Wall clock time and date at job start Tue Mar 31 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47074 * 2 1 4 4 C 1.46500 * 119.99473 * 274.79293 * 3 2 1 5 5 C 1.50697 * 109.47367 * 270.00208 * 4 3 2 6 6 H 1.08005 * 120.00073 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00196 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99900 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00181 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47164 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47374 * 120.00041 * 9 7 5 12 12 H 1.48509 * 109.47373 * 240.00136 * 9 7 5 13 13 C 1.34772 * 120.00428 * 94.79684 * 3 2 1 14 14 O 1.21284 * 119.99584 * 4.95467 * 13 3 2 15 15 C 1.50698 * 120.00117 * 184.95020 * 13 3 2 16 16 H 1.09005 * 109.57777 * 52.05279 * 15 13 3 17 17 C 1.53205 * 109.69466 * 291.71137 * 15 13 3 18 18 N 1.47318 * 108.80014 * 240.14337 * 17 15 13 19 19 C 1.47274 * 110.15701 * 60.80776 * 18 17 15 20 20 C 1.53234 * 108.79988 * 299.17947 * 19 18 17 21 21 N 1.47269 * 108.80864 * 0.02562 * 20 19 18 22 22 C 1.47318 * 110.15380 * 299.18015 * 21 20 19 23 23 C 1.47308 * 110.07951 * 299.13647 * 18 17 15 24 24 H 1.09001 * 109.58494 * 300.92316 * 23 18 17 25 25 C 1.52997 * 109.58388 * 180.64798 * 23 18 17 26 26 H 1.08998 * 109.47239 * 175.02387 * 1 2 3 27 27 H 1.09004 * 109.47181 * 295.02717 * 1 2 3 28 28 H 1.08998 * 109.47179 * 55.01969 * 1 2 3 29 29 H 1.08992 * 109.47268 * 239.99441 * 2 1 3 30 30 H 1.09004 * 109.46851 * 119.99300 * 2 1 3 31 31 H 1.09006 * 109.47606 * 30.00282 * 4 3 2 32 32 H 1.08998 * 109.46961 * 150.00296 * 4 3 2 33 33 H 0.96995 * 119.99802 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.58194 * 359.93705 * 17 15 13 35 35 H 1.09002 * 109.58239 * 120.21719 * 17 15 13 36 36 H 1.08996 * 109.58102 * 179.38069 * 19 18 17 37 37 H 1.09000 * 109.57716 * 58.97311 * 19 18 17 38 38 H 1.09004 * 109.58063 * 240.21250 * 20 19 18 39 39 H 1.09000 * 109.57979 * 119.81018 * 20 19 18 40 40 H 1.08992 * 109.58629 * 180.59688 * 22 21 20 41 41 H 1.09000 * 109.58339 * 301.01250 * 22 21 20 42 42 H 1.08998 * 109.47178 * 60.00027 * 25 23 18 43 43 H 1.09001 * 109.47926 * 180.02562 * 25 23 18 44 44 H 1.09006 * 109.47155 * 300.00332 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1625 2.1071 -1.2644 5 6 3.5467 1.8840 -1.8167 6 1 4.2491 1.2639 -1.2794 7 6 3.9170 2.4724 -3.0074 8 7 3.0619 3.2279 -3.6614 9 14 5.6331 2.1965 -3.6916 10 1 6.3966 1.3146 -2.7726 11 1 5.5362 1.5549 -5.0274 12 1 6.3311 3.5011 -3.8185 13 6 2.3350 1.9841 1.1630 14 8 2.3019 1.3562 2.2002 15 6 2.7303 3.4383 1.1748 16 1 1.9749 4.0264 0.6534 17 6 4.0849 3.6107 0.4802 18 7 5.0415 4.1861 1.4416 19 6 5.2096 3.2829 2.5926 20 6 3.8547 3.1107 3.2872 21 7 2.8470 3.9067 2.5664 22 6 3.2147 5.3330 2.5903 23 6 4.5698 5.5055 1.8963 24 1 4.4613 6.1700 1.0391 25 6 5.5788 6.0994 2.8811 26 1 -0.3633 -1.0238 -0.0891 27 1 -0.3634 0.4348 0.9312 28 1 -0.3633 0.5891 -0.8420 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.4235 1.7435 -1.9784 32 1 2.0075 3.1721 -1.0916 33 1 3.3225 3.6421 -4.4989 34 1 4.4473 2.6406 0.1405 35 1 3.9752 4.2793 -0.3736 36 1 5.9269 3.7122 3.2920 37 1 5.5687 2.3136 2.2468 38 1 3.9259 3.4580 4.3180 39 1 3.5679 2.0592 3.2730 40 1 2.4579 5.9144 2.0637 41 1 3.2875 5.6743 3.6229 42 1 6.5451 6.2100 2.3889 43 1 5.2280 7.0753 3.2168 44 1 5.6823 5.4359 3.7397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350944080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:51 Heat of formation + Delta-G solvation = 2.702261 kcal Electronic energy + Delta-G solvation = -24590.955763 eV Core-core repulsion = 21351.124394 eV Total energy + Delta-G solvation = -3239.831369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17731 -38.59877 -35.36513 -33.30649 -32.79389 -32.10149 -31.26538 -29.89011 -27.26484 -27.01087 -23.78259 -23.35877 -23.09186 -22.45273 -21.60306 -18.79576 -17.58420 -17.16209 -16.49805 -16.20236 -15.74228 -15.55362 -14.82319 -14.49506 -13.94562 -13.59214 -13.31099 -12.95731 -12.86494 -12.70023 -12.58008 -12.43332 -12.33213 -11.97499 -11.82972 -11.71009 -11.35714 -11.25727 -11.13291 -11.00940 -10.79635 -10.78646 -10.45323 -10.30907 -10.14872 -10.02333 -9.66312 -9.42505 -8.75659 -8.57732 -7.75890 -7.26468 -6.22734 -4.29026 3.20936 3.29769 3.31663 3.37807 3.70246 4.14384 4.30945 4.54273 4.85753 5.07467 5.10133 5.14339 5.33689 5.40155 5.44311 5.61458 5.65882 5.68742 5.72943 5.80369 5.84540 5.87681 5.89484 6.02304 6.04029 6.19249 6.24296 6.25677 6.35309 6.43644 6.48055 6.63366 6.70764 6.77316 7.00985 7.09022 7.17137 7.47869 7.53014 7.56089 7.71874 7.99393 8.30879 8.73787 9.00116 9.37896 10.83505 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.008561 C = 0.005985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.766373 B = 3269.809770 C = 4677.459057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.594 5.594 4 C 0.236 3.764 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.281 1.281 13 C 0.528 3.472 14 O -0.560 6.560 15 C 0.032 3.968 16 H 0.103 0.897 17 C 0.032 3.968 18 N -0.513 5.513 19 C 0.009 3.991 20 C -0.009 4.009 21 N -0.498 5.498 22 C 0.016 3.984 23 C 0.033 3.967 24 H 0.086 0.914 25 C -0.138 4.138 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 2.565 8.875 9.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.325 5.325 4 C 0.116 3.884 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.134 4.134 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.207 1.207 13 C 0.316 3.684 14 O -0.441 6.441 15 C -0.082 4.082 16 H 0.121 0.879 17 C -0.098 4.098 18 N -0.234 5.234 19 C -0.121 4.121 20 C -0.138 4.138 21 N -0.219 5.219 22 C -0.114 4.114 23 C -0.077 4.077 24 H 0.104 0.896 25 C -0.196 4.196 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.490 2.343 9.205 9.511 hybrid contribution 0.851 0.081 -0.749 1.136 sum 1.341 2.424 8.456 8.898 Atomic orbital electron populations 1.22110 0.96845 1.01269 1.01916 1.21233 0.93372 0.83773 1.02538 1.48197 1.62736 1.13587 1.07949 1.19468 0.97460 0.92124 0.79378 1.21435 0.98093 1.31210 1.06485 0.91974 1.24882 0.97444 0.94722 0.96396 1.69926 1.34860 1.31600 1.16240 0.86510 0.84252 0.78292 0.78922 1.19599 1.20972 1.20716 1.20093 0.76509 0.88477 0.83289 1.90414 1.54935 1.66577 1.32189 1.22265 1.00439 0.94881 0.90566 0.87873 1.23166 0.88603 1.04021 0.93977 1.63998 1.44417 1.02146 1.12881 1.22907 0.98013 0.97634 0.93541 1.23398 0.90386 1.03248 0.96758 1.63686 1.44479 1.01999 1.11747 1.22999 0.96578 0.90320 1.01484 1.22455 0.94435 0.92345 0.98511 0.89594 1.21860 0.99310 0.99873 0.98567 0.92401 0.93010 0.92433 0.90618 0.90850 0.94561 0.94563 0.92542 0.87127 0.88752 0.90724 0.90689 0.91581 0.85821 0.90550 0.90290 0.92080 0.92413 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 10.24 37.16 0.38 -2.19 16 2 C 0.11 2.08 6.22 -4.04 -0.03 2.05 16 3 N -0.59 -12.20 2.46 -175.06 -0.43 -12.63 16 4 C 0.24 5.33 4.75 -5.20 -0.02 5.31 16 5 C -0.53 -13.06 6.74 -34.44 -0.23 -13.29 16 6 H 0.06 1.57 7.19 -52.48 -0.38 1.20 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -23.49 13.29 55.43 0.74 -22.75 16 9 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.53 10.95 6.53 -10.99 -0.07 10.87 16 14 O -0.56 -12.35 12.93 5.55 0.07 -12.27 16 15 C 0.03 0.60 2.00 -68.55 -0.14 0.47 16 16 H 0.10 1.99 7.16 -51.93 -0.37 1.61 16 17 C 0.03 0.62 3.84 -3.49 -0.01 0.60 16 18 N -0.51 -8.83 5.24 -225.24 -1.18 -10.01 16 19 C 0.01 0.14 5.76 -3.50 -0.02 0.12 16 20 C -0.01 -0.15 5.71 -3.50 -0.02 -0.17 16 21 N -0.50 -8.66 5.11 -226.64 -1.16 -9.82 16 22 C 0.02 0.24 5.80 -3.48 -0.02 0.22 16 23 C 0.03 0.48 3.04 -67.38 -0.21 0.28 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 25 C -0.14 -1.65 8.63 37.16 0.32 -1.33 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 30 H 0.07 1.35 7.23 -51.93 -0.38 0.97 16 31 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.04 0.85 5.97 -51.93 -0.31 0.54 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.11 2.44 5.15 -51.93 -0.27 2.17 16 35 H 0.09 1.98 8.09 -51.93 -0.42 1.55 16 36 H 0.07 1.05 6.18 -51.93 -0.32 0.73 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.12 2.39 4.95 -51.96 -0.26 2.13 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.03 7.61 -51.93 -0.40 0.63 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.65 6.32 -51.93 -0.33 0.32 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -26.85 328.19 -9.40 -36.25 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.20 Total: 6.49 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -0.17 Total: 4.59 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -2.03 Total: -55.20 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.85 -9.40 -36.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350944080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.956 kcal (2) G-P(sol) polarization free energy of solvation -26.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds