Wall clock time and date at job start Tue Mar 31 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.28955 * 2 1 4 4 C 1.54260 * 110.32807 * 122.12756 * 2 1 3 5 5 C 1.54381 * 105.06213 * 118.89636 * 4 2 1 6 6 N 1.48553 * 104.59389 * 23.85245 * 5 4 2 7 7 C 1.46904 * 111.00004 * 200.95997 * 6 5 4 8 8 C 1.50699 * 109.47227 * 290.12717 * 7 6 5 9 9 O 1.21284 * 119.99649 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00402 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00132 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47054 * 179.97438 * 11 10 8 13 13 C 1.30998 * 120.00259 * 124.99485 * 12 11 10 14 14 C 1.50700 * 120.00259 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.47309 * 125.00264 * 14 13 12 16 16 C 1.36926 * 120.00371 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00119 * 0.02562 * 16 15 14 18 18 C 1.38818 * 120.00352 * 180.02562 * 16 15 14 19 19 N 1.31618 * 119.99435 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99973 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47477 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47192 * 120.00364 * 20 18 16 23 23 H 1.48500 * 109.47071 * 239.99514 * 20 18 16 24 24 C 1.48558 * 104.22588 * 320.52051 * 6 5 4 25 25 H 1.09002 * 109.47153 * 299.32544 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.32735 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.32716 * 1 2 3 28 28 H 1.09002 * 110.32312 * 237.79553 * 4 2 1 29 29 H 1.09002 * 110.32032 * 359.97438 * 4 2 1 30 30 H 1.08996 * 110.41313 * 142.63749 * 5 4 2 31 31 H 1.09001 * 110.40788 * 265.07948 * 5 4 2 32 32 H 1.08997 * 109.46872 * 50.12757 * 7 6 5 33 33 H 1.09009 * 109.46828 * 170.12928 * 7 6 5 34 34 H 0.97001 * 119.99304 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47116 * 299.99418 * 11 10 8 36 36 H 1.08991 * 109.47306 * 60.00083 * 11 10 8 37 37 H 1.08001 * 120.00307 * 305.00379 * 12 11 10 38 38 H 1.07999 * 119.99925 * 0.02562 * 13 12 11 39 39 H 1.09001 * 109.47308 * 245.00278 * 14 13 12 40 40 H 1.08999 * 109.46953 * 5.00208 * 14 13 12 41 41 H 0.97007 * 119.99332 * 0.02562 * 15 14 13 42 42 H 0.97003 * 119.99779 * 180.02562 * 19 18 16 43 43 H 1.08997 * 110.40899 * 280.70312 * 24 6 5 44 44 H 1.09006 * 110.41652 * 158.26330 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0659 -0.7693 1.2250 5 6 2.8807 -1.9415 0.6376 6 7 3.2693 -1.4835 -0.7211 7 6 3.6068 -2.6232 -1.5844 8 6 4.9012 -3.2394 -1.1197 9 8 5.4848 -2.7752 -0.1632 10 7 5.4103 -4.3063 -1.7670 11 6 6.6682 -4.9057 -1.3149 12 6 7.0145 -6.0747 -2.2005 13 6 8.1778 -6.1194 -2.8013 14 6 8.5238 -7.2882 -3.6875 15 7 8.9048 -6.7988 -5.0147 16 6 9.2631 -7.6856 -5.9946 17 1 9.2645 -8.7459 -5.7892 18 6 9.6246 -7.2218 -7.2521 19 7 9.6234 -5.9297 -7.5023 20 14 10.1128 -8.4317 -8.5889 21 1 10.0318 -9.8159 -8.0575 22 1 9.1909 -8.2909 -9.7447 23 1 11.5032 -8.1499 -9.0279 24 6 2.0662 -0.7722 -1.2245 25 1 -0.3633 0.5033 0.8960 26 1 -0.3633 -1.0276 -0.0121 27 1 -0.3634 0.5243 -0.8839 28 1 2.7082 -0.1250 1.8254 29 1 1.2388 -1.1465 1.8266 30 1 3.7671 -2.1296 1.2434 31 1 2.2648 -2.8387 0.5746 32 1 2.8113 -3.3664 -1.5324 33 1 3.7166 -2.2797 -2.6131 34 1 4.9432 -4.6778 -2.5317 35 1 7.4639 -4.1624 -1.3661 36 1 6.5579 -5.2496 -0.2865 37 1 6.3036 -6.8757 -2.3401 38 1 8.8888 -5.3186 -2.6616 39 1 9.3560 -7.8409 -3.2514 40 1 7.6585 -7.9450 -3.7769 41 1 8.9039 -5.8464 -5.1991 42 1 9.8756 -5.6056 -8.3811 43 1 1.3229 -1.4863 -1.5789 44 1 2.3393 -0.0797 -2.0209 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497675218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:14 Heat of formation + Delta-G solvation = -7.850602 kcal Electronic energy + Delta-G solvation = -20989.602472 eV Core-core repulsion = 17749.313497 eV Total energy + Delta-G solvation = -3240.288975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12869 -38.73089 -36.25905 -34.68585 -33.70420 -32.81561 -30.70397 -29.99676 -28.34582 -26.79489 -25.15296 -23.90140 -22.04425 -21.55770 -20.69670 -20.27257 -19.34021 -17.19713 -17.06631 -16.48992 -16.30350 -15.57005 -15.18524 -14.77663 -14.54430 -14.28383 -13.82519 -13.61921 -13.46118 -13.29571 -13.20230 -12.87762 -12.64091 -12.48837 -12.13380 -12.01523 -11.82373 -11.63107 -11.22493 -11.05799 -11.01428 -10.85560 -10.80317 -10.62748 -10.06961 -9.91805 -9.81976 -9.23082 -9.00418 -8.78537 -8.67103 -6.96882 -5.80055 -3.09654 2.25809 2.62107 3.18252 3.41248 3.46825 3.49228 3.82929 4.26290 4.36985 4.57513 4.59681 4.71446 4.91858 4.95326 4.97727 5.05825 5.10808 5.17722 5.26156 5.27437 5.35704 5.45291 5.53147 5.54972 5.61680 5.70795 5.80705 5.83004 5.90227 5.95293 5.98923 6.11909 6.36395 6.45909 6.55003 6.55594 6.60694 6.89539 7.13511 7.50302 7.66760 8.22423 8.38222 9.49582 10.05930 10.41218 11.42714 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031030 B = 0.002229 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.150212 B =12561.213469 C =13174.393157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.080 0.920 4 C -0.121 4.121 5 C 0.033 3.967 6 N -0.492 5.492 7 C 0.024 3.976 8 C 0.513 3.487 9 O -0.527 6.527 10 N -0.726 5.726 11 C 0.157 3.843 12 C -0.202 4.202 13 C -0.106 4.106 14 C 0.172 3.828 15 N -0.730 5.730 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.035 3.965 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.402 0.598 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.031 0.969 40 H 0.025 0.975 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.046 0.954 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.913 9.147 16.174 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.099 0.901 4 C -0.159 4.159 5 C -0.095 4.095 6 N -0.216 5.216 7 C -0.108 4.108 8 C 0.298 3.702 9 O -0.402 6.402 10 N -0.379 5.379 11 C 0.035 3.965 12 C -0.221 4.221 13 C -0.126 4.126 14 C 0.045 3.955 15 N -0.374 5.374 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.211 4.211 19 N -0.580 5.580 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.093 4.093 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.236 0.764 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.956 9.658 16.797 26.416 hybrid contribution -0.579 -1.127 -1.412 1.897 sum -18.535 8.531 15.385 25.554 Atomic orbital electron populations 1.21869 0.94627 1.01769 1.01913 1.21873 0.95368 1.00022 0.94384 0.90108 1.22402 0.99165 0.97043 0.97281 1.23211 0.99470 0.95976 0.90849 1.65170 1.33063 1.21441 1.01943 1.22171 0.95426 0.93770 0.99387 1.20424 0.86664 0.79834 0.83282 1.90685 1.61114 1.61136 1.27314 1.46048 1.25514 1.31995 1.34362 1.20279 0.85608 0.93418 0.97233 1.22691 0.98620 0.99056 1.01758 1.23340 0.96408 0.99008 0.93821 1.19828 0.97290 0.92357 0.85995 1.42306 1.81418 1.06970 1.06713 1.19291 1.37507 0.89705 0.90791 0.91005 1.24779 1.02427 0.96022 0.97823 1.69679 1.54710 1.11600 1.22061 0.86083 0.77848 0.80052 0.81998 1.20511 1.21818 1.21792 1.23257 0.90875 0.97419 0.97777 0.92375 0.92749 0.92480 0.90915 0.91296 0.88707 0.94353 0.91727 0.87572 0.76351 0.91234 0.91267 0.86817 0.87251 0.95134 0.95686 0.78130 0.93485 0.93582 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.91 37.16 0.33 -0.47 16 2 C -0.10 -0.70 3.65 -89.24 -0.33 -1.03 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -0.95 6.65 -25.35 -0.17 -1.12 16 5 C 0.03 0.32 5.80 -2.19 -0.01 0.31 16 6 N -0.49 -5.19 5.06 -231.41 -1.17 -6.36 16 7 C 0.02 0.23 5.30 -4.97 -0.03 0.21 16 8 C 0.51 6.48 7.63 -10.99 -0.08 6.40 16 9 O -0.53 -8.61 14.84 5.55 0.08 -8.53 16 10 N -0.73 -8.37 5.55 -61.48 -0.34 -8.71 16 11 C 0.16 2.01 6.11 -5.20 -0.03 1.97 16 12 C -0.20 -2.73 9.24 -36.03 -0.33 -3.06 16 13 C -0.11 -1.73 9.24 -36.03 -0.33 -2.06 16 14 C 0.17 3.44 6.70 -5.19 -0.03 3.41 16 15 N -0.73 -18.61 5.59 -61.09 -0.34 -18.95 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C 0.03 0.28 6.03 -2.18 -0.01 0.26 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.30 8.12 -51.93 -0.42 -0.12 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.46 7.71 -51.93 -0.40 0.05 16 30 H 0.09 1.15 6.91 -51.93 -0.36 0.79 16 31 H 0.04 0.35 7.82 -51.93 -0.41 -0.06 16 32 H 0.06 0.50 7.88 -51.93 -0.41 0.09 16 33 H 0.11 0.89 8.13 -51.92 -0.42 0.46 16 34 H 0.40 3.83 8.46 -40.82 -0.35 3.48 16 35 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 1.44 7.84 -52.49 -0.41 1.03 16 38 H 0.11 1.76 7.84 -52.49 -0.41 1.35 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 41 H 0.39 10.34 7.66 -40.82 -0.31 10.03 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.05 0.33 7.70 -51.93 -0.40 -0.07 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -32.96 360.52 -9.53 -42.49 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.61 Total: 7.51 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.28 Total: -2.64 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -1.13 Total: -61.57 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.96 -9.53 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497675218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.638 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds