Wall clock time and date at job start Tue Mar 31 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.57857 * 2 1 4 4 C 1.53211 * 109.58223 * 120.27163 * 2 1 3 5 5 N 1.47304 * 108.80423 * 119.79205 * 4 2 1 6 6 C 1.47321 * 110.08017 * 299.14329 * 5 4 2 7 7 C 1.53213 * 108.79930 * 60.85998 * 6 5 4 8 8 N 1.47309 * 109.58024 * 239.58917 * 2 1 3 9 9 C 1.47564 * 110.23382 * 179.39691 * 8 2 1 10 10 C 1.47273 * 110.15989 * 60.80908 * 5 4 2 11 11 H 1.09003 * 109.58376 * 179.26345 * 10 5 4 12 12 C 1.50697 * 109.58022 * 58.99397 * 10 5 4 13 13 O 1.21286 * 120.00249 * 3.71586 * 12 10 5 14 14 N 1.34778 * 120.00192 * 183.72130 * 12 10 5 15 15 C 1.46497 * 120.00054 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47281 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47503 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47092 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00124 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99922 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00178 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99815 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47167 * 269.99893 * 22 20 18 24 24 H 1.48507 * 109.47269 * 30.00126 * 22 20 18 25 25 H 1.48500 * 109.46860 * 150.00083 * 22 20 18 26 26 H 1.09003 * 109.47006 * 299.72870 * 1 2 3 27 27 H 1.08996 * 109.47309 * 59.72821 * 1 2 3 28 28 H 1.09002 * 109.47103 * 179.73262 * 1 2 3 29 29 H 1.09001 * 109.57972 * 359.97438 * 4 2 1 30 30 H 1.08998 * 109.57837 * 239.58985 * 4 2 1 31 31 H 1.09002 * 109.58489 * 180.65384 * 6 5 4 32 32 H 1.08996 * 109.58106 * 301.06710 * 6 5 4 33 33 H 1.09000 * 109.58091 * 240.20328 * 7 6 5 34 34 H 1.09002 * 109.57909 * 119.79576 * 7 6 5 35 35 H 1.09000 * 109.61646 * 300.99933 * 9 8 2 36 36 H 1.08995 * 109.69586 * 180.49639 * 9 8 2 37 37 H 0.96997 * 119.99800 * 359.97438 * 14 12 10 38 38 H 1.08998 * 109.47481 * 59.99828 * 15 14 12 39 39 H 1.09001 * 109.47235 * 299.99573 * 15 14 12 40 40 H 1.09002 * 109.47327 * 59.99298 * 16 15 14 41 41 H 1.09001 * 109.46711 * 299.99985 * 16 15 14 42 42 H 1.08995 * 109.46774 * 59.99808 * 17 16 15 43 43 H 1.08998 * 109.46714 * 299.99875 * 17 16 15 44 44 H 0.96992 * 119.99959 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2467 5 7 2.8554 -1.8812 0.8225 6 6 2.0340 -2.8147 0.0324 7 6 1.5206 -2.0870 -1.2143 8 7 2.0237 -0.7026 -1.1970 9 6 3.4992 -0.6985 -1.2189 10 6 4.0098 -1.4254 0.0297 11 1 4.6108 -2.2846 -0.2681 12 6 4.8488 -0.4838 0.8546 13 8 4.5585 -0.2689 2.0125 14 7 5.9217 0.1197 0.3058 15 6 6.7369 1.0355 1.1076 16 6 7.8835 1.5790 0.2528 17 6 8.7346 2.5360 1.0900 18 6 9.8644 3.0708 0.2481 19 1 9.9655 2.7590 -0.7809 20 6 10.7689 3.9581 0.7917 21 7 11.7546 4.4253 0.0569 22 14 10.5935 4.4979 2.5714 23 1 9.7400 5.7112 2.6389 24 1 9.9664 3.4070 3.3601 25 1 11.9348 4.8046 3.1301 26 1 -0.3633 0.5096 0.8924 27 1 -0.3634 0.5180 -0.8875 28 1 -0.3633 -1.0277 -0.0048 29 1 1.1984 -1.0743 1.8414 30 1 2.6557 -0.0484 1.8399 31 1 2.6392 -3.6703 -0.2673 32 1 1.1888 -3.1543 0.6311 33 1 0.4306 -2.0796 -1.2101 34 1 1.8810 -2.5956 -2.1085 35 1 3.8623 0.3292 -1.2174 36 1 3.8547 -1.2125 -2.1119 37 1 6.1540 -0.0523 -0.6201 38 1 7.1453 0.5018 1.9657 39 1 6.1184 1.8631 1.4550 40 1 7.4755 2.1125 -0.6057 41 1 8.5019 0.7512 -0.0943 42 1 9.1426 2.0027 1.9486 43 1 8.1160 3.3637 1.4367 44 1 12.3911 5.0492 0.4395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346410689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:13 Heat of formation + Delta-G solvation = -11.991951 kcal Electronic energy + Delta-G solvation = -22761.683100 eV Core-core repulsion = 19521.214542 eV Total energy + Delta-G solvation = -3240.468558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.82392 -39.06883 -35.61317 -33.89840 -33.52180 -32.64492 -31.87172 -31.13015 -28.01829 -26.85521 -24.33753 -24.19245 -22.98811 -22.30805 -20.79739 -20.03805 -18.37837 -17.72173 -17.32432 -16.79198 -16.35967 -15.72763 -15.37394 -15.24548 -14.32264 -14.18244 -14.03422 -13.64981 -13.41987 -13.32860 -13.10324 -12.74945 -12.67684 -12.62364 -12.42935 -12.02370 -11.95026 -11.61797 -11.35671 -11.10606 -10.94388 -10.88128 -10.81635 -10.14589 -10.11826 -9.97908 -9.77230 -9.47315 -9.24827 -8.89473 -8.57277 -7.98893 -6.08041 -4.06922 2.62100 3.00914 3.29990 3.37704 3.40659 3.41851 3.83897 4.31257 4.39438 4.41837 4.42893 4.51614 4.76333 4.88394 4.96014 5.05858 5.11627 5.20414 5.26056 5.29841 5.37985 5.42073 5.48425 5.51672 5.54566 5.61897 5.68312 5.83332 5.87289 5.97700 6.25019 6.30316 6.40017 6.41135 6.66282 6.75824 6.76643 6.81838 7.20131 7.33658 7.57467 7.74498 8.27397 8.48418 8.95721 9.54199 11.05223 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035150 B = 0.003101 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.388060 B = 9027.717911 C = 9145.994489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.033 3.967 3 H 0.087 0.913 4 C 0.001 3.999 5 N -0.492 5.492 6 C 0.011 3.989 7 C 0.005 3.995 8 N -0.508 5.508 9 C 0.018 3.982 10 C 0.021 3.979 11 H 0.113 0.887 12 C 0.517 3.483 13 O -0.526 6.526 14 N -0.724 5.724 15 C 0.116 3.884 16 C -0.113 4.113 17 C -0.011 4.011 18 C -0.523 4.523 19 H 0.072 0.928 20 C 0.067 3.933 21 N -0.903 5.903 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.264 1.264 25 H -0.287 1.287 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.399 0.601 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.683 -14.085 -2.812 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 H 0.105 0.895 4 C -0.128 4.128 5 N -0.213 5.213 6 C -0.119 4.119 7 C -0.125 4.125 8 N -0.230 5.230 9 C -0.113 4.113 10 C -0.093 4.093 11 H 0.131 0.869 12 C 0.302 3.698 13 O -0.402 6.402 14 N -0.376 5.376 15 C -0.007 4.007 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.561 4.561 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.542 5.542 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.189 1.189 25 H -0.213 1.213 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.032 0.968 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.728 -13.797 -1.944 26.659 hybrid contribution 0.256 0.240 0.382 0.519 sum -22.471 -13.558 -1.562 26.291 Atomic orbital electron populations 1.21881 0.93616 1.01958 1.02315 1.22515 0.96538 0.98900 0.89742 0.89467 1.23361 0.98543 0.93679 0.97211 1.63636 1.07006 1.14721 1.35926 1.22948 0.98250 0.95987 0.94683 1.22992 1.01576 0.89240 0.98705 1.63977 1.07230 1.13995 1.37771 1.23026 0.88735 1.02389 0.97123 1.22435 0.94108 0.98999 0.93726 0.86949 1.20203 0.81089 0.80833 0.87704 1.90629 1.69522 1.62830 1.17243 1.46143 1.28675 1.46767 1.15985 1.21654 0.92437 0.91946 0.94664 1.21706 0.94911 0.99766 0.98717 1.19499 0.95168 0.94212 0.95998 1.21092 1.09419 1.26154 0.99388 0.90999 1.25028 0.94936 0.95712 0.97781 1.69907 1.15511 1.32175 1.36583 0.86778 0.77422 0.79498 0.85620 1.20236 1.18899 1.21347 0.91825 0.91881 0.92514 0.90180 0.87006 0.90057 0.89827 0.89595 0.90057 0.89281 0.88975 0.76673 0.91734 0.91829 0.92108 0.92056 0.96316 0.96770 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.65 37.16 0.32 -0.76 16 2 C 0.03 0.32 3.05 -67.38 -0.21 0.12 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.00 0.01 5.35 -3.49 -0.02 0.00 16 5 N -0.49 -5.46 5.03 -226.62 -1.14 -6.60 16 6 C 0.01 0.09 6.14 -3.48 -0.02 0.07 16 7 C 0.00 0.04 5.75 -3.49 -0.02 0.02 16 8 N -0.51 -4.73 5.25 -224.99 -1.18 -5.92 16 9 C 0.02 0.16 5.56 -3.34 -0.02 0.14 16 10 C 0.02 0.22 2.86 -68.54 -0.20 0.03 16 11 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 12 C 0.52 7.11 6.59 -10.99 -0.07 7.03 16 13 O -0.53 -9.23 13.91 5.55 0.08 -9.15 16 14 N -0.72 -9.39 5.20 -60.30 -0.31 -9.71 16 15 C 0.12 1.86 5.67 -4.04 -0.02 1.83 16 16 C -0.11 -2.05 5.27 -26.73 -0.14 -2.20 16 17 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 18 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 19 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 22 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 24 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.40 6.27 -51.93 -0.33 0.07 16 29 H 0.08 0.82 7.61 -51.93 -0.40 0.43 16 30 H 0.11 1.58 5.34 -51.93 -0.28 1.30 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.58 6.15 -51.93 -0.32 0.26 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.89 7.38 -51.93 -0.38 0.50 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 4.12 8.27 -40.82 -0.34 3.78 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 43 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -32.56 335.46 -9.80 -42.36 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.46 Total: 1.05 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.94 Total: -7.20 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -1.86 Total: -49.11 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.56 -9.80 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346410689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.365 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds