Wall clock time and date at job start Tue Mar 31 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.28523 * 2 1 4 4 C 1.54259 * 110.32476 * 122.12525 * 2 1 3 5 5 C 1.54377 * 105.05873 * 118.89985 * 4 2 1 6 6 N 1.48558 * 104.59913 * 23.85031 * 5 4 2 7 7 C 1.46892 * 111.00296 * 200.96093 * 6 5 4 8 8 C 1.50702 * 109.47293 * 290.12670 * 7 6 5 9 9 O 1.21279 * 119.99750 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99928 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99652 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.46806 * 179.97438 * 11 10 8 13 13 C 1.30991 * 119.99774 * 127.15405 * 12 11 10 14 14 C 1.50703 * 120.00394 * 7.55756 * 13 12 11 15 15 N 1.46498 * 109.47460 * 127.00634 * 14 13 12 16 16 C 1.36930 * 120.00380 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00111 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00252 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99873 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99874 * 359.97438 * 18 16 15 21 21 H 1.48509 * 109.46688 * 90.00280 * 20 18 16 22 22 H 1.48500 * 109.46912 * 209.99866 * 20 18 16 23 23 H 1.48493 * 109.47160 * 330.00282 * 20 18 16 24 24 C 1.48562 * 104.21904 * 320.52114 * 6 5 4 25 25 H 1.09000 * 109.47253 * 299.32712 * 1 2 3 26 26 H 1.09000 * 109.46934 * 179.32553 * 1 2 3 27 27 H 1.09000 * 109.47654 * 59.32897 * 1 2 3 28 28 H 1.09006 * 110.31991 * 237.79184 * 4 2 1 29 29 H 1.08998 * 110.32370 * 0.02562 * 4 2 1 30 30 H 1.09001 * 110.41419 * 142.63417 * 5 4 2 31 31 H 1.09002 * 110.41093 * 265.07166 * 5 4 2 32 32 H 1.09004 * 109.47243 * 50.12626 * 7 6 5 33 33 H 1.09001 * 109.47278 * 170.12660 * 7 6 5 34 34 H 0.96998 * 120.00156 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46530 * 299.99047 * 11 10 8 36 36 H 1.09001 * 109.47325 * 59.99568 * 11 10 8 37 37 H 1.07994 * 119.99753 * 307.15435 * 12 11 10 38 38 H 1.08003 * 120.00091 * 187.55455 * 13 12 11 39 39 H 1.09003 * 109.47419 * 247.00416 * 14 13 12 40 40 H 1.08999 * 109.46870 * 7.00509 * 14 13 12 41 41 H 0.97003 * 119.99608 * 359.97438 * 15 14 13 42 42 H 0.97002 * 119.99696 * 179.97438 * 19 18 16 43 43 H 1.09006 * 110.41152 * 280.70087 * 24 6 5 44 44 H 1.08999 * 110.40841 * 158.26465 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0658 -0.7692 1.2251 5 6 2.8807 -1.9414 0.6376 6 7 3.2694 -1.4835 -0.7211 7 6 3.6069 -2.6231 -1.5843 8 6 4.9013 -3.2393 -1.1196 9 8 5.4853 -2.7745 -0.1637 10 7 5.4103 -4.3063 -1.7669 11 6 6.6683 -4.9056 -1.3147 12 6 7.0146 -6.0748 -2.2004 13 6 8.1937 -6.1403 -2.7673 14 6 9.2617 -5.1415 -2.4027 15 7 10.4816 -5.8520 -2.0113 16 6 11.5938 -5.1473 -1.6356 17 1 11.5720 -4.0674 -1.6282 18 6 12.7496 -5.8205 -1.2642 19 7 13.8188 -5.1430 -0.9036 20 14 12.7873 -7.6881 -1.2764 21 1 13.2349 -8.1654 -2.6096 22 1 13.7301 -8.1709 -0.2356 23 1 11.4271 -8.2125 -0.9939 24 6 2.0662 -0.7722 -1.2245 25 1 -0.3634 0.5033 0.8959 26 1 -0.3633 -1.0276 -0.0121 27 1 -0.3634 0.5242 -0.8839 28 1 2.7082 -0.1249 1.8253 29 1 1.2388 -1.1472 1.8261 30 1 3.7671 -2.1295 1.2435 31 1 2.2649 -2.8386 0.5747 32 1 2.8113 -3.3664 -1.5323 33 1 3.7167 -2.2798 -2.6130 34 1 4.9433 -4.6778 -2.5316 35 1 7.4639 -4.1623 -1.3660 36 1 6.5580 -5.2495 -0.2862 37 1 6.2907 -6.8585 -2.3676 38 1 8.4004 -6.9100 -3.4961 39 1 9.4721 -4.5045 -3.2618 40 1 8.9162 -4.5275 -1.5711 41 1 10.5012 -6.8219 -2.0177 42 1 14.6263 -5.6135 -0.6437 43 1 1.3229 -1.4863 -1.5789 44 1 2.3394 -0.0798 -2.0208 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497675217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:12 Heat of formation + Delta-G solvation = 5.931541 kcal Electronic energy + Delta-G solvation = -21312.278394 eV Core-core repulsion = 18072.587057 eV Total energy + Delta-G solvation = -3239.691337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13309 -38.75260 -36.65568 -34.59494 -33.71055 -32.83063 -30.88332 -30.03461 -28.33984 -26.57944 -25.36803 -24.42426 -22.05732 -21.70750 -20.65991 -20.18874 -18.93178 -17.52985 -16.87365 -16.46586 -16.29982 -15.74328 -15.45198 -14.76037 -14.52727 -14.36049 -13.83778 -13.68644 -13.57397 -13.30750 -13.06275 -12.74520 -12.72589 -12.55796 -12.46620 -12.11971 -11.90118 -11.65532 -11.23561 -11.21104 -11.01243 -10.85714 -10.79396 -10.52531 -10.11353 -9.88748 -9.58782 -9.23868 -9.05769 -8.76131 -8.62842 -7.21500 -5.75396 -3.11660 2.13079 2.64403 3.14742 3.38537 3.40963 3.46228 3.81361 4.25834 4.36783 4.59104 4.60165 4.69756 4.90045 4.92910 4.94001 5.02025 5.08335 5.16980 5.19251 5.25016 5.34873 5.45211 5.52967 5.54974 5.58008 5.64769 5.70550 5.80859 5.83383 5.93307 5.95501 6.08000 6.28064 6.45225 6.50317 6.54844 6.60215 6.76942 7.02790 7.49794 8.00387 8.25428 8.43136 9.21529 9.93373 10.12942 11.42776 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035890 B = 0.002455 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.964990 B =11400.563230 C =11779.881971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.081 0.919 4 C -0.121 4.121 5 C 0.032 3.968 6 N -0.492 5.492 7 C 0.026 3.974 8 C 0.509 3.491 9 O -0.518 6.518 10 N -0.727 5.727 11 C 0.140 3.860 12 C -0.193 4.193 13 C -0.119 4.119 14 C 0.166 3.834 15 N -0.751 5.751 16 C -0.246 4.246 17 H 0.091 0.909 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.035 3.965 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.397 0.603 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.037 0.963 40 H 0.044 0.956 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.045 0.955 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.628 4.718 -2.448 31.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.099 0.901 4 C -0.159 4.159 5 C -0.095 4.095 6 N -0.216 5.216 7 C -0.106 4.106 8 C 0.294 3.706 9 O -0.393 6.393 10 N -0.380 5.380 11 C 0.018 3.982 12 C -0.213 4.213 13 C -0.138 4.138 14 C 0.040 3.960 15 N -0.397 5.397 16 C -0.375 4.375 17 H 0.109 0.891 18 C -0.192 4.192 19 N -0.580 5.580 20 Si 0.716 3.284 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.093 4.093 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -29.540 5.608 -1.667 30.114 hybrid contribution -0.729 -2.297 -0.530 2.467 sum -30.269 3.311 -2.197 30.529 Atomic orbital electron populations 1.21867 0.94659 1.01714 1.01909 1.21874 0.95322 1.00075 0.94392 0.90064 1.22404 0.99183 0.97054 0.97276 1.23223 0.99588 0.95940 0.90780 1.65170 1.33018 1.21434 1.01980 1.22149 0.95423 0.93740 0.99243 1.20417 0.86687 0.79972 0.83503 1.90729 1.60763 1.60745 1.27015 1.46001 1.25592 1.32155 1.34285 1.20552 0.85802 0.94391 0.97428 1.22633 0.98782 0.98837 1.01003 1.23313 0.94943 0.99293 0.96249 1.19980 0.85218 0.92858 0.97980 1.42616 1.10051 1.04510 1.82488 1.19074 0.88325 0.92774 1.37361 0.89087 1.24687 0.95841 0.97385 1.01271 1.69709 1.02642 1.34237 1.51440 0.86519 0.77125 0.87207 0.77528 1.21060 1.21663 1.20318 1.23249 0.90846 0.97368 0.97797 0.92342 0.92793 0.92532 0.90799 0.91289 0.88561 0.94382 0.91906 0.87787 0.76931 0.89171 0.91137 0.87043 0.86941 0.94525 0.93856 0.80572 0.93017 0.93698 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.91 37.16 0.33 -0.45 16 2 C -0.10 -0.70 3.65 -89.24 -0.33 -1.02 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -0.99 6.65 -25.35 -0.17 -1.16 16 5 C 0.03 0.33 5.80 -2.18 -0.01 0.32 16 6 N -0.49 -5.15 5.06 -231.41 -1.17 -6.32 16 7 C 0.03 0.24 5.30 -4.98 -0.03 0.21 16 8 C 0.51 6.43 7.63 -10.98 -0.08 6.35 16 9 O -0.52 -8.97 14.84 5.56 0.08 -8.88 16 10 N -0.73 -7.95 5.55 -61.46 -0.34 -8.29 16 11 C 0.14 1.93 5.76 -5.19 -0.03 1.90 16 12 C -0.19 -2.43 9.63 -36.02 -0.35 -2.78 16 13 C -0.12 -1.78 9.63 -36.02 -0.35 -2.13 16 14 C 0.17 3.26 6.35 -5.19 -0.03 3.23 16 15 N -0.75 -18.33 5.40 -61.09 -0.33 -18.66 16 16 C -0.25 -7.15 10.47 -15.06 -0.16 -7.31 16 17 H 0.09 2.84 8.06 -52.48 -0.42 2.41 16 18 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 19 N -0.93 -29.84 13.97 55.49 0.78 -29.07 16 20 Si 0.89 22.42 27.74 -169.99 -4.71 17.70 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 24 C 0.04 0.27 6.03 -2.18 -0.01 0.26 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.29 8.12 -51.93 -0.42 -0.13 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.47 7.71 -51.93 -0.40 0.07 16 30 H 0.10 1.23 6.91 -51.93 -0.36 0.88 16 31 H 0.04 0.35 7.82 -51.93 -0.41 -0.06 16 32 H 0.06 0.44 7.88 -51.93 -0.41 0.03 16 33 H 0.10 0.75 8.13 -51.93 -0.42 0.33 16 34 H 0.40 3.01 8.46 -40.82 -0.35 2.66 16 35 H 0.09 1.48 5.30 -51.93 -0.28 1.20 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.88 5.29 -51.93 -0.27 0.61 16 41 H 0.36 8.54 5.52 -40.82 -0.23 8.31 16 42 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 43 H 0.04 0.29 7.70 -51.93 -0.40 -0.11 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -34.91 352.93 -9.03 -43.93 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.34 Total: 6.83 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -1.31 Total: -2.56 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -1.07 Total: -62.34 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.91 -9.03 -43.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497675217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.862 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds