Wall clock time and date at job start Tue Mar 31 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 110.28523 * 2 1 4 4 C 1.54259 * 110.32476 * 122.12525 * 2 1 3 5 5 C 1.54377 * 105.05873 * 118.89985 * 4 2 1 6 6 N 1.48558 * 104.59913 * 23.85031 * 5 4 2 7 7 C 1.46892 * 111.00296 * 200.96093 * 6 5 4 8 8 C 1.50702 * 109.47293 * 290.12670 * 7 6 5 9 9 O 1.21279 * 119.99750 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99928 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99652 * 180.02562 * 10 8 7 12 12 C 1.50706 * 109.46806 * 179.97438 * 11 10 8 13 13 C 1.30991 * 119.99774 * 127.15405 * 12 11 10 14 14 C 1.50703 * 120.00394 * 7.55756 * 13 12 11 15 15 N 1.46498 * 109.47460 * 127.00634 * 14 13 12 16 16 C 1.36930 * 120.00380 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00111 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00252 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99873 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99874 * 359.97438 * 18 16 15 21 21 H 1.48509 * 109.46688 * 90.00280 * 20 18 16 22 22 H 1.48500 * 109.46912 * 209.99866 * 20 18 16 23 23 H 1.48493 * 109.47160 * 330.00282 * 20 18 16 24 24 C 1.48562 * 104.21904 * 320.52114 * 6 5 4 25 25 H 1.09000 * 109.47253 * 299.32712 * 1 2 3 26 26 H 1.09000 * 109.46934 * 179.32553 * 1 2 3 27 27 H 1.09000 * 109.47654 * 59.32897 * 1 2 3 28 28 H 1.09006 * 110.31991 * 237.79184 * 4 2 1 29 29 H 1.08998 * 110.32370 * 0.02562 * 4 2 1 30 30 H 1.09001 * 110.41419 * 142.63417 * 5 4 2 31 31 H 1.09002 * 110.41093 * 265.07166 * 5 4 2 32 32 H 1.09004 * 109.47243 * 50.12626 * 7 6 5 33 33 H 1.09001 * 109.47278 * 170.12660 * 7 6 5 34 34 H 0.96998 * 120.00156 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46530 * 299.99047 * 11 10 8 36 36 H 1.09001 * 109.47325 * 59.99568 * 11 10 8 37 37 H 1.07994 * 119.99753 * 307.15435 * 12 11 10 38 38 H 1.08003 * 120.00091 * 187.55455 * 13 12 11 39 39 H 1.09003 * 109.47419 * 247.00416 * 14 13 12 40 40 H 1.08999 * 109.46870 * 7.00509 * 14 13 12 41 41 H 0.97003 * 119.99608 * 359.97438 * 15 14 13 42 42 H 0.97002 * 119.99696 * 179.97438 * 19 18 16 43 43 H 1.09006 * 110.41152 * 280.70087 * 24 6 5 44 44 H 1.08999 * 110.40841 * 158.26465 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0658 -0.7692 1.2251 5 6 2.8807 -1.9414 0.6376 6 7 3.2694 -1.4835 -0.7211 7 6 3.6069 -2.6231 -1.5843 8 6 4.9013 -3.2393 -1.1196 9 8 5.4853 -2.7745 -0.1637 10 7 5.4103 -4.3063 -1.7669 11 6 6.6683 -4.9056 -1.3147 12 6 7.0146 -6.0748 -2.2004 13 6 8.1937 -6.1403 -2.7673 14 6 9.2617 -5.1415 -2.4027 15 7 10.4816 -5.8520 -2.0113 16 6 11.5938 -5.1473 -1.6356 17 1 11.5720 -4.0674 -1.6282 18 6 12.7496 -5.8205 -1.2642 19 7 13.8188 -5.1430 -0.9036 20 14 12.7873 -7.6881 -1.2764 21 1 13.2349 -8.1654 -2.6096 22 1 13.7301 -8.1709 -0.2356 23 1 11.4271 -8.2125 -0.9939 24 6 2.0662 -0.7722 -1.2245 25 1 -0.3634 0.5033 0.8959 26 1 -0.3633 -1.0276 -0.0121 27 1 -0.3634 0.5242 -0.8839 28 1 2.7082 -0.1249 1.8253 29 1 1.2388 -1.1472 1.8261 30 1 3.7671 -2.1295 1.2435 31 1 2.2649 -2.8386 0.5747 32 1 2.8113 -3.3664 -1.5323 33 1 3.7167 -2.2798 -2.6130 34 1 4.9433 -4.6778 -2.5316 35 1 7.4639 -4.1623 -1.3660 36 1 6.5580 -5.2495 -0.2862 37 1 6.2907 -6.8585 -2.3676 38 1 8.4004 -6.9100 -3.4961 39 1 9.4721 -4.5045 -3.2618 40 1 8.9162 -4.5275 -1.5711 41 1 10.5012 -6.8219 -2.0177 42 1 14.6263 -5.6135 -0.6437 43 1 1.3229 -1.4863 -1.5789 44 1 2.3394 -0.0798 -2.0208 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497675217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:11 Heat of formation + Delta-G solvation = -21.210556 kcal Electronic energy + Delta-G solvation = -21313.455363 eV Core-core repulsion = 18072.587057 eV Total energy + Delta-G solvation = -3240.868306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03443 -39.56310 -38.02713 -36.15696 -34.50923 -34.27175 -32.81640 -30.71459 -29.25585 -27.85479 -26.50619 -25.31357 -24.05439 -22.47541 -21.51808 -20.93867 -20.44697 -19.17177 -17.84994 -17.61761 -17.06761 -16.81214 -16.45743 -16.31031 -15.68828 -15.47019 -15.23653 -14.88485 -14.58663 -14.40864 -14.30745 -14.05686 -13.84922 -13.49159 -13.24153 -13.14218 -13.05156 -12.76580 -12.73420 -12.34453 -12.21601 -11.88988 -11.78109 -11.66789 -11.58889 -11.40358 -11.08537 -10.91270 -10.32558 -9.96195 -9.43140 -9.28410 -8.05966 -5.41218 1.01608 1.36336 1.41622 1.49247 1.66922 2.24958 2.46656 3.09877 3.24701 3.65786 3.69198 3.74974 3.84208 3.96930 4.01892 4.10836 4.27521 4.28082 4.32787 4.38081 4.53107 4.58573 4.64393 4.69987 4.80542 4.83435 4.87128 4.88565 4.99445 5.05374 5.15312 5.23217 5.30510 5.41214 5.42342 5.54485 5.68972 5.85743 5.86213 5.94883 6.17593 6.63578 7.03753 7.33198 7.77703 7.99690 9.15532 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035890 B = 0.002455 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.964990 B =11400.563230 C =11779.881971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 H 0.074 0.926 4 C -0.120 4.120 5 C 0.034 3.966 6 N -0.524 5.524 7 C 0.033 3.967 8 C 0.503 3.497 9 O -0.574 6.574 10 N -0.711 5.711 11 C 0.139 3.861 12 C -0.152 4.152 13 C -0.139 4.139 14 C 0.162 3.838 15 N -0.753 5.753 16 C -0.243 4.243 17 H 0.050 0.950 18 C -0.068 4.068 19 N -0.984 5.984 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.249 1.249 24 C 0.038 3.962 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.418 0.582 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.156 0.844 38 H 0.136 0.864 39 H 0.028 0.972 40 H 0.032 0.968 41 H 0.369 0.631 42 H 0.260 0.740 43 H 0.064 0.936 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.104 2.352 -4.010 34.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.094 4.094 6 N -0.248 5.248 7 C -0.098 4.098 8 C 0.290 3.710 9 O -0.453 6.453 10 N -0.365 5.365 11 C 0.015 3.985 12 C -0.171 4.171 13 C -0.158 4.158 14 C 0.036 3.964 15 N -0.399 5.399 16 C -0.374 4.374 17 H 0.068 0.932 18 C -0.259 4.259 19 N -0.634 5.634 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.221 1.221 23 H -0.174 1.174 24 C -0.089 4.089 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.146 0.854 34 H 0.256 0.744 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.174 0.826 38 H 0.154 0.846 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.203 0.797 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -33.098 3.230 -3.288 33.417 hybrid contribution 0.296 -1.402 -0.018 1.433 sum -32.802 1.828 -3.307 33.019 Atomic orbital electron populations 1.21820 0.92958 1.02222 1.02553 1.21882 0.96657 0.99428 0.93615 0.90732 1.22399 0.99176 0.96382 0.97824 1.23104 0.98346 0.97193 0.90745 1.65091 1.34893 1.22488 1.02352 1.22185 0.93800 0.94070 0.99740 1.21225 0.87547 0.79640 0.82588 1.90717 1.62560 1.62412 1.29591 1.45795 1.24461 1.31619 1.34591 1.20354 0.86206 0.94331 0.97599 1.22839 0.98469 0.98140 0.97677 1.23062 0.94317 0.99547 0.98920 1.20057 0.85144 0.94055 0.97102 1.42589 1.10195 1.04831 1.82280 1.19030 0.90254 0.91492 1.36650 0.93156 1.25649 0.95255 1.03598 1.01386 1.69912 1.03528 1.36760 1.53180 0.85272 0.78306 0.79652 0.77711 1.19821 1.22097 1.17375 1.23294 0.90169 0.97552 0.97879 0.92025 0.92300 0.91614 0.92221 0.89793 0.92306 0.93206 0.88852 0.85448 0.74429 0.92591 0.92218 0.82626 0.84618 0.95403 0.95059 0.79722 0.93167 0.91788 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.91 71.98 0.64 -0.51 16 2 C -0.10 -1.24 3.65 -9.90 -0.04 -1.28 16 3 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 4 C -0.12 -1.90 6.65 31.49 0.21 -1.69 16 5 C 0.03 0.69 5.80 86.45 0.50 1.19 16 6 N -0.52 -10.42 5.06 -886.06 -4.48 -14.90 16 7 C 0.03 0.52 5.30 85.56 0.45 0.98 16 8 C 0.50 12.36 7.63 87.66 0.67 13.03 16 9 O -0.57 -20.74 14.84 -3.03 -0.04 -20.78 16 10 N -0.71 -14.19 5.55 -466.76 -2.59 -16.78 16 11 C 0.14 3.68 5.76 85.63 0.49 4.17 16 12 C -0.15 -3.31 9.63 25.66 0.25 -3.07 16 13 C -0.14 -3.84 9.63 25.66 0.25 -3.59 16 14 C 0.16 6.41 6.35 85.63 0.54 6.95 16 15 N -0.75 -36.68 5.40 -347.17 -1.87 -38.55 16 16 C -0.24 -14.62 10.47 84.04 0.88 -13.74 16 17 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 18 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 19 N -0.98 -65.04 13.97 21.65 0.30 -64.74 16 20 Si 0.96 46.21 27.74 68.60 1.90 48.11 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.25 -10.70 6.52 99.48 0.65 -10.05 16 24 C 0.04 0.50 6.03 86.45 0.52 1.02 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.45 8.12 -2.39 -0.02 0.43 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.08 1.05 7.71 -2.39 -0.02 1.03 16 30 H 0.06 1.62 6.91 -2.39 -0.02 1.60 16 31 H 0.05 0.85 7.82 -2.39 -0.02 0.83 16 32 H 0.09 0.93 7.88 -2.39 -0.02 0.91 16 33 H 0.13 1.41 8.13 -2.39 -0.02 1.39 16 34 H 0.42 4.80 8.46 -92.71 -0.78 4.02 16 35 H 0.06 1.90 5.30 -2.39 -0.01 1.89 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.03 1.34 5.29 -2.39 -0.01 1.32 16 41 H 0.37 16.70 5.52 -92.71 -0.51 16.19 16 42 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 43 H 0.06 0.60 7.70 -2.38 -0.02 0.58 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -80.73 352.93 -1.32 -82.05 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.37 Total: 25.79 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 5.84 Total: -0.20 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -8.65 Total: -134.97 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.04 Total: -20.78 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.11 kcal Total: -80.73 -1.32 -82.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497675217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.839 kcal (2) G-P(sol) polarization free energy of solvation -80.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds