Wall clock time and date at job start Tue Mar 31 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.46662 * 2 1 4 4 C 1.46505 * 120.00184 * 90.00378 * 3 2 1 5 5 C 1.50698 * 109.46939 * 269.99699 * 4 3 2 6 6 H 1.08006 * 119.99963 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99886 * 179.71922 * 5 4 3 8 8 N 1.31510 * 119.99994 * 0.27867 * 7 5 4 9 9 Si 1.86800 * 119.99952 * 180.27327 * 7 5 4 10 10 H 1.48500 * 109.46932 * 60.00336 * 9 7 5 11 11 H 1.48499 * 109.47461 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00703 * 9 7 5 13 13 C 1.34777 * 120.00325 * 269.99809 * 3 2 1 14 14 O 1.21277 * 120.00234 * 180.02562 * 13 3 2 15 15 C 1.50708 * 119.99884 * 0.02562 * 13 3 2 16 16 H 1.09003 * 109.57493 * 53.50400 * 15 13 3 17 17 C 1.53228 * 109.57845 * 293.09791 * 15 13 3 18 18 N 1.47280 * 108.80154 * 240.21432 * 17 15 13 19 19 C 1.47314 * 110.15298 * 299.18346 * 18 17 15 20 20 C 1.53213 * 108.80501 * 60.80552 * 19 18 17 21 21 N 1.47266 * 109.58241 * 173.77773 * 15 13 3 22 22 C 1.47312 * 110.15640 * 58.97649 * 21 15 13 23 23 C 1.47316 * 110.15529 * 60.80170 * 18 17 15 24 24 H 1.08996 * 109.58185 * 58.98155 * 23 18 17 25 25 C 1.53000 * 109.58274 * 179.39062 * 23 18 17 26 26 H 1.09002 * 109.47061 * 299.99443 * 1 2 3 27 27 H 1.08996 * 109.47098 * 60.00100 * 1 2 3 28 28 H 1.09004 * 109.46972 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47061 * 240.00557 * 2 1 3 30 30 H 1.08996 * 109.47098 * 119.99900 * 2 1 3 31 31 H 1.08996 * 109.47578 * 149.99664 * 4 3 2 32 32 H 1.09002 * 109.46749 * 29.99269 * 4 3 2 33 33 H 0.96998 * 119.99790 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.58919 * 0.02562 * 17 15 13 35 35 H 1.08997 * 109.58418 * 120.42485 * 17 15 13 36 36 H 1.08998 * 109.58317 * 301.00827 * 19 18 17 37 37 H 1.09005 * 109.58345 * 180.59665 * 19 18 17 38 38 H 1.09001 * 109.57857 * 240.21317 * 20 19 18 39 39 H 1.08997 * 109.58329 * 119.80378 * 20 19 18 40 40 H 1.09003 * 109.57938 * 180.60412 * 22 21 15 41 41 H 1.09008 * 109.58158 * 301.00887 * 22 21 15 42 42 H 1.09005 * 109.47057 * 59.99772 * 25 23 18 43 43 H 1.08994 * 109.47572 * 180.02562 * 25 23 18 44 44 H 1.08999 * 109.46978 * 300.00363 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0719 1.2688 5 6 1.0066 2.7822 1.7038 6 1 0.1158 2.7253 1.0958 7 6 0.9933 3.5005 2.8806 8 7 2.0782 3.5702 3.6207 9 14 -0.5656 4.3747 3.4237 10 1 -1.6554 3.3810 3.5976 11 1 -0.3196 5.0707 4.7122 12 1 -0.9611 5.3677 2.3928 13 6 2.2429 2.0166 -1.1672 14 8 2.6475 3.1599 -1.1671 15 6 1.9913 1.3064 -2.4724 16 1 0.9755 0.9110 -2.4831 17 6 2.9938 0.1590 -2.6341 18 7 3.7895 0.3919 -3.8514 19 6 2.9109 0.4249 -5.0334 20 6 1.9082 1.5721 -4.8716 21 7 2.1655 2.2501 -3.5894 22 6 3.5295 2.8062 -3.5761 23 6 4.5321 1.6591 -3.7377 24 1 5.1876 1.6216 -2.8676 25 6 5.3652 1.8805 -5.0017 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 3.0643 2.7986 1.1385 32 1 2.5505 1.3452 2.0284 33 1 2.0689 4.0758 4.4485 34 1 3.6535 0.1252 -1.7672 35 1 2.4569 -0.7854 -2.7239 36 1 2.3744 -0.5202 -5.1164 37 1 3.5100 0.5871 -5.9295 38 1 0.8936 1.1738 -4.8772 39 1 2.0291 2.2811 -5.6906 40 1 3.6448 3.5109 -4.3996 41 1 3.7070 3.3159 -2.6289 42 1 4.7058 1.9235 -5.8686 43 1 5.9142 2.8182 -4.9155 44 1 6.0695 1.0573 -5.1215 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350944082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:56 Heat of formation + Delta-G solvation = 7.728052 kcal Electronic energy + Delta-G solvation = -24195.975715 eV Core-core repulsion = 20956.362281 eV Total energy + Delta-G solvation = -3239.613434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49527 -38.56419 -35.44111 -33.57159 -32.84630 -32.24050 -31.25414 -29.98194 -27.85153 -26.63141 -24.14032 -23.95359 -22.80514 -22.65660 -21.74125 -18.83998 -17.97380 -17.16002 -16.81478 -16.52288 -15.98133 -15.29275 -14.88924 -14.44127 -14.12961 -13.71253 -13.52219 -13.18121 -13.06086 -12.89623 -12.79740 -12.60618 -12.35516 -12.14719 -12.12247 -11.84050 -11.55618 -11.22716 -11.20228 -11.01523 -10.85880 -10.74547 -10.54721 -10.47954 -10.40592 -10.02113 -9.76521 -9.55982 -8.72436 -8.41614 -7.73099 -7.52570 -6.02995 -4.06854 3.31650 3.33501 3.37318 3.42363 3.58575 3.82104 4.25888 4.46126 4.62115 4.74404 4.82267 4.86518 5.08241 5.20791 5.24899 5.31971 5.37637 5.39684 5.45714 5.52460 5.59036 5.68442 5.70841 5.77461 5.79922 5.82469 5.84318 5.99819 6.09305 6.11292 6.29972 6.34918 6.59706 6.77161 6.77906 7.03775 7.16379 7.21826 7.44026 7.56604 7.93557 8.24833 8.40750 8.91615 9.09739 9.57851 11.05189 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026734 B = 0.005043 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.120165 B = 5551.207593 C = 5824.189639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.595 5.595 4 C 0.248 3.752 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.518 3.482 14 O -0.524 6.524 15 C 0.023 3.977 16 H 0.105 0.895 17 C 0.023 3.977 18 N -0.511 5.511 19 C 0.006 3.994 20 C 0.011 3.989 21 N -0.493 5.493 22 C -0.006 4.006 23 C 0.034 3.966 24 H 0.086 0.914 25 C -0.138 4.138 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 -9.475 -15.778 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.303 3.697 14 O -0.401 6.401 15 C -0.091 4.091 16 H 0.123 0.877 17 C -0.107 4.107 18 N -0.232 5.232 19 C -0.124 4.124 20 C -0.119 4.119 21 N -0.214 5.214 22 C -0.135 4.135 23 C -0.076 4.076 24 H 0.104 0.896 25 C -0.196 4.196 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.146 0.854 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.251 -8.778 -15.567 18.012 hybrid contribution -1.086 0.398 0.391 1.221 sum 1.165 -8.380 -15.175 17.375 Atomic orbital electron populations 1.22229 0.96316 1.00892 1.03401 1.21550 0.94702 0.83840 1.01904 1.48219 1.63732 1.13193 1.07504 1.19286 0.97531 0.92415 0.77880 1.21395 0.97488 1.31229 1.05964 0.92381 1.24922 0.96431 0.96260 0.96465 1.69917 1.27497 1.41806 1.14292 0.86591 0.83296 0.79917 0.77815 1.20287 1.21223 1.20205 1.19885 0.78721 0.86600 0.84469 1.90506 1.45890 1.17459 1.86246 1.22463 1.01380 0.93359 0.91937 0.87732 1.22945 0.95971 0.97751 0.94057 1.63988 1.24298 1.32550 1.02402 1.22959 0.95452 0.99340 0.94669 1.22928 0.99699 0.96426 0.92876 1.63618 1.26559 1.30390 1.00795 1.23568 0.86320 0.96778 1.06842 1.22489 0.95966 0.89395 0.99725 0.89589 1.21868 0.99542 1.01723 0.96462 0.90486 0.93339 0.92789 0.91705 0.90586 0.93977 0.95043 0.92719 0.89510 0.89476 0.90394 0.89864 0.90405 0.90148 0.90791 0.85420 0.92677 0.91940 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.18 37.16 0.38 -2.20 16 2 C 0.10 1.64 5.71 -4.04 -0.02 1.62 16 3 N -0.59 -12.27 2.46 -175.06 -0.43 -12.70 16 4 C 0.25 6.37 5.20 -5.19 -0.03 6.35 16 5 C -0.52 -14.60 8.92 -34.44 -0.31 -14.91 16 6 H 0.06 1.63 7.42 -52.48 -0.39 1.24 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.52 10.67 6.51 -10.98 -0.07 10.60 16 14 O -0.52 -12.96 13.06 5.56 0.07 -12.89 16 15 C 0.02 0.36 2.06 -68.54 -0.14 0.21 16 16 H 0.10 1.56 6.85 -51.93 -0.36 1.20 16 17 C 0.02 0.31 3.99 -3.50 -0.01 0.29 16 18 N -0.51 -6.47 5.24 -225.24 -1.18 -7.65 16 19 C 0.01 0.06 5.75 -3.49 -0.02 0.04 16 20 C 0.01 0.13 6.14 -3.49 -0.02 0.11 16 21 N -0.49 -7.73 5.10 -226.63 -1.16 -8.89 16 22 C -0.01 -0.10 5.37 -3.49 -0.02 -0.11 16 23 C 0.03 0.46 3.05 -67.38 -0.21 0.25 16 24 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 25 C -0.14 -1.45 8.63 37.16 0.32 -1.13 16 26 H 0.08 1.41 7.26 -51.93 -0.38 1.03 16 27 H 0.05 0.73 7.12 -51.93 -0.37 0.36 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.83 4.50 -51.93 -0.23 0.59 16 30 H 0.08 1.16 7.89 -51.93 -0.41 0.75 16 31 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 32 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 34 H 0.09 1.27 7.26 -51.93 -0.38 0.89 16 35 H 0.09 0.97 7.54 -51.93 -0.39 0.58 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.79 6.17 -51.93 -0.32 0.47 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.05 7.61 -51.93 -0.40 0.65 16 41 H 0.13 2.47 4.98 -51.93 -0.26 2.21 16 42 H 0.05 0.53 6.31 -51.93 -0.33 0.21 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -31.95 328.49 -9.37 -41.32 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.10 Total: 1.99 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -0.25 Total: 2.75 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -2.03 Total: -55.04 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.07 Total: -12.89 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.95 -9.37 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350944082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.049 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds