 -33.51084 -32.39495 -31.36825 -31.02700 -28.03774 -26.22041 -24.52102 -23.65462 -22.46919 -21.86787 -21.44043 -19.88510 -17.30517 -16.49927 -16.47550 -16.09581 -15.38624 -15.32087 -14.92776 -14.73422 -14.58254 -14.33415 -13.76368 -13.63111 -13.33623 -12.83324 -12.74801 -12.43395 -12.33088 -12.09436 -12.00032 -11.81537 -11.66026 -11.57161 -11.34403 -11.27719 -11.22822 -11.08233 -10.73471 -10.61912 -10.36726 -10.26950 -9.86523 -9.54712 -9.24414 -8.55778 -8.48988 -8.41239 -6.11955 -4.15264 3.27459 3.34681 3.39230 3.67897 3.70779 3.80198 4.06999 4.19544 4.39735 4.51024 4.66295 4.71172 4.87065 4.94682 5.08621 5.11137 5.23336 5.26239 5.28068 5.33853 5.40549 5.49566 5.56302 5.57127 5.61525 5.68698 5.71606 5.81033 5.86993 5.93964 5.97933 6.08562 6.34121 6.45321 6.80229 6.82778 6.97364 7.35839 7.40098 7.50075 7.70844 7.83126 8.20321 8.55571 8.89483 9.50381 10.98945 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034901 B = 0.002948 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.083656 B = 9494.218759 C = 9537.147095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.102 4.102 5 C 0.138 3.862 6 O -0.557 6.557 7 C 0.033 3.967 8 N -0.696 5.696 9 C 0.067 3.933 10 C 0.010 3.990 11 H 0.098 0.902 12 C 0.254 3.746 13 N -0.478 5.478 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.146 4.146 24 C 0.060 3.940 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.024 0.976 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.384 0.616 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.340 0.660 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.040 0.960 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.574 4.393 -9.645 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.069 4.069 4 C -0.140 4.140 5 C 0.097 3.903 6 O -0.364 6.364 7 C -0.096 4.096 8 N -0.328 5.328 9 C -0.062 4.062 10 C -0.012 4.012 11 H 0.116 0.884 12 C -0.063 4.063 13 N -0.154 5.154 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.184 4.184 24 C -0.068 4.068 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.233 0.767 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.159 0.841 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.751 5.827 -8.532 23.181 hybrid contribution 0.722 -1.540 0.596 1.802 sum -20.029 4.287 -7.936 21.966 Atomic orbital electron populations 1.22330 0.87465 1.01938 1.00550 1.61973 1.07449 1.14023 1.43512 1.21997 0.95019 0.89017 1.00828 1.21553 0.94766 1.00754 0.96905 1.21168 0.92144 0.91422 0.85610 1.86412 1.79939 1.54257 1.15813 1.22642 0.94709 0.98894 0.93393 1.60538 1.05507 1.17805 1.48949 1.22064 0.86327 1.00641 0.97209 1.19210 1.02255 0.96387 0.83390 0.88387 1.28851 0.90761 0.92373 0.94292 1.80991 1.11403 1.10713 1.12339 1.19166 0.85101 0.98069 0.98383 1.21139 0.94302 1.25075 1.15981 0.92500 1.24959 0.96934 0.96370 0.95734 1.69939 1.04587 1.43252 1.35236 0.86586 0.78200 0.81450 0.81821 1.20473 1.21131 1.19840 1.22295 0.95316 0.97580 1.03233 1.21984 0.95041 0.97884 0.91858 0.91464 0.91474 0.95745 0.93884 0.91035 0.90682 0.89964 0.76707 0.90147 0.94183 0.84126 0.90423 0.93133 0.95544 0.94464 0.92771 0.90370 0.90430 0.94174 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.59 60.07 0.58 0.77 16 2 N -0.54 -5.03 4.91 -242.96 -1.19 -6.22 16 3 C 0.06 0.55 5.33 -3.83 -0.02 0.53 16 4 C -0.10 -0.93 5.11 -26.66 -0.14 -1.07 16 5 C 0.14 1.36 0.79 -90.49 -0.07 1.29 16 6 O -0.56 -6.52 11.85 -35.23 -0.42 -6.94 16 7 C 0.03 0.35 4.94 -3.82 -0.02 0.33 16 8 N -0.70 -8.18 5.73 -113.78 -0.65 -8.83 16 9 C 0.07 0.94 5.05 -3.83 -0.02 0.92 16 10 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 11 H 0.10 1.58 8.14 -51.92 -0.42 1.16 16 12 C 0.25 5.16 13.67 -20.76 -0.28 4.88 16 13 N -0.48 -10.63 18.54 42.15 0.78 -9.85 16 14 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 15 C -0.53 -13.87 8.60 -34.44 -0.30 -14.17 16 16 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 19 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.15 -1.31 4.55 -26.64 -0.12 -1.43 16 24 C 0.06 0.55 5.33 -3.83 -0.02 0.53 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.04 0.46 7.76 -51.93 -0.40 0.06 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.38 4.30 8.66 45.56 0.39 4.69 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.34 3.58 6.68 -39.29 -0.26 3.32 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.68 6.67 -51.93 -0.35 0.33 16 43 H 0.04 0.41 7.76 -51.93 -0.40 0.01 16 44 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -30.15 355.79 -8.15 -38.29 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.89 Total: 1.97 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -0.85 Total: -5.28 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.33 Total: -49.56 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.42 Total: -6.94 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.15 -8.15 -38.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336784819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.692 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds