Wall clock time and date at job start Tue Mar 31 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47443 * 2 1 4 4 C 1.46499 * 119.99859 * 274.80197 * 3 2 1 5 5 C 1.50699 * 109.47678 * 269.99996 * 4 3 2 6 6 H 1.08007 * 119.99584 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00693 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99610 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00265 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47236 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47266 * 119.99744 * 9 7 5 12 12 H 1.48506 * 109.46854 * 240.00006 * 9 7 5 13 13 C 1.34777 * 120.00414 * 94.80617 * 3 2 1 14 14 O 1.21280 * 120.00441 * 175.21668 * 13 3 2 15 15 C 1.50701 * 119.99343 * 355.48697 * 13 3 2 16 16 H 1.09006 * 109.58417 * 307.96026 * 15 13 3 17 17 C 1.53231 * 109.58459 * 68.37616 * 15 13 3 18 18 N 1.47273 * 108.80495 * 119.80509 * 17 15 13 19 19 C 1.47322 * 110.15541 * 60.80143 * 18 17 15 20 20 C 1.53202 * 108.80408 * 299.18620 * 19 18 17 21 21 N 1.47272 * 109.57961 * 187.69676 * 15 13 3 22 22 C 1.47322 * 110.15702 * 301.00198 * 21 15 13 23 23 C 1.47319 * 110.15510 * 299.18306 * 18 17 15 24 24 H 1.09002 * 109.68990 * 180.66207 * 23 18 17 25 25 C 1.52995 * 109.58033 * 301.00756 * 23 18 17 26 26 H 1.09008 * 109.47038 * 300.00174 * 1 2 3 27 27 H 1.08996 * 109.47251 * 59.99949 * 1 2 3 28 28 H 1.09002 * 109.47677 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46611 * 239.99998 * 2 1 3 30 30 H 1.09002 * 109.46952 * 120.00357 * 2 1 3 31 31 H 1.09005 * 109.47582 * 30.00291 * 4 3 2 32 32 H 1.08999 * 109.47144 * 149.99774 * 4 3 2 33 33 H 0.96995 * 120.00084 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.57888 * 239.60269 * 17 15 13 35 35 H 1.09002 * 109.57953 * 0.02562 * 17 15 13 36 36 H 1.08998 * 109.58101 * 58.98195 * 19 18 17 37 37 H 1.09004 * 109.58066 * 179.38797 * 19 18 17 38 38 H 1.09009 * 109.58278 * 240.21066 * 20 19 18 39 39 H 1.08997 * 109.58420 * 119.80816 * 20 19 18 40 40 H 1.09003 * 109.57907 * 58.98331 * 22 21 15 41 41 H 1.08996 * 109.58328 * 179.38974 * 22 21 15 42 42 H 1.09004 * 109.46861 * 179.32096 * 25 23 18 43 43 H 1.08996 * 109.47477 * 299.31502 * 25 23 18 44 44 H 1.09001 * 109.47246 * 59.32228 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1624 2.1071 -1.2643 5 6 3.5466 1.8841 -1.8168 6 1 4.2487 1.2632 -1.2801 7 6 3.9168 2.4726 -3.0075 8 7 3.0620 3.2290 -3.6608 9 14 5.6323 2.1955 -3.6927 10 1 6.3955 1.3126 -2.7743 11 1 5.5342 1.5544 -5.0286 12 1 6.3312 3.4996 -3.8195 13 6 2.3352 1.9839 1.1630 14 8 2.8209 3.0952 1.1575 15 6 2.0916 1.2745 2.4701 16 1 1.0596 0.9257 2.5097 17 6 3.0451 0.0813 2.5924 18 7 3.8872 0.2669 3.7863 19 6 3.0474 0.3297 4.9950 20 6 2.0943 1.5229 4.8727 21 7 2.3430 2.1996 3.5881 22 6 3.7303 2.6929 3.5367 23 6 4.6835 1.4998 3.6591 24 1 5.3122 1.6235 4.5409 25 6 5.5629 1.4156 2.4099 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.4233 1.7437 -1.9783 32 1 2.0075 3.1721 -1.0914 33 1 3.3222 3.6427 -4.4986 34 1 2.4686 -0.8384 2.6914 35 1 3.6763 0.0257 1.7055 36 1 2.4707 -0.5906 5.0874 37 1 3.6804 0.4562 5.8734 38 1 2.2727 2.2186 5.6928 39 1 1.0630 1.1717 4.9070 40 1 3.9021 3.2019 2.5883 41 1 3.9029 3.3845 4.3613 42 1 6.1423 2.3336 2.3110 43 1 6.2403 0.5664 2.4989 44 1 4.9327 1.2871 1.5299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350944081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:53 Heat of formation + Delta-G solvation = 8.296042 kcal Electronic energy + Delta-G solvation = -24534.100421 eV Core-core repulsion = 21294.511617 eV Total energy + Delta-G solvation = -3239.588804 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.50100 -38.47834 -35.44421 -33.49756 -32.89030 -32.15968 -31.34467 -30.07875 -27.38034 -26.74184 -24.33342 -23.93673 -22.90040 -22.40677 -21.69490 -18.86905 -18.04092 -17.19032 -16.48900 -16.45129 -15.93266 -15.36752 -14.94999 -14.38131 -14.12466 -13.65657 -13.49198 -13.34153 -12.99192 -12.94882 -12.79712 -12.64569 -12.33981 -12.04222 -11.84318 -11.67946 -11.54431 -11.26078 -11.21463 -10.90650 -10.81282 -10.75358 -10.56802 -10.47804 -10.35477 -10.06469 -9.73672 -9.61171 -8.66534 -8.44140 -7.70628 -7.52633 -6.04686 -4.09132 3.29058 3.33562 3.37480 3.41233 3.58915 3.86087 4.29113 4.43807 4.65107 4.78550 4.84705 4.94310 5.12686 5.23905 5.30204 5.34490 5.41869 5.46184 5.49149 5.54003 5.60770 5.64397 5.75669 5.79463 5.81570 5.90992 5.98302 6.07009 6.20671 6.23100 6.38345 6.45439 6.50545 6.69650 6.82028 7.05466 7.18050 7.26409 7.44820 7.56072 7.91801 8.22938 8.41442 8.90228 9.09903 9.56019 11.03418 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020098 B = 0.006288 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.815546 B = 4451.589670 C = 5098.697562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 N -0.594 5.594 4 C 0.248 3.752 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.517 3.483 14 O -0.521 6.521 15 C 0.023 3.977 16 H 0.102 0.898 17 C 0.017 3.983 18 N -0.511 5.511 19 C 0.010 3.990 20 C 0.010 3.990 21 N -0.494 5.494 22 C -0.010 4.010 23 C 0.039 3.961 24 H 0.081 0.919 25 C -0.143 4.143 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.136 0.864 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 -8.162 14.952 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.303 3.697 14 O -0.398 6.398 15 C -0.091 4.091 16 H 0.120 0.880 17 C -0.113 4.113 18 N -0.233 5.233 19 C -0.120 4.120 20 C -0.121 4.121 21 N -0.215 5.215 22 C -0.139 4.139 23 C -0.071 4.071 24 H 0.099 0.901 25 C -0.200 4.200 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.153 0.847 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.115 -7.446 14.753 16.661 hybrid contribution 0.768 -0.230 -0.396 0.894 sum -1.347 -7.676 14.358 16.337 Atomic orbital electron populations 1.22204 0.96752 1.01377 1.02400 1.21598 0.93776 0.84369 1.02865 1.48203 1.63348 1.13243 1.07843 1.19261 0.96808 0.92875 0.78128 1.21433 0.98453 1.30366 1.05845 0.92484 1.24922 0.97410 0.94963 0.96775 1.69939 1.34926 1.32195 1.16315 0.86483 0.84428 0.78050 0.78709 1.19785 1.20999 1.20909 1.19894 0.79017 0.86387 0.84427 1.90496 1.43058 1.20094 1.86181 1.22441 1.01220 0.93463 0.91993 0.87996 1.23022 0.95857 0.97146 0.95237 1.63979 1.22032 1.35159 1.02081 1.22906 0.96170 0.99033 0.93899 1.22948 1.00005 0.96175 0.92928 1.63655 1.24519 1.32765 1.00554 1.23643 0.86160 0.96964 1.07150 1.22453 0.95293 0.89508 0.99833 0.90094 1.21885 0.99456 1.01814 0.96877 0.93129 0.91904 0.92197 0.89979 0.91292 0.94999 0.94028 0.92800 0.89710 0.88685 0.90312 0.90355 0.90125 0.90429 0.84695 0.91168 0.91808 0.92473 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.21 37.16 0.38 -1.88 16 2 C 0.10 1.54 5.67 -4.05 -0.02 1.52 16 3 N -0.59 -12.19 2.46 -175.06 -0.43 -12.62 16 4 C 0.25 6.36 5.15 -5.19 -0.03 6.33 16 5 C -0.52 -14.47 9.39 -34.44 -0.32 -14.80 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.52 10.54 5.78 -10.98 -0.06 10.48 16 14 O -0.52 -12.71 13.05 5.56 0.07 -12.64 16 15 C 0.02 0.36 2.06 -68.54 -0.14 0.22 16 16 H 0.10 1.46 7.16 -51.93 -0.37 1.08 16 17 C 0.02 0.25 3.62 -3.50 -0.01 0.23 16 18 N -0.51 -6.89 5.24 -225.24 -1.18 -8.07 16 19 C 0.01 0.11 6.13 -3.49 -0.02 0.09 16 20 C 0.01 0.11 6.13 -3.49 -0.02 0.09 16 21 N -0.49 -7.71 5.11 -226.62 -1.16 -8.87 16 22 C -0.01 -0.17 5.37 -3.49 -0.02 -0.19 16 23 C 0.04 0.56 3.04 -67.38 -0.21 0.36 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 25 C -0.14 -2.25 8.65 37.16 0.32 -1.93 16 26 H 0.05 0.65 7.38 -51.92 -0.38 0.27 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 30 H 0.07 0.91 4.32 -51.93 -0.22 0.69 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.21 7.49 -51.93 -0.39 0.83 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.08 1.00 7.54 -51.93 -0.39 0.61 16 35 H 0.09 1.54 5.23 -51.93 -0.27 1.27 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.14 2.69 4.40 -51.98 -0.23 2.46 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.24 5.52 -51.93 -0.29 0.95 16 LS Contribution 329.42 15.07 4.96 4.96 Total: -1.00 -31.50 329.42 -9.43 -40.93 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.16 Total: 3.12 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.25 Total: 2.16 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -2.03 Total: -55.23 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.50 -9.43 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350944081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.226 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds