Wall clock time and date at job start Tue Mar 31 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46958 * 111.00178 * 2 1 4 4 C 1.53049 * 109.36498 * 176.80700 * 3 2 1 5 5 N 1.46961 * 109.36410 * 58.40707 * 4 3 2 6 6 C 1.46899 * 111.00013 * 176.81046 * 5 4 3 7 7 C 1.53036 * 109.46049 * 63.86315 * 6 5 4 8 8 C 1.53195 * 109.31118 * 178.61074 * 7 6 5 9 9 N 1.46927 * 108.77194 * 54.64102 * 8 7 6 10 10 C 1.34773 * 120.63495 * 126.37039 * 9 8 7 11 11 O 1.21689 * 120.00688 * 174.75548 * 10 9 8 12 12 C 1.46383 * 119.99841 * 354.75308 * 10 9 8 13 13 H 1.07997 * 119.99694 * 5.67770 * 12 10 9 14 14 C 1.40044 * 120.00260 * 185.67745 * 12 10 9 15 15 N 1.30676 * 119.99636 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00242 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46740 * 60.00441 * 16 14 12 18 18 H 1.48499 * 109.47246 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47189 * 300.00189 * 16 14 12 20 20 C 1.46930 * 118.73697 * 306.38356 * 9 8 7 21 21 C 1.53036 * 109.45884 * 303.79433 * 6 5 4 22 22 C 1.46958 * 110.87559 * 300.67676 * 5 4 3 23 23 C 1.46959 * 111.00362 * 236.19757 * 2 1 3 24 24 H 1.09008 * 109.47133 * 183.79799 * 1 2 3 25 25 H 1.09002 * 109.46795 * 63.80183 * 1 2 3 26 26 H 1.08993 * 109.47271 * 303.80010 * 1 2 3 27 27 H 1.08997 * 109.48674 * 296.78118 * 3 2 1 28 28 H 1.09004 * 109.48458 * 56.84441 * 3 2 1 29 29 H 1.08996 * 109.49310 * 298.43798 * 4 3 2 30 30 H 1.08998 * 109.49006 * 178.36734 * 4 3 2 31 31 H 1.08996 * 109.45842 * 183.82228 * 6 5 4 32 32 H 1.09001 * 109.50275 * 298.56788 * 7 6 5 33 33 H 1.09006 * 109.49911 * 58.66610 * 7 6 5 34 34 H 1.08998 * 109.58729 * 294.84868 * 8 7 6 35 35 H 1.09003 * 109.58465 * 174.42362 * 8 7 6 36 36 H 0.97001 * 119.99832 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.58843 * 293.82691 * 20 9 8 38 38 H 1.08997 * 109.58477 * 173.39723 * 20 9 8 39 39 H 1.08998 * 109.49921 * 301.33859 * 21 6 5 40 40 H 1.09002 * 109.49908 * 61.43806 * 21 6 5 41 41 H 1.09001 * 109.49154 * 299.34954 * 22 5 4 42 42 H 1.09002 * 109.49003 * 179.29162 * 22 5 4 43 43 H 1.08998 * 109.49158 * 303.15727 * 23 2 1 44 44 H 1.09002 * 109.48377 * 63.20000 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3290 0.0804 5 7 4.0501 0.5659 -1.0597 6 6 5.5191 0.5659 -1.0596 7 6 6.0289 -0.1571 0.1892 8 6 7.5604 -0.1855 0.1684 9 7 8.0569 1.1896 0.0224 10 6 8.9505 1.6936 0.8964 11 8 9.4261 2.7983 0.7115 12 6 9.3488 0.9121 2.0683 13 1 8.9984 -0.1027 2.1851 14 6 10.1842 1.4804 3.0380 15 7 10.6077 2.7086 2.8969 16 14 10.6920 0.4834 4.5339 17 1 11.4267 -0.7298 4.0939 18 1 11.5707 1.3069 5.4027 19 1 9.4818 0.0807 5.2944 20 6 7.5605 2.0051 -1.0946 21 6 6.0289 2.0088 -1.0596 22 6 3.5234 -0.8061 -1.0597 23 6 1.9957 -0.7633 -1.1400 24 1 -0.3634 -1.0255 0.0681 25 1 -0.3633 0.4537 -0.9221 26 1 -0.3633 0.5716 0.8539 27 1 1.6937 1.8773 -0.9173 28 1 1.6013 1.9128 0.8603 29 1 3.8253 0.8479 1.0107 30 1 3.9178 2.3448 0.0513 31 1 5.8823 0.0524 -1.9499 32 1 5.6868 0.3700 1.0799 33 1 5.6463 -1.1777 0.2004 34 1 7.9033 -0.7890 -0.6720 35 1 7.9307 -0.6105 1.1013 36 1 11.1861 3.1024 3.5688 37 1 7.9034 1.5801 -2.0379 38 1 7.9308 3.0254 -0.9949 39 1 5.6463 2.5299 -1.9372 40 1 5.6869 2.5156 -0.1572 41 1 3.8253 -1.3115 -0.1424 42 1 3.9178 -1.3470 -1.9199 43 1 1.6014 -1.7790 -1.1110 44 1 1.6935 -0.2823 -2.0703 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001454875771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:16 Heat of formation + Delta-G solvation = -41.842537 kcal Electronic energy + Delta-G solvation = -23256.895474 eV Core-core repulsion = 20015.132498 eV Total energy + Delta-G solvation = -3241.762976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.10346 -39.68535 -37.87734 -35.75990 -34.65110 -32.64490 -31.91813 -31.65416 -28.96277 -28.14215 -25.42581 -24.93793 -24.05400 -23.80076 -22.07438 -20.86388 -19.84965 -18.48999 -17.89508 -17.16134 -16.36391 -16.20207 -15.98544 -15.91863 -15.72420 -15.51338 -15.38619 -14.99731 -14.67138 -14.49516 -14.13901 -13.50345 -13.38860 -13.34464 -13.20468 -12.81727 -12.73151 -12.58526 -12.52641 -12.50608 -12.34064 -12.15703 -12.03662 -11.73556 -11.61425 -11.52455 -11.18287 -10.92260 -9.79379 -9.37601 -9.18623 -9.05495 -8.29252 -6.83880 1.38592 1.42047 1.53419 2.23175 2.45768 2.84454 2.89889 3.00624 3.59316 3.76197 3.85737 3.99824 4.10499 4.17130 4.22293 4.27245 4.34083 4.41110 4.44471 4.51558 4.61197 4.65555 4.68848 4.74040 4.84400 4.88273 4.91944 4.94317 4.96517 5.01823 5.02285 5.08770 5.11936 5.18972 5.38724 5.40886 5.77789 5.97863 6.00420 6.14510 6.17958 6.20915 6.42366 6.87804 7.42961 8.47213 8.67379 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.004122 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.065543 B = 6790.796910 C = 7231.504882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.561 5.561 3 C 0.064 3.936 4 C 0.052 3.948 5 N -0.532 5.532 6 C 0.099 3.901 7 C -0.151 4.151 8 C 0.123 3.877 9 N -0.645 5.645 10 C 0.541 3.459 11 O -0.634 6.634 12 C -0.571 4.571 13 H 0.093 0.907 14 C 0.029 3.971 15 N -0.824 5.824 16 Si 0.994 3.006 17 H -0.253 1.253 18 H -0.275 1.275 19 H -0.254 1.254 20 C 0.120 3.880 21 C -0.110 4.110 22 C 0.051 3.949 23 C 0.061 3.939 24 H 0.078 0.922 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.274 0.726 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.040 0.960 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.812 -9.778 -6.495 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.286 5.286 3 C -0.064 4.064 4 C -0.077 4.077 5 N -0.255 5.255 6 C -0.010 4.010 7 C -0.191 4.191 8 C -0.001 4.001 9 N -0.381 5.381 10 C 0.347 3.653 11 O -0.522 6.522 12 C -0.607 4.607 13 H 0.110 0.890 14 C -0.186 4.186 15 N -0.453 5.453 16 Si 0.813 3.187 17 H -0.177 1.177 18 H -0.199 1.199 19 H -0.178 1.178 20 C -0.004 4.004 21 C -0.149 4.149 22 C -0.076 4.076 23 C -0.067 4.067 24 H 0.097 0.903 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.496 -9.033 -6.567 21.606 hybrid contribution 0.559 0.194 0.719 0.931 sum -17.937 -8.839 -5.848 20.834 Atomic orbital electron populations 1.22372 0.85924 1.02965 1.00825 1.62164 1.09058 1.13879 1.43531 1.22103 0.93686 0.89602 1.01040 1.22187 0.94776 0.98623 0.92096 1.62499 1.06594 1.14389 1.42012 1.21570 0.86515 0.95445 0.97430 1.22479 0.95892 1.01626 0.99136 1.21521 0.93357 0.83027 1.02172 1.48062 1.46240 1.14470 1.29345 1.18636 0.78003 0.85669 0.82976 1.90534 1.59294 1.24585 1.77743 1.21483 1.32296 1.01403 1.05516 0.88959 1.26984 0.93617 0.95664 1.02320 1.70189 1.26146 1.15164 1.33850 0.85132 0.79052 0.78423 0.76102 1.17670 1.19950 1.17840 1.21228 0.93827 0.95796 0.89540 1.21867 0.94031 0.96955 1.02045 1.22263 0.94664 0.89133 1.01587 1.22176 0.94080 0.99008 0.91417 0.90334 0.95325 0.91040 0.94190 0.89893 0.95250 0.90836 0.88693 0.93701 0.89291 0.91701 0.90381 0.91653 0.91894 0.93288 0.89295 0.93652 0.94201 0.88862 0.88808 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.60 127.69 1.23 1.62 16 2 N -0.56 -10.95 4.97 -921.95 -4.58 -15.53 16 3 C 0.06 1.34 5.62 86.31 0.49 1.83 16 4 C 0.05 1.30 4.83 86.31 0.42 1.71 16 5 N -0.53 -12.65 4.74 -870.34 -4.12 -16.77 16 6 C 0.10 2.64 2.27 44.94 0.10 2.74 16 7 C -0.15 -4.49 4.66 30.67 0.14 -4.34 16 8 C 0.12 4.45 6.35 86.36 0.55 5.00 16 9 N -0.64 -29.83 2.97 -823.96 -2.45 -32.28 16 10 C 0.54 32.13 7.61 86.36 0.66 32.78 16 11 O -0.63 -43.54 14.48 -4.31 -0.06 -43.61 16 12 C -0.57 -32.65 8.88 24.83 0.22 -32.43 16 13 H 0.09 4.71 5.64 -2.91 -0.02 4.70 16 14 C 0.03 1.64 5.50 85.30 0.47 2.11 16 15 N -0.82 -51.28 11.84 21.83 0.26 -51.02 16 16 Si 0.99 41.31 29.56 68.60 2.03 43.34 16 17 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 20 C 0.12 4.79 6.42 86.36 0.55 5.34 16 21 C -0.11 -3.48 4.96 30.67 0.15 -3.33 16 22 C 0.05 1.02 5.13 86.31 0.44 1.46 16 23 C 0.06 1.07 5.62 86.31 0.49 1.56 16 24 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.08 1.61 8.13 -2.38 -0.02 1.59 16 29 H 0.03 0.85 6.60 -2.39 -0.02 0.83 16 30 H 0.07 1.99 6.09 -2.39 -0.01 1.97 16 31 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.04 1.55 6.64 -2.39 -0.02 1.53 16 33 H 0.09 2.20 6.41 -2.38 -0.02 2.18 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 3.05 5.30 -2.39 -0.01 3.03 16 36 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 2.29 7.04 -2.39 -0.02 2.28 16 39 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.04 1.61 6.36 -2.39 -0.02 1.59 16 41 H 0.04 0.87 6.45 -2.39 -0.02 0.85 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -75.67 329.83 -2.04 -77.72 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.98 Total: 22.11 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 5.90 Total: 16.04 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -10.89 Total: -115.61 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.06 Total: -43.61 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -75.67 -2.04 -77.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454875771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.873 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds