Wall clock time and date at job start Tue Mar 31 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47573 * 2 1 4 4 C 1.46501 * 119.99847 * 267.81361 * 3 2 1 5 5 C 1.50706 * 109.47005 * 269.99486 * 4 3 2 6 6 H 1.08001 * 119.99868 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99996 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99877 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99928 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47058 * 90.00005 * 9 7 5 11 11 H 1.48501 * 109.46922 * 209.99459 * 9 7 5 12 12 H 1.48491 * 109.47162 * 329.99637 * 9 7 5 13 13 C 1.34774 * 120.00496 * 87.80655 * 3 2 1 14 14 O 1.21280 * 120.00513 * 184.66991 * 13 3 2 15 15 C 1.50704 * 119.99752 * 4.67171 * 13 3 2 16 16 H 1.09008 * 109.58107 * 304.18223 * 15 13 3 17 17 C 1.53235 * 109.58107 * 64.44671 * 15 13 3 18 18 N 1.47272 * 108.80100 * 119.94073 * 17 15 13 19 19 C 1.47311 * 110.15669 * 60.80854 * 18 17 15 20 20 C 1.53206 * 108.80593 * 299.18404 * 19 18 17 21 21 N 1.47269 * 109.69482 * 183.83418 * 15 13 3 22 22 C 1.47309 * 110.15775 * 300.94186 * 21 15 13 23 23 C 1.47314 * 110.15733 * 299.18526 * 18 17 15 24 24 H 1.08999 * 109.57933 * 301.01354 * 23 18 17 25 25 C 1.53002 * 109.58202 * 180.60422 * 23 18 17 26 26 H 1.08997 * 109.47008 * 300.00365 * 1 2 3 27 27 H 1.09005 * 109.46838 * 59.99956 * 1 2 3 28 28 H 1.08993 * 109.47521 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47467 * 239.99819 * 2 1 3 30 30 H 1.09005 * 109.47359 * 119.99973 * 2 1 3 31 31 H 1.09003 * 109.47454 * 29.99222 * 4 3 2 32 32 H 1.09000 * 109.47243 * 149.99645 * 4 3 2 33 33 H 0.97003 * 119.99807 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.58573 * 239.74078 * 17 15 13 35 35 H 1.09001 * 109.58080 * 0.02562 * 17 15 13 36 36 H 1.08997 * 109.58389 * 58.98265 * 19 18 17 37 37 H 1.09001 * 109.58177 * 179.39179 * 19 18 17 38 38 H 1.08995 * 109.57951 * 119.79918 * 20 19 18 39 39 H 1.08996 * 109.58129 * 240.21258 * 20 19 18 40 40 H 1.09002 * 109.58438 * 58.98704 * 22 21 15 41 41 H 1.09005 * 109.57967 * 179.25644 * 22 21 15 42 42 H 1.09001 * 109.47012 * 60.00339 * 25 23 18 43 43 H 1.08998 * 109.46806 * 179.97438 * 25 23 18 44 44 H 1.08999 * 109.47091 * 300.00024 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3082 2.0556 -1.2678 5 6 3.7463 1.8135 -1.6483 6 1 4.3806 1.2167 -1.0097 7 6 4.2517 2.3532 -2.8120 8 7 5.5068 2.1424 -3.1438 9 14 3.1542 3.3850 -3.9168 10 1 3.2429 4.8105 -3.5104 11 1 3.5983 3.2437 -5.3268 12 1 1.7493 2.9209 -3.7914 13 6 2.2010 2.0315 1.1663 14 8 2.5237 3.2005 1.1647 15 6 2.0042 1.3059 2.4724 16 1 1.0037 0.8742 2.5033 17 6 3.0483 0.1920 2.6035 18 7 3.8616 0.4428 3.8053 19 6 3.0081 0.4374 5.0060 20 6 1.9642 1.5512 4.8750 21 7 2.1707 2.2469 3.5929 22 6 3.5146 2.8488 3.5548 23 6 4.5585 1.7352 3.6861 24 1 5.1961 1.7261 2.8021 25 6 5.4105 1.9754 4.9340 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6552 1.6616 -2.0466 32 1 2.1370 3.1263 -1.1573 33 1 5.8625 2.5224 -3.9623 34 1 2.5457 -0.7708 2.6967 35 1 3.6887 0.1860 1.7215 36 1 2.5055 -0.5259 5.0927 37 1 3.6206 0.6130 5.8904 38 1 0.9639 1.1189 4.8992 39 1 2.0790 2.2579 5.6968 40 1 3.6545 3.3709 2.6082 41 1 3.6230 3.5529 4.3799 42 1 6.1446 1.1756 5.0322 43 1 5.9256 2.9317 4.8435 44 1 4.7688 1.9898 5.8149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350944084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:58 Heat of formation + Delta-G solvation = 10.193133 kcal Electronic energy + Delta-G solvation = -24323.052648 eV Core-core repulsion = 21083.546108 eV Total energy + Delta-G solvation = -3239.506540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47013 -38.66245 -35.54289 -33.54440 -32.80843 -32.21719 -31.28422 -30.33038 -28.10544 -26.83964 -24.04735 -23.95370 -22.86980 -22.56596 -21.58433 -18.79483 -17.93653 -17.18284 -16.91496 -16.79658 -16.03369 -15.30954 -15.00296 -14.57289 -14.04610 -13.64133 -13.57364 -13.28002 -13.07039 -13.03272 -12.73358 -12.64615 -12.36836 -12.27953 -12.12427 -12.02227 -11.74571 -11.48519 -11.18263 -11.05791 -10.84922 -10.77813 -10.50687 -10.45107 -10.35439 -10.16462 -9.72654 -9.55678 -8.82144 -8.60541 -7.75588 -7.55741 -6.10768 -4.09809 3.25961 3.28068 3.34046 3.36431 3.53223 3.82501 4.26501 4.38191 4.65031 4.74842 4.84354 4.91056 5.09773 5.17860 5.23541 5.28693 5.32698 5.42180 5.45226 5.52477 5.56198 5.62422 5.69528 5.76592 5.80087 5.86557 5.88052 5.98140 6.09548 6.12874 6.18451 6.36438 6.39664 6.60525 6.74433 6.82344 6.94502 7.18362 7.24048 7.35107 7.58978 8.22950 8.44685 8.90014 8.96819 9.49682 11.02364 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020989 B = 0.005943 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.719054 B = 4709.997070 C = 5299.253952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 N -0.590 5.590 4 C 0.217 3.783 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.521 3.479 14 O -0.525 6.525 15 C 0.024 3.976 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.509 5.509 19 C 0.005 3.995 20 C 0.011 3.989 21 N -0.494 5.494 22 C -0.003 4.003 23 C 0.034 3.966 24 H 0.091 0.909 25 C -0.138 4.138 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 -5.589 14.821 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 N -0.322 5.322 4 C 0.096 3.904 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.307 3.693 14 O -0.402 6.402 15 C -0.090 4.090 16 H 0.121 0.879 17 C -0.109 4.109 18 N -0.230 5.230 19 C -0.125 4.125 20 C -0.119 4.119 21 N -0.215 5.215 22 C -0.132 4.132 23 C -0.076 4.076 24 H 0.109 0.891 25 C -0.195 4.195 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.143 0.857 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.450 -4.914 14.646 17.151 hybrid contribution -0.506 0.382 -0.689 0.937 sum -7.956 -4.533 13.957 16.692 Atomic orbital electron populations 1.22235 0.96735 1.01594 1.02269 1.21596 0.93479 0.83984 1.03408 1.47868 1.64056 1.13343 1.06911 1.19659 0.97035 0.93719 0.79963 1.21311 0.94478 1.33563 1.07415 0.90809 1.24845 0.94912 0.95722 0.97440 1.69898 1.13616 1.45153 1.24811 0.86858 0.81273 0.81559 0.80055 1.19916 1.21084 1.19080 1.19933 0.77817 0.87053 0.84504 1.90525 1.46938 1.16309 1.86430 1.22420 1.01204 0.93734 0.91676 0.87877 1.22969 0.95547 0.97550 0.94808 1.63947 1.26055 1.30976 1.02065 1.22962 0.95480 0.99402 0.94621 1.22920 0.99538 0.96593 0.92824 1.63647 1.28654 1.28587 1.00623 1.23492 0.86303 0.96797 1.06638 1.22502 0.96151 0.88787 1.00170 0.89111 1.21864 0.99472 1.01794 0.96412 0.93016 0.92180 0.91914 0.89563 0.91117 0.95253 0.94507 0.92555 0.89572 0.88811 0.90441 0.89856 0.90489 0.90148 0.85703 0.90744 0.92075 0.91922 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.18 37.16 0.38 -1.75 16 2 C 0.10 1.51 5.64 -4.04 -0.02 1.49 16 3 N -0.59 -11.84 2.42 -175.05 -0.42 -12.27 16 4 C 0.22 5.23 4.25 -5.19 -0.02 5.21 16 5 C -0.53 -14.91 9.94 -34.44 -0.34 -15.25 16 6 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 9 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 13 C 0.52 10.52 6.47 -10.98 -0.07 10.45 16 14 O -0.53 -12.68 13.14 5.56 0.07 -12.60 16 15 C 0.02 0.37 2.04 -68.54 -0.14 0.23 16 16 H 0.10 1.42 6.93 -51.92 -0.36 1.06 16 17 C 0.02 0.31 4.01 -3.50 -0.01 0.30 16 18 N -0.51 -7.07 5.24 -225.25 -1.18 -8.25 16 19 C 0.01 0.06 5.75 -3.49 -0.02 0.04 16 20 C 0.01 0.13 6.14 -3.49 -0.02 0.11 16 21 N -0.49 -7.63 5.08 -226.62 -1.15 -8.78 16 22 C 0.00 -0.05 5.36 -3.50 -0.02 -0.07 16 23 C 0.03 0.50 3.05 -67.38 -0.21 0.30 16 24 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 25 C -0.14 -1.63 8.63 37.16 0.32 -1.30 16 26 H 0.05 0.63 7.21 -51.93 -0.37 0.25 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 30 H 0.07 0.93 4.57 -51.93 -0.24 0.69 16 31 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 32 H 0.04 0.96 6.79 -51.93 -0.35 0.61 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.09 1.03 7.52 -51.93 -0.39 0.64 16 35 H 0.09 1.62 7.26 -51.93 -0.38 1.25 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.84 6.17 -51.93 -0.32 0.52 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.13 2.53 5.08 -51.93 -0.26 2.27 16 41 H 0.07 1.09 7.62 -51.93 -0.40 0.69 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.57 6.31 -51.93 -0.33 0.24 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -32.54 327.16 -9.09 -41.63 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.16 Total: 3.34 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -0.28 Total: 1.76 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -1.98 Total: -55.89 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.07 Total: -12.60 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.54 -9.09 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350944084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.819 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds