Wall clock time and date at job start Tue Mar 31 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46958 * 111.00178 * 2 1 4 4 C 1.53049 * 109.36498 * 176.80700 * 3 2 1 5 5 N 1.46961 * 109.36410 * 58.40707 * 4 3 2 6 6 C 1.46899 * 111.00013 * 176.81046 * 5 4 3 7 7 C 1.53036 * 109.46049 * 63.86315 * 6 5 4 8 8 C 1.53195 * 109.31118 * 178.61074 * 7 6 5 9 9 N 1.46927 * 108.77194 * 54.64102 * 8 7 6 10 10 C 1.34773 * 120.63495 * 126.37039 * 9 8 7 11 11 O 1.21689 * 120.00688 * 174.75548 * 10 9 8 12 12 C 1.46383 * 119.99841 * 354.75308 * 10 9 8 13 13 H 1.07997 * 119.99694 * 5.67770 * 12 10 9 14 14 C 1.40044 * 120.00260 * 185.67745 * 12 10 9 15 15 N 1.30676 * 119.99636 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00242 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46740 * 60.00441 * 16 14 12 18 18 H 1.48499 * 109.47246 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47189 * 300.00189 * 16 14 12 20 20 C 1.46930 * 118.73697 * 306.38356 * 9 8 7 21 21 C 1.53036 * 109.45884 * 303.79433 * 6 5 4 22 22 C 1.46958 * 110.87559 * 300.67676 * 5 4 3 23 23 C 1.46959 * 111.00362 * 236.19757 * 2 1 3 24 24 H 1.09008 * 109.47133 * 183.79799 * 1 2 3 25 25 H 1.09002 * 109.46795 * 63.80183 * 1 2 3 26 26 H 1.08993 * 109.47271 * 303.80010 * 1 2 3 27 27 H 1.08997 * 109.48674 * 296.78118 * 3 2 1 28 28 H 1.09004 * 109.48458 * 56.84441 * 3 2 1 29 29 H 1.08996 * 109.49310 * 298.43798 * 4 3 2 30 30 H 1.08998 * 109.49006 * 178.36734 * 4 3 2 31 31 H 1.08996 * 109.45842 * 183.82228 * 6 5 4 32 32 H 1.09001 * 109.50275 * 298.56788 * 7 6 5 33 33 H 1.09006 * 109.49911 * 58.66610 * 7 6 5 34 34 H 1.08998 * 109.58729 * 294.84868 * 8 7 6 35 35 H 1.09003 * 109.58465 * 174.42362 * 8 7 6 36 36 H 0.97001 * 119.99832 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.58843 * 293.82691 * 20 9 8 38 38 H 1.08997 * 109.58477 * 173.39723 * 20 9 8 39 39 H 1.08998 * 109.49921 * 301.33859 * 21 6 5 40 40 H 1.09002 * 109.49908 * 61.43806 * 21 6 5 41 41 H 1.09001 * 109.49154 * 299.34954 * 22 5 4 42 42 H 1.09002 * 109.49003 * 179.29162 * 22 5 4 43 43 H 1.08998 * 109.49158 * 303.15727 * 23 2 1 44 44 H 1.09002 * 109.48377 * 63.20000 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3290 0.0804 5 7 4.0501 0.5659 -1.0597 6 6 5.5191 0.5659 -1.0596 7 6 6.0289 -0.1571 0.1892 8 6 7.5604 -0.1855 0.1684 9 7 8.0569 1.1896 0.0224 10 6 8.9505 1.6936 0.8964 11 8 9.4261 2.7983 0.7115 12 6 9.3488 0.9121 2.0683 13 1 8.9984 -0.1027 2.1851 14 6 10.1842 1.4804 3.0380 15 7 10.6077 2.7086 2.8969 16 14 10.6920 0.4834 4.5339 17 1 11.4267 -0.7298 4.0939 18 1 11.5707 1.3069 5.4027 19 1 9.4818 0.0807 5.2944 20 6 7.5605 2.0051 -1.0946 21 6 6.0289 2.0088 -1.0596 22 6 3.5234 -0.8061 -1.0597 23 6 1.9957 -0.7633 -1.1400 24 1 -0.3634 -1.0255 0.0681 25 1 -0.3633 0.4537 -0.9221 26 1 -0.3633 0.5716 0.8539 27 1 1.6937 1.8773 -0.9173 28 1 1.6013 1.9128 0.8603 29 1 3.8253 0.8479 1.0107 30 1 3.9178 2.3448 0.0513 31 1 5.8823 0.0524 -1.9499 32 1 5.6868 0.3700 1.0799 33 1 5.6463 -1.1777 0.2004 34 1 7.9033 -0.7890 -0.6720 35 1 7.9307 -0.6105 1.1013 36 1 11.1861 3.1024 3.5688 37 1 7.9034 1.5801 -2.0379 38 1 7.9308 3.0254 -0.9949 39 1 5.6463 2.5299 -1.9372 40 1 5.6869 2.5156 -0.1572 41 1 3.8253 -1.3115 -0.1424 42 1 3.9178 -1.3470 -1.9199 43 1 1.6014 -1.7790 -1.1110 44 1 1.6935 -0.2823 -2.0703 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001454875771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:16 Heat of formation + Delta-G solvation = -16.544591 kcal Electronic energy + Delta-G solvation = -23255.798473 eV Core-core repulsion = 20015.132498 eV Total energy + Delta-G solvation = -3240.665975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92572 -38.15927 -36.35910 -34.26669 -32.51740 -31.34724 -30.76667 -30.28743 -27.75282 -26.28229 -24.29710 -23.87928 -22.70786 -22.47769 -20.68457 -19.43692 -18.47915 -16.73843 -16.28838 -15.59793 -15.28835 -15.01798 -14.88823 -14.68722 -14.30851 -14.19208 -13.89939 -13.76165 -13.18748 -13.15509 -12.61278 -12.36925 -12.29656 -11.91090 -11.66932 -11.49172 -11.35225 -11.27620 -11.15180 -11.04922 -10.90595 -10.74112 -10.52255 -10.45732 -10.23420 -9.94950 -9.84415 -8.84736 -8.54464 -8.11887 -7.56656 -7.20294 -6.19330 -4.64112 3.15200 3.20316 3.21801 3.77077 3.94655 4.08941 4.56523 4.59201 4.78912 4.86648 4.96231 5.15942 5.17922 5.23227 5.31135 5.39203 5.41232 5.46820 5.52313 5.62804 5.66319 5.71515 5.76586 5.83738 5.87364 5.88377 5.97532 6.11071 6.15425 6.25059 6.37783 6.51366 6.54003 6.59768 6.76433 6.82514 6.86051 7.18494 7.21025 7.45972 7.64952 8.14854 8.36697 9.02518 9.45002 10.58349 10.76970 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.004122 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.065543 B = 6790.796910 C = 7231.504882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.058 3.942 4 C 0.050 3.950 5 N -0.535 5.535 6 C 0.090 3.910 7 C -0.165 4.165 8 C 0.127 3.873 9 N -0.642 5.642 10 C 0.560 3.440 11 O -0.579 6.579 12 C -0.545 4.545 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.905 3.095 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.268 1.268 20 C 0.122 3.878 21 C -0.124 4.124 22 C 0.053 3.947 23 C 0.059 3.941 24 H 0.066 0.934 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.269 0.731 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.035 -7.092 -6.301 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.070 4.070 4 C -0.078 4.078 5 N -0.258 5.258 6 C -0.018 4.018 7 C -0.205 4.205 8 C 0.002 3.998 9 N -0.381 5.381 10 C 0.366 3.634 11 O -0.461 6.461 12 C -0.582 4.582 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.397 5.397 16 Si 0.730 3.270 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.193 1.193 20 C -0.003 4.003 21 C -0.162 4.162 22 C -0.075 4.075 23 C -0.070 4.070 24 H 0.085 0.915 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -16.655 -6.299 -6.333 18.899 hybrid contribution 0.065 -0.639 0.742 0.981 sum -16.590 -6.937 -5.591 18.831 Atomic orbital electron populations 1.22333 0.87452 1.02038 1.00404 1.62146 1.07570 1.14347 1.43027 1.22193 0.95162 0.88913 1.00737 1.22236 0.93328 0.99412 0.92873 1.62482 1.07883 1.13123 1.42342 1.21689 0.85376 0.97131 0.97592 1.22606 0.98398 1.00165 0.99335 1.21330 0.91324 0.85283 1.01900 1.48185 1.47440 1.12673 1.29761 1.18223 0.77293 0.86096 0.81780 1.90587 1.56965 1.22383 1.76200 1.20946 1.31762 1.00326 1.05167 0.91026 1.25719 0.94270 0.94577 0.98582 1.70006 1.25045 1.12623 1.32070 0.86472 0.79040 0.80250 0.81249 1.19231 1.20534 1.19288 1.21106 0.91388 0.97996 0.89774 1.22025 0.96975 0.95235 1.02008 1.22153 0.93692 0.90398 1.01294 1.22160 0.95007 0.98090 0.91702 0.91496 0.95769 0.91442 0.94204 0.90514 0.93421 0.89728 0.90284 0.91423 0.91945 0.94171 0.88943 0.92053 0.94099 0.89718 0.91387 0.91729 0.93412 0.90505 0.90620 0.94235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.60 60.06 0.58 0.80 16 2 N -0.55 -5.98 4.97 -242.76 -1.21 -7.18 16 3 C 0.06 0.65 5.62 -3.77 -0.02 0.63 16 4 C 0.05 0.65 4.83 -3.77 -0.02 0.63 16 5 N -0.53 -6.94 4.74 -226.45 -1.07 -8.02 16 6 C 0.09 1.30 2.27 -67.68 -0.15 1.14 16 7 C -0.17 -2.57 4.66 -26.61 -0.12 -2.70 16 8 C 0.13 2.36 6.35 -3.71 -0.02 2.34 16 9 N -0.64 -14.59 2.97 -174.42 -0.52 -15.11 16 10 C 0.56 15.99 7.61 -12.98 -0.10 15.89 16 11 O -0.58 -18.80 14.48 5.20 0.08 -18.72 16 12 C -0.55 -15.29 8.88 -35.63 -0.32 -15.61 16 13 H 0.07 1.83 5.64 -52.49 -0.30 1.53 16 14 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 15 N -0.77 -23.07 11.84 55.55 0.66 -22.41 16 16 Si 0.91 20.09 29.56 -169.99 -5.02 15.06 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 C 0.12 2.39 6.42 -3.71 -0.02 2.37 16 21 C -0.12 -1.98 4.96 -26.61 -0.13 -2.11 16 22 C 0.05 0.60 5.13 -3.77 -0.02 0.59 16 23 C 0.06 0.60 5.62 -3.77 -0.02 0.58 16 24 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 25 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 26 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.05 0.69 6.60 -51.93 -0.34 0.35 16 30 H 0.08 1.14 6.09 -51.93 -0.32 0.82 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.18 6.64 -51.93 -0.34 0.83 16 33 H 0.06 0.86 6.41 -51.93 -0.33 0.53 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.83 5.30 -51.93 -0.28 1.56 16 36 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.88 7.04 -51.93 -0.37 1.51 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.12 6.36 -51.93 -0.33 0.79 16 41 H 0.05 0.59 6.45 -51.93 -0.34 0.26 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -33.20 329.83 -9.73 -42.94 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.14 Total: 1.56 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -0.47 Total: 6.91 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -2.14 Total: -52.72 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.08 Total: -18.72 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.20 -9.73 -42.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454875771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.392 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds