Wall clock time and date at job start Tue Mar 31 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99796 * 2 1 4 4 H 1.48503 * 109.46852 * 269.99667 * 3 2 1 5 5 H 1.48505 * 109.47422 * 29.99768 * 3 2 1 6 6 H 1.48503 * 109.46992 * 149.99871 * 3 2 1 7 7 C 1.37867 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00441 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99778 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.47231 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46843 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.46855 * 179.97438 * 11 10 9 13 13 C 1.34765 * 120.00158 * 179.97438 * 12 11 10 14 14 O 1.21593 * 120.00035 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00279 * 180.02562 * 13 12 11 16 16 C 1.46498 * 120.00290 * 179.97438 * 15 13 12 17 17 C 1.53951 * 113.58334 * 205.00098 * 16 15 13 18 18 C 1.52906 * 86.78378 * 220.66638 * 17 16 15 19 19 C 1.52916 * 121.13572 * 150.61803 * 18 17 16 20 20 C 1.53954 * 86.77930 * 100.81830 * 19 18 17 21 21 N 1.46905 * 113.57866 * 139.33702 * 20 19 18 22 22 C 1.52911 * 121.13647 * 259.17786 * 18 17 16 23 23 C 1.52913 * 88.04253 * 24.89851 * 18 17 16 24 24 H 0.96994 * 119.99418 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47323 * 60.00193 * 9 7 2 26 26 H 1.09003 * 109.47636 * 299.99966 * 9 7 2 27 27 H 1.08997 * 109.47055 * 59.99729 * 10 9 7 28 28 H 1.08995 * 109.46789 * 300.00130 * 10 9 7 29 29 H 1.08999 * 109.47035 * 60.00221 * 11 10 9 30 30 H 1.08995 * 109.47538 * 299.99676 * 11 10 9 31 31 H 0.97000 * 119.99775 * 0.02562 * 12 11 10 32 32 H 0.97000 * 119.99654 * 0.02562 * 15 13 12 33 33 H 1.09001 * 112.87993 * 336.14380 * 16 15 13 34 34 H 1.08999 * 113.65984 * 106.19177 * 17 16 15 35 35 H 1.09001 * 113.74618 * 335.14890 * 17 16 15 36 36 H 1.09002 * 113.66279 * 346.34830 * 19 18 17 37 37 H 1.09000 * 113.74636 * 215.29873 * 19 18 17 38 38 H 1.08998 * 113.58221 * 270.04857 * 20 19 18 39 39 H 1.00901 * 110.99869 * 180.02562 * 21 20 19 40 40 H 1.00896 * 110.99543 * 303.95275 * 21 20 19 41 41 H 1.08999 * 113.66458 * 144.70962 * 22 18 17 42 42 H 1.09005 * 113.66070 * 13.65502 * 22 18 17 43 43 H 1.09000 * 113.66112 * 89.57527 * 23 18 17 44 44 H 1.08995 * 113.65708 * 220.62758 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 6 5.5516 -2.6364 0.0009 12 7 6.0400 -4.0177 0.0014 13 6 7.3650 -4.2640 0.0010 14 8 8.1551 -3.3398 0.0006 15 7 7.8143 -5.5346 0.0009 16 6 9.2546 -5.8023 -0.0002 17 6 9.6260 -7.1722 -0.5965 18 6 10.6495 -7.2901 0.5334 19 6 11.0551 -8.6539 1.0937 20 6 12.3241 -8.5342 0.2303 21 7 13.5417 -9.0002 0.9075 22 6 12.1324 -7.0078 0.2896 23 6 9.7845 -6.3266 1.3468 24 1 -0.4849 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8753 -0.6804 -0.8888 27 1 3.6586 -3.1502 -0.8892 28 1 3.6579 -3.1505 0.8907 29 1 5.9149 -2.1227 0.8910 30 1 5.9150 -2.1226 -0.8890 31 1 5.4097 -4.7550 0.0014 32 1 7.1839 -6.2719 0.0008 33 1 9.8388 -4.9769 -0.4070 34 1 10.0742 -7.1106 -1.5881 35 1 8.8240 -7.9081 -0.5387 36 1 10.3943 -9.4658 0.7899 37 1 11.2530 -8.6468 2.1656 38 1 12.2114 -8.9505 -0.7707 39 1 14.3479 -8.9042 0.3084 40 1 13.6795 -8.5122 1.7797 41 1 12.6329 -6.5365 1.1355 42 1 12.3322 -6.5047 -0.6565 43 1 9.0261 -6.8238 1.9516 44 1 10.3594 -5.5897 1.9075 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353330993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:04 Heat of formation + Delta-G solvation = -5.396154 kcal Electronic energy + Delta-G solvation = -21205.641892 eV Core-core repulsion = 17965.459350 eV Total energy + Delta-G solvation = -3240.182542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13520 -39.59100 -36.65606 -35.37057 -33.54014 -33.02634 -31.42237 -30.53698 -27.09510 -26.23961 -26.21769 -23.72404 -22.50794 -21.05846 -20.76637 -20.30506 -18.62106 -17.92925 -16.90352 -16.64436 -16.46296 -15.64032 -15.57077 -15.08488 -14.94310 -14.21155 -14.16832 -14.03550 -13.66160 -13.20286 -12.86760 -12.78117 -12.69168 -12.51298 -12.07321 -11.99359 -11.88791 -11.56840 -11.05909 -10.91266 -10.86536 -10.57099 -10.39073 -10.25675 -9.99593 -9.81242 -9.66753 -9.22327 -9.19921 -9.08338 -8.66419 -8.55035 -6.06049 -4.04691 2.78851 3.29013 3.31810 3.39288 3.43992 3.89233 4.00775 4.07386 4.17028 4.33397 4.44904 4.46250 4.49567 4.61628 4.96079 5.10029 5.25455 5.28152 5.28626 5.37153 5.38317 5.51967 5.53653 5.58569 5.65947 5.70420 5.84479 5.91099 6.00411 6.05269 6.39529 6.47885 6.47974 6.65213 6.71049 6.83355 6.96582 7.02940 7.24230 7.37508 7.76235 8.11189 8.50539 8.71022 8.97759 9.56306 11.07163 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.061761 B = 0.002181 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.248723 B =12837.297890 C =13084.444542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.133 3.867 12 N -0.742 5.742 13 C 0.700 3.300 14 O -0.595 6.595 15 N -0.740 5.740 16 C 0.148 3.852 17 C -0.121 4.121 18 C -0.103 4.103 19 C -0.115 4.115 20 C 0.073 3.927 21 N -0.841 5.841 22 C -0.154 4.154 23 C -0.138 4.138 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.395 0.605 32 H 0.395 0.605 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.341 0.659 40 H 0.342 0.658 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.566 -19.054 0.591 31.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.009 3.991 12 N -0.396 5.396 13 C 0.400 3.600 14 O -0.474 6.474 15 N -0.395 5.395 16 C 0.042 3.958 17 C -0.160 4.160 18 C -0.104 4.104 19 C -0.153 4.153 20 C -0.039 4.039 21 N -0.369 5.369 22 C -0.194 4.194 23 C -0.177 4.177 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.229 0.771 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 24.774 -18.759 0.610 31.081 hybrid contribution -0.031 1.247 -0.098 1.251 sum 24.743 -17.512 0.512 30.317 Atomic orbital electron populations 1.69918 1.06305 1.26937 1.51058 1.25031 0.94760 0.99249 0.94480 0.86773 0.80416 0.83504 0.78595 1.20244 1.21376 1.18871 1.21097 0.89327 0.94500 1.51039 0.91023 1.19507 0.97231 0.91495 0.96697 1.21706 0.90720 1.00985 1.01678 1.21508 0.95660 0.80117 1.01783 1.45348 1.04842 1.10077 1.79346 1.16070 0.82976 0.83251 0.77697 1.90906 1.55113 1.43259 1.58095 1.45137 1.07499 1.06242 1.80605 1.22274 0.80496 0.96797 0.96276 1.23104 0.98003 0.96972 0.97882 1.22059 0.93821 0.96639 0.97905 1.22884 0.96421 0.96039 0.99959 1.22891 0.90481 0.92366 0.98194 1.58687 1.05458 1.64058 1.08724 1.23581 0.94996 0.98493 1.02303 1.23334 0.98941 0.98166 0.97293 0.92716 0.96273 0.96715 0.92168 0.92138 0.92012 0.92009 0.77173 0.77111 0.86890 0.90628 0.89180 0.91028 0.89707 0.88067 0.84638 0.84526 0.89776 0.91141 0.89536 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.74 9.66 -34.44 -0.33 -15.08 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 11 C 0.13 2.25 5.67 -4.04 -0.02 2.22 16 12 N -0.74 -10.35 5.56 -65.23 -0.36 -10.71 16 13 C 0.70 10.37 8.57 -86.93 -0.74 9.62 16 14 O -0.60 -11.40 15.94 5.28 0.08 -11.31 16 15 N -0.74 -7.66 5.36 -57.72 -0.31 -7.97 16 16 C 0.15 1.39 4.24 -66.95 -0.28 1.10 16 17 C -0.12 -0.80 7.59 -26.28 -0.20 -1.00 16 18 C -0.10 -0.67 1.11 -154.71 -0.17 -0.84 16 19 C -0.11 -0.70 7.63 -26.28 -0.20 -0.90 16 20 C 0.07 0.41 5.01 -66.73 -0.33 0.08 16 21 N -0.84 -4.52 9.63 -3.83 -0.04 -4.56 16 22 C -0.15 -0.92 7.55 -26.28 -0.20 -1.12 16 23 C -0.14 -1.13 7.64 -26.28 -0.20 -1.33 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 26 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.39 4.35 8.49 -40.82 -0.35 4.00 16 32 H 0.40 2.94 8.74 -40.82 -0.36 2.59 16 33 H 0.11 1.32 7.47 -51.93 -0.39 0.93 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.34 1.39 9.08 -39.29 -0.36 1.03 16 40 H 0.34 1.57 8.84 -39.29 -0.35 1.22 16 41 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -33.74 357.52 -9.81 -43.55 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.64 Total: 3.52 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -3.04 Total: -8.05 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.06 Total: -50.27 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.74 -9.81 -43.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353330993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.154 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds